Wall clock time and date at job start Mon Mar 30 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47031 * 2 1 4 4 C 1.52994 * 109.47126 * 119.99900 * 2 1 3 5 5 H 1.09003 * 109.68648 * 299.47287 * 4 2 1 6 6 C 1.53487 * 109.68574 * 59.99887 * 4 2 1 7 7 O 1.45433 * 108.11071 * 181.48689 * 6 4 2 8 8 C 1.34208 * 117.18367 * 313.56232 * 7 6 4 9 9 O 1.21510 * 118.46279 * 196.81858 * 8 7 6 10 10 N 1.33734 * 123.08263 * 16.79022 * 8 7 6 11 11 C 1.46492 * 118.52334 * 177.43320 * 10 8 7 12 12 H 1.09005 * 109.47295 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47306 * 300.00206 * 11 10 8 14 14 C 1.50703 * 109.47096 * 60.00278 * 11 10 8 15 15 H 1.07998 * 119.99654 * 359.97438 * 14 11 10 16 16 C 1.37872 * 119.99918 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00619 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99791 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47196 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47261 * 119.99809 * 18 16 14 21 21 H 1.48499 * 109.47310 * 239.99479 * 18 16 14 22 22 C 1.46060 * 122.95524 * 357.72053 * 10 8 7 23 23 H 1.09000 * 109.47308 * 300.00211 * 1 2 3 24 24 H 1.09005 * 109.46810 * 59.99800 * 1 2 3 25 25 H 1.08995 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47308 * 239.99789 * 2 1 3 27 27 H 1.09002 * 109.46703 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.46942 * 299.99359 * 3 2 1 29 29 H 1.09001 * 109.47231 * 60.00307 * 3 2 1 30 30 H 1.08997 * 109.73363 * 61.83347 * 6 4 2 31 31 H 1.08998 * 109.73362 * 301.14229 * 6 4 2 32 32 H 1.08999 * 109.47155 * 299.99823 * 13 11 10 33 33 H 1.09006 * 109.47464 * 60.00100 * 13 11 10 34 34 H 1.09002 * 109.47359 * 180.02562 * 13 11 10 35 35 H 0.96996 * 120.00627 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.40238 * 139.57113 * 22 10 8 37 37 H 1.09002 * 109.39371 * 259.30055 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6863 -0.2046 2.1415 6 6 1.5310 -2.1692 1.2542 7 8 2.0050 -2.8108 2.4703 8 6 3.2962 -2.6366 2.7922 9 8 3.7971 -3.3891 3.6042 10 7 4.0576 -1.6741 2.2608 11 6 5.4399 -1.5388 2.7263 12 1 5.9216 -0.7147 2.1999 13 6 5.4464 -1.2559 4.2299 14 6 6.1897 -2.8170 2.4524 15 1 5.6866 -3.6473 1.9793 16 6 7.5176 -2.9268 2.8068 17 7 8.1302 -1.9159 3.3834 18 14 8.4471 -4.5110 2.4666 19 1 7.5388 -5.4873 1.8132 20 1 9.5963 -4.2278 1.5697 21 1 8.9455 -5.0770 3.7458 22 6 3.5710 -0.7480 1.2416 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.9186 -2.6986 0.3838 31 1 0.4412 -2.1764 1.2350 32 1 4.9042 -0.3314 4.4280 33 1 4.9647 -2.0797 4.7567 34 1 6.4750 -1.1547 4.5762 35 1 9.0645 -1.9930 3.6323 36 1 3.9516 0.2520 1.4498 37 1 3.9225 -1.0709 0.2617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261072708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:15 Heat of formation + Delta-G solvation = -106.486679 kcal Electronic energy + Delta-G solvation = -18547.584553 eV Core-core repulsion = 15710.027024 eV Total energy + Delta-G solvation = -2837.557529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.98335 -38.81603 -37.83754 -36.30206 -34.70314 -31.72848 -30.33071 -28.61271 -27.28444 -26.43721 -25.10254 -23.15374 -21.05051 -20.52086 -19.23932 -18.21317 -17.54886 -16.97428 -16.54827 -15.99021 -15.52514 -15.34394 -14.98873 -14.79051 -14.51421 -13.96348 -13.71137 -13.43240 -13.11309 -12.93359 -12.85856 -12.77415 -12.69843 -12.48111 -12.26365 -12.13244 -11.77592 -11.68695 -11.51144 -11.36346 -11.12064 -10.79626 -10.45857 -9.49893 -8.13777 -6.22539 1.36055 1.39939 1.50479 1.73801 2.06162 2.41486 2.72509 3.14354 3.51639 3.56097 3.84209 4.13111 4.18142 4.37730 4.50383 4.51084 4.63790 4.67115 4.78643 4.88928 4.92622 4.95074 5.06729 5.09607 5.13025 5.16461 5.31284 5.48853 5.50612 5.54329 5.65136 5.82451 5.99505 6.22246 6.77204 7.07887 7.33424 7.50184 8.91027 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033335 B = 0.006950 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.751073 B = 4027.860160 C = 4277.400639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.151 4.151 4 C -0.124 4.124 5 H 0.086 0.914 6 C 0.055 3.945 7 O -0.370 6.370 8 C 0.641 3.359 9 O -0.569 6.569 10 N -0.606 5.606 11 C 0.282 3.718 12 H 0.045 0.955 13 C -0.144 4.144 14 C -0.514 4.514 15 H 0.035 0.965 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.955 3.045 19 H -0.281 1.281 20 H -0.268 1.268 21 H -0.282 1.282 22 C 0.105 3.895 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.027 0.973 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.265 0.735 36 H 0.089 0.911 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.254 7.664 -9.805 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.208 4.208 4 C -0.143 4.143 5 H 0.105 0.895 6 C -0.018 4.018 7 O -0.282 6.282 8 C 0.394 3.606 9 O -0.456 6.456 10 N -0.350 5.350 11 C 0.181 3.819 12 H 0.063 0.937 13 C -0.203 4.203 14 C -0.553 4.553 15 H 0.054 0.946 16 C -0.182 4.182 17 N -0.556 5.556 18 Si 0.781 3.219 19 H -0.207 1.207 20 H -0.193 1.193 21 H -0.208 1.208 22 C -0.017 4.017 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.058 7.214 -9.257 18.313 hybrid contribution 0.872 -0.798 0.114 1.187 sum -13.187 6.416 -9.143 17.281 Atomic orbital electron populations 1.21917 0.93309 1.02603 1.02829 1.20989 0.97038 0.96384 0.95077 1.21895 1.01189 0.95095 1.02650 1.22162 0.93663 0.96234 1.02247 0.89536 1.23960 1.02203 0.91885 0.83765 1.86632 1.24375 1.71900 1.45342 1.17953 0.79728 0.81187 0.81703 1.90931 1.68714 1.47339 1.38641 1.47686 1.13946 1.31785 1.41607 1.18570 0.75393 0.96170 0.91775 0.93740 1.21987 1.02002 0.97413 0.98873 1.21413 0.95308 0.99717 1.38863 0.94627 1.25511 0.98139 0.99468 0.95055 1.69944 1.11643 1.31723 1.42282 0.85556 0.78389 0.80020 0.77910 1.20652 1.19308 1.20802 1.21896 0.94653 0.93918 0.91247 0.92382 0.90988 0.91760 0.89763 0.92875 0.90937 0.92524 0.90314 0.83914 0.95416 0.95083 0.91022 0.92619 0.89300 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.85 71.98 0.64 -1.06 16 2 C -0.08 -1.14 2.48 -10.79 -0.03 -1.16 16 3 C -0.15 -2.18 8.89 71.98 0.64 -1.54 16 4 C -0.12 -2.80 2.06 -10.59 -0.02 -2.82 16 5 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 6 C 0.06 1.36 6.16 72.15 0.44 1.80 16 7 O -0.37 -14.37 10.50 -51.14 -0.54 -14.91 16 8 C 0.64 30.58 7.59 129.95 0.99 31.56 16 9 O -0.57 -33.10 13.69 19.93 0.27 -32.82 16 10 N -0.61 -26.54 2.79 -935.95 -2.61 -29.14 16 11 C 0.28 14.67 2.62 44.25 0.12 14.78 16 12 H 0.04 2.32 7.83 -2.38 -0.02 2.31 16 13 C -0.14 -7.63 8.87 71.98 0.64 -6.99 16 14 C -0.51 -30.17 7.40 25.60 0.19 -29.98 16 15 H 0.04 2.21 7.34 -2.91 -0.02 2.19 16 16 C 0.02 0.97 5.30 84.65 0.45 1.42 16 17 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 18 Si 0.96 46.49 29.54 68.60 2.03 48.52 16 19 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 22 C 0.10 3.20 5.02 86.51 0.43 3.63 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.06 0.66 6.43 -2.39 -0.02 0.64 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 0.87 6.76 -2.39 -0.02 0.85 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.14 2.45 6.42 -2.39 -0.02 2.44 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.03 1.76 6.07 -2.38 -0.01 1.74 16 34 H 0.07 4.06 6.07 -2.39 -0.01 4.05 16 35 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.09 2.52 7.08 -2.39 -0.02 2.51 16 37 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 Total: -1.00 -72.48 289.92 4.92 -67.56 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.04 Total: 4.09 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 4.49 Total: 9.64 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.37 Total: -82.07 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.26 Total: -47.73 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -72.48 4.92 -67.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.930 kcal (2) G-P(sol) polarization free energy of solvation -72.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds