Wall clock time and date at job start Mon Mar 30 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34635 * 116.99794 * 2 1 4 4 O 1.21508 * 120.00293 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99991 * 180.02562 * 3 2 1 6 6 C 1.46505 * 120.00022 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47065 * 179.97438 * 6 5 3 8 8 H 1.09007 * 110.43010 * 52.46209 * 7 6 5 9 9 C 1.55238 * 110.46855 * 289.81069 * 7 6 5 10 10 C 1.54894 * 102.58338 * 203.39183 * 9 7 6 11 11 C 1.54266 * 104.31305 * 37.93170 * 10 9 7 12 12 H 1.09001 * 110.03084 * 95.60669 * 11 10 9 13 13 C 1.52999 * 110.03121 * 216.98718 * 11 10 9 14 14 C 1.50695 * 109.46965 * 293.54562 * 13 11 10 15 15 H 1.07994 * 120.00616 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99955 * 179.97438 * 14 13 11 17 17 N 1.31518 * 119.99674 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00339 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46935 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46912 * 120.00344 * 18 16 14 21 21 H 1.48494 * 109.47300 * 240.00389 * 18 16 14 22 22 C 1.53869 * 106.60031 * 336.32486 * 11 10 9 23 23 H 1.08997 * 109.46565 * 299.99558 * 1 2 3 24 24 H 1.08994 * 109.47431 * 59.99346 * 1 2 3 25 25 H 1.08996 * 109.46897 * 180.02562 * 1 2 3 26 26 H 0.96999 * 120.00327 * 0.02562 * 5 3 2 27 27 H 1.08996 * 109.47158 * 60.00292 * 6 5 3 28 28 H 1.08995 * 109.46934 * 299.99821 * 6 5 3 29 29 H 1.08996 * 110.89448 * 85.10747 * 9 7 6 30 30 H 1.08993 * 110.76342 * 321.62413 * 9 7 6 31 31 H 1.09002 * 110.48891 * 279.18596 * 10 9 7 32 32 H 1.08998 * 110.48494 * 156.67683 * 10 9 7 33 33 H 1.09000 * 109.47350 * 53.54721 * 13 11 10 34 34 H 1.09003 * 109.47056 * 173.54811 * 13 11 10 35 35 H 0.96997 * 119.99534 * 180.02562 * 17 16 14 36 36 H 1.08999 * 110.04012 * 119.28327 * 22 11 10 37 37 H 1.09003 * 110.03070 * 240.71854 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0742 2.5756 0.0000 7 6 5.5911 2.3752 -0.0001 8 1 5.8867 1.7087 -0.8104 9 6 6.0647 1.8148 1.3680 10 6 7.5519 2.2456 1.4125 11 6 7.5616 3.6493 0.7727 12 1 7.5141 4.4135 1.5484 13 6 8.8271 3.8336 -0.0673 14 6 10.0331 3.8401 0.8362 15 1 9.9095 3.7240 1.9028 16 6 11.2946 3.9933 0.3011 17 7 11.4452 4.1343 -0.9978 18 14 12.7896 4.0022 1.4210 19 1 12.3536 3.8281 2.8300 20 1 13.6976 2.8896 1.0432 21 1 13.5059 5.2953 1.2803 22 6 6.3149 3.7317 -0.1254 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.9375 0.4568 -0.0013 27 1 3.7818 3.1320 0.8905 28 1 3.7810 3.1331 -0.8894 29 1 5.9763 0.7287 1.3948 30 1 5.5061 2.2694 2.1860 31 1 8.1660 1.5574 0.8317 32 1 7.9044 2.2935 2.4428 33 1 8.9121 3.0141 -0.7809 34 1 8.7712 4.7798 -0.6056 35 1 12.3326 4.2417 -1.3743 36 1 5.6623 4.5359 0.2144 37 1 6.6110 3.9026 -1.1604 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071719.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:33 Heat of formation + Delta-G solvation = -112.783313 kcal Electronic energy + Delta-G solvation = -17101.786900 eV Core-core repulsion = 14263.956328 eV Total energy + Delta-G solvation = -2837.830572 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51590 -38.41054 -36.66882 -34.88975 -32.93778 -30.63118 -28.91894 -27.81786 -26.37142 -24.09623 -22.21580 -21.41365 -20.11689 -19.02901 -18.32111 -17.07009 -16.68269 -16.36084 -15.34046 -14.84618 -14.48484 -14.29185 -13.86085 -13.80520 -13.10861 -12.78824 -12.31887 -12.24752 -12.16308 -11.43968 -11.20167 -10.95213 -10.83797 -10.82295 -10.59432 -10.51299 -10.37906 -10.27052 -10.15494 -9.57680 -9.25154 -9.08906 -8.94722 -8.33108 -5.98309 -3.99741 2.10118 2.72148 3.31240 3.39113 3.42855 4.17353 4.47188 4.82858 4.92277 4.93162 4.99676 5.10738 5.25265 5.37533 5.54022 5.64906 5.69454 5.91545 5.98758 6.10836 6.15743 6.18087 6.26126 6.32879 6.40612 6.59646 6.69546 6.94520 7.04171 7.23885 7.30710 7.69981 7.85471 8.02209 8.21907 8.46027 9.07611 9.64215 11.13016 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.071065 B = 0.003682 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.909871 B = 7602.319365 C = 7737.507228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.376 6.376 3 C 0.643 3.357 4 O -0.576 6.576 5 N -0.704 5.704 6 C 0.143 3.857 7 C -0.105 4.105 8 H 0.081 0.919 9 C -0.123 4.123 10 C -0.105 4.105 11 C -0.085 4.085 12 H 0.058 0.942 13 C 0.028 3.972 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.111 4.111 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.408 0.592 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.056 0.944 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.372 -8.121 1.979 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.289 6.289 3 C 0.395 3.605 4 O -0.465 6.465 5 N -0.363 5.363 6 C 0.022 3.978 7 C -0.124 4.124 8 H 0.099 0.901 9 C -0.160 4.160 10 C -0.142 4.142 11 C -0.103 4.103 12 H 0.076 0.924 13 C -0.009 4.009 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.149 4.149 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.242 0.758 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.637 -7.602 1.848 19.294 hybrid contribution 1.031 -0.284 0.505 1.182 sum -16.606 -7.886 2.353 18.533 Atomic orbital electron populations 1.23162 0.74585 1.03306 1.02689 1.86242 1.24106 1.31363 1.87234 1.18213 0.83664 0.82068 0.76549 1.90996 1.64725 1.34896 1.55912 1.44812 1.02685 1.11243 1.77519 1.21591 0.91663 0.82036 1.02547 1.22357 0.91476 0.99544 0.98974 0.90083 1.22711 0.98076 0.99372 0.95866 1.22290 0.93655 0.97639 1.00661 1.21810 0.95247 0.95979 0.97303 0.92393 1.19226 0.90169 0.96900 0.94572 1.21302 0.91318 1.48942 0.93672 0.92668 1.25030 0.99074 0.95552 0.94918 1.69974 1.22608 1.50424 1.10638 0.86591 0.83154 0.77533 0.81056 1.19778 1.21118 1.21105 1.22247 0.96948 0.94410 1.01342 0.91925 0.91913 0.88092 0.75753 0.91068 0.91220 0.92422 0.91944 0.91320 0.92469 0.96513 0.96757 0.93151 0.92499 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 10.56 101.05 1.07 1.52 16 2 O -0.38 -4.21 10.62 -40.31 -0.43 -4.64 16 3 C 0.64 8.55 8.75 54.06 0.47 9.02 16 4 O -0.58 -9.40 16.13 -19.28 -0.31 -9.71 16 5 N -0.70 -8.14 5.45 -65.28 -0.36 -8.50 16 6 C 0.14 1.77 4.96 -4.04 -0.02 1.75 16 7 C -0.10 -1.38 2.89 -88.77 -0.26 -1.64 16 8 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 9 C -0.12 -1.65 6.22 -24.55 -0.15 -1.80 16 10 C -0.10 -1.83 5.82 -25.07 -0.15 -1.98 16 11 C -0.08 -1.65 2.89 -89.51 -0.26 -1.91 16 12 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 13 C 0.03 0.71 4.11 -27.89 -0.11 0.59 16 14 C -0.51 -14.18 8.66 -34.44 -0.30 -14.48 16 15 H 0.06 1.49 7.68 -52.49 -0.40 1.09 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 18 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.11 -1.77 6.03 -25.62 -0.15 -1.93 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.41 3.89 8.55 -40.82 -0.35 3.55 16 27 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.81 7.97 -51.93 -0.41 0.40 16 31 H 0.07 1.30 7.78 -51.93 -0.40 0.89 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 36 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 37 H 0.07 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 307.82 15.07 4.64 4.64 Total: -1.00 -31.84 307.82 -6.85 -38.69 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.15 Total: -1.59 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 0.04 Total: -9.38 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.38 Total: -34.51 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.74 Total: -14.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.84 -6.85 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071719.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.091 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds