Wall clock time and date at job start Mon Mar 30 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47031 * 2 1 4 4 C 1.52994 * 109.47126 * 119.99900 * 2 1 3 5 5 H 1.09003 * 109.68648 * 299.47287 * 4 2 1 6 6 C 1.53487 * 109.68574 * 59.99887 * 4 2 1 7 7 O 1.45433 * 108.11071 * 181.48689 * 6 4 2 8 8 C 1.34208 * 117.18367 * 313.56232 * 7 6 4 9 9 O 1.21510 * 118.46279 * 196.81858 * 8 7 6 10 10 N 1.33734 * 123.08263 * 16.79022 * 8 7 6 11 11 C 1.46492 * 118.52334 * 177.43320 * 10 8 7 12 12 H 1.09005 * 109.47295 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47306 * 300.00206 * 11 10 8 14 14 C 1.50703 * 109.47096 * 60.00278 * 11 10 8 15 15 H 1.07998 * 119.99654 * 359.97438 * 14 11 10 16 16 C 1.37872 * 119.99918 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00619 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99791 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47196 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47261 * 119.99809 * 18 16 14 21 21 H 1.48499 * 109.47310 * 239.99479 * 18 16 14 22 22 C 1.46060 * 122.95524 * 357.72053 * 10 8 7 23 23 H 1.09000 * 109.47308 * 300.00211 * 1 2 3 24 24 H 1.09005 * 109.46810 * 59.99800 * 1 2 3 25 25 H 1.08995 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47308 * 239.99789 * 2 1 3 27 27 H 1.09002 * 109.46703 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.46942 * 299.99359 * 3 2 1 29 29 H 1.09001 * 109.47231 * 60.00307 * 3 2 1 30 30 H 1.08997 * 109.73363 * 61.83347 * 6 4 2 31 31 H 1.08998 * 109.73362 * 301.14229 * 6 4 2 32 32 H 1.08999 * 109.47155 * 299.99823 * 13 11 10 33 33 H 1.09006 * 109.47464 * 60.00100 * 13 11 10 34 34 H 1.09002 * 109.47359 * 180.02562 * 13 11 10 35 35 H 0.96996 * 120.00627 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.40238 * 139.57113 * 22 10 8 37 37 H 1.09002 * 109.39371 * 259.30055 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6863 -0.2046 2.1415 6 6 1.5310 -2.1692 1.2542 7 8 2.0050 -2.8108 2.4703 8 6 3.2962 -2.6366 2.7922 9 8 3.7971 -3.3891 3.6042 10 7 4.0576 -1.6741 2.2608 11 6 5.4399 -1.5388 2.7263 12 1 5.9216 -0.7147 2.1999 13 6 5.4464 -1.2559 4.2299 14 6 6.1897 -2.8170 2.4524 15 1 5.6866 -3.6473 1.9793 16 6 7.5176 -2.9268 2.8068 17 7 8.1302 -1.9159 3.3834 18 14 8.4471 -4.5110 2.4666 19 1 7.5388 -5.4873 1.8132 20 1 9.5963 -4.2278 1.5697 21 1 8.9455 -5.0770 3.7458 22 6 3.5710 -0.7480 1.2416 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.9186 -2.6986 0.3838 31 1 0.4412 -2.1764 1.2350 32 1 4.9042 -0.3314 4.4280 33 1 4.9647 -2.0797 4.7567 34 1 6.4750 -1.1547 4.5762 35 1 9.0645 -1.9930 3.6323 36 1 3.9516 0.2520 1.4498 37 1 3.9225 -1.0709 0.2617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261072708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:16 Heat of formation + Delta-G solvation = -85.524552 kcal Electronic energy + Delta-G solvation = -18546.675567 eV Core-core repulsion = 15710.027024 eV Total energy + Delta-G solvation = -2836.648543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41822 -37.43456 -36.28290 -34.66647 -32.74880 -30.16337 -28.84704 -27.68402 -25.32576 -25.04200 -23.60348 -21.59695 -19.91427 -19.11412 -17.45471 -16.48571 -15.72372 -15.43310 -14.91025 -14.56837 -14.16983 -13.95782 -13.72324 -13.29857 -12.93834 -12.87476 -12.34183 -12.29610 -11.74417 -11.48250 -11.42671 -11.08844 -10.93757 -10.82205 -10.73669 -10.63530 -10.44419 -10.25277 -10.07015 -9.81074 -9.28992 -8.85093 -8.31381 -7.67096 -5.96736 -3.98857 3.32753 3.35987 3.43484 3.51039 3.81471 4.12508 4.49863 4.57321 4.58793 4.74468 4.99006 5.16812 5.26696 5.35173 5.40910 5.48222 5.59534 5.62289 5.68534 5.75071 5.86697 5.93216 6.05182 6.16711 6.27166 6.49114 6.89433 7.05778 7.15865 7.41009 7.76455 7.91515 8.12619 8.31289 8.80286 8.98475 9.20027 9.64898 11.09511 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033335 B = 0.006950 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.751073 B = 4027.860160 C = 4277.400639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.150 4.150 4 C -0.137 4.137 5 H 0.088 0.912 6 C 0.066 3.934 7 O -0.361 6.361 8 C 0.641 3.359 9 O -0.509 6.509 10 N -0.607 5.607 11 C 0.279 3.721 12 H 0.047 0.953 13 C -0.157 4.157 14 C -0.497 4.497 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.283 1.283 22 C 0.115 3.885 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.003 0.997 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.260 0.740 36 H 0.078 0.922 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 6.801 -8.118 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C -0.207 4.207 4 C -0.156 4.156 5 H 0.107 0.893 6 C -0.009 4.009 7 O -0.274 6.274 8 C 0.394 3.606 9 O -0.392 6.392 10 N -0.353 5.353 11 C 0.180 3.820 12 H 0.064 0.936 13 C -0.216 4.216 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.538 5.538 18 Si 0.728 3.272 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.009 4.009 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.765 6.310 -7.523 16.104 hybrid contribution 0.567 -0.586 -0.351 0.888 sum -12.198 5.724 -7.874 15.606 Atomic orbital electron populations 1.21918 0.94938 1.01916 1.02036 1.21009 0.95834 0.96591 0.96904 1.21881 1.01773 0.95282 1.01800 1.22199 0.96532 0.96505 1.00331 0.89344 1.23408 1.00040 0.91596 0.85870 1.86681 1.26885 1.71100 1.42778 1.17880 0.78786 0.81632 0.82339 1.90986 1.66746 1.45313 1.36162 1.47803 1.15307 1.31237 1.40916 1.18847 0.73527 0.97597 0.92065 0.93571 1.22186 1.03369 0.97301 0.98716 1.21295 0.94657 0.99205 1.38462 0.92303 1.24831 0.97405 0.96653 0.95192 1.69873 1.11272 1.30527 1.42158 0.86407 0.79335 0.83574 0.77906 1.19888 1.21228 1.20953 1.21515 0.91945 0.94760 0.92662 0.92415 0.92432 0.92403 0.90542 0.91919 0.92560 0.92514 0.91235 0.87759 0.97768 0.92688 0.88989 0.92994 0.90414 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.85 37.16 0.33 -0.83 16 2 C -0.08 -0.78 2.48 -90.62 -0.22 -1.00 16 3 C -0.15 -1.31 8.89 37.16 0.33 -0.98 16 4 C -0.14 -1.71 2.06 -90.30 -0.19 -1.90 16 5 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 6 C 0.07 0.89 6.16 37.41 0.23 1.13 16 7 O -0.36 -7.14 10.50 -39.27 -0.41 -7.55 16 8 C 0.64 15.10 7.59 53.59 0.41 15.51 16 9 O -0.51 -14.28 13.69 -19.41 -0.27 -14.55 16 10 N -0.61 -13.29 2.79 -173.93 -0.48 -13.77 16 11 C 0.28 7.15 2.62 -69.09 -0.18 6.97 16 12 H 0.05 1.20 7.83 -51.93 -0.41 0.79 16 13 C -0.16 -4.08 8.87 37.16 0.33 -3.75 16 14 C -0.50 -14.28 7.40 -34.44 -0.25 -14.54 16 15 H 0.06 1.77 7.34 -52.49 -0.39 1.39 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 18 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 19 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 C 0.12 1.84 5.02 -4.21 -0.02 1.82 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.59 6.76 -51.93 -0.35 0.24 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.10 6.42 -51.93 -0.33 0.76 16 32 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 33 H 0.05 1.52 6.07 -51.93 -0.32 1.21 16 34 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.08 1.16 7.08 -51.93 -0.37 0.80 16 37 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 LS Contribution 289.92 15.07 4.37 4.37 Total: -1.00 -32.72 289.92 -6.27 -38.99 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -5.74 Total: -3.69 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 0.66 Total: 4.03 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.14 Total: -39.05 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.68 Total: -22.10 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.72 -6.27 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.534 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds