Wall clock time and date at job start Mon Mar 30 2020 06:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34637 * 117.00323 * 2 1 4 4 O 1.21511 * 119.99694 * 359.97438 * 3 2 1 5 5 N 1.34769 * 120.00032 * 180.02562 * 3 2 1 6 6 C 1.46504 * 120.00210 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.46904 * 325.00171 * 6 5 3 8 8 C 1.52997 * 109.47209 * 84.99820 * 6 5 3 9 9 C 1.53000 * 109.47467 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.46882 * 300.00201 * 9 8 6 11 11 C 1.53004 * 109.47178 * 59.99925 * 10 9 8 12 12 H 1.09003 * 109.47149 * 59.99803 * 11 10 9 13 13 C 1.53003 * 109.47102 * 179.97438 * 11 10 9 14 14 C 1.50703 * 109.47038 * 294.99974 * 13 11 10 15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 11 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.52995 * 109.47327 * 205.00469 * 6 5 3 23 23 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46719 * 300.00053 * 1 2 3 25 25 H 1.08995 * 109.46750 * 59.99635 * 1 2 3 26 26 H 0.96999 * 120.00224 * 0.02562 * 5 3 2 27 27 H 1.09007 * 109.47330 * 300.00978 * 8 6 5 28 28 H 1.09003 * 109.46901 * 60.00349 * 8 6 5 29 29 H 1.09003 * 109.47007 * 60.00130 * 9 8 6 30 30 H 1.08998 * 109.46813 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.47457 * 299.99948 * 10 9 8 32 32 H 1.09000 * 109.47381 * 179.97438 * 10 9 8 33 33 H 1.09003 * 109.46825 * 175.00298 * 13 11 10 34 34 H 1.08996 * 109.47396 * 54.99871 * 13 11 10 35 35 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 36 36 H 1.08991 * 109.47466 * 60.00029 * 22 6 5 37 37 H 1.09003 * 109.46885 * 299.99714 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.1996 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0744 2.5754 -0.0011 7 1 3.4891 3.2812 -0.5905 8 6 4.1945 3.0872 1.4357 9 6 4.8887 4.4507 1.4351 10 6 6.2847 4.3119 0.8248 11 6 6.1646 3.8001 -0.6121 12 1 5.5790 4.5057 -1.2013 13 6 7.5607 3.6619 -1.2226 14 6 8.1963 5.0236 -1.3362 15 1 7.6582 5.9000 -1.0064 16 6 9.4645 5.1508 -1.8622 17 7 10.1197 4.0837 -2.2643 18 14 10.2525 6.8385 -2.0024 19 1 9.9154 7.4345 -3.3202 20 1 11.7268 6.7082 -1.8807 21 1 9.7420 7.7149 -0.9177 22 6 5.4705 2.4361 -0.6113 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3632 0.5139 -0.8899 26 1 3.9375 0.4565 -0.0013 27 1 3.1998 3.1864 1.8705 28 1 4.7798 2.3814 2.0251 29 1 4.3030 5.1563 0.8458 30 1 4.9745 4.8150 2.4588 31 1 6.8704 3.6063 1.4140 32 1 6.7791 5.2833 0.8240 33 1 7.4813 3.2142 -2.2132 34 1 8.1750 3.0263 -0.5848 35 1 9.7105 3.2073 -2.1911 36 1 5.3850 2.0715 -1.6348 37 1 6.0558 1.7302 -0.0219 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:58 Heat of formation + Delta-G solvation = -140.074389 kcal Electronic energy + Delta-G solvation = -17590.408198 eV Core-core repulsion = 14751.394196 eV Total energy + Delta-G solvation = -2839.014002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.64461 -39.89721 -37.56840 -36.13001 -34.96915 -32.70267 -30.84102 -28.38921 -27.97944 -25.16415 -23.67468 -22.83977 -21.66402 -20.96349 -19.62737 -18.79367 -17.97279 -17.51748 -16.60820 -15.69137 -15.63615 -15.38315 -15.36117 -14.99469 -14.81503 -14.37229 -13.93964 -13.60349 -13.23028 -12.98262 -12.91196 -12.50003 -12.39981 -12.28478 -11.92673 -11.87682 -11.87510 -11.79302 -11.46485 -11.31012 -11.03753 -10.53949 -10.48178 -10.20028 -8.62321 -6.31287 1.16171 1.53901 1.62446 1.68073 1.79756 2.59193 3.21356 3.24038 3.66181 3.78212 4.02025 4.18576 4.26834 4.33988 4.35838 4.41058 4.52510 4.54968 4.65620 4.67568 4.81600 4.98105 5.03181 5.06888 5.12676 5.23307 5.29918 5.35381 5.36943 5.46223 5.55770 5.69735 6.09315 6.26302 6.35228 6.66029 7.24803 7.48942 8.78722 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049619 B = 0.004494 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.165334 B = 6229.341748 C = 6506.802904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.375 6.375 3 C 0.643 3.357 4 O -0.607 6.607 5 N -0.693 5.693 6 C 0.171 3.829 7 H 0.072 0.928 8 C -0.119 4.119 9 C -0.108 4.108 10 C -0.101 4.101 11 C -0.064 4.064 12 H 0.050 0.950 13 C 0.017 3.983 14 C -0.605 4.605 15 H 0.052 0.948 16 C -0.042 4.042 17 N -0.943 5.943 18 Si 1.115 2.885 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.268 1.268 22 C -0.110 4.110 23 H 0.137 0.863 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.418 0.582 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.051 0.949 33 H -0.016 1.016 34 H -0.008 1.008 35 H 0.255 0.745 36 H 0.062 0.938 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.081 -7.258 7.363 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.396 3.604 4 O -0.499 6.499 5 N -0.352 5.352 6 C 0.068 3.932 7 H 0.090 0.910 8 C -0.158 4.158 9 C -0.146 4.146 10 C -0.138 4.138 11 C -0.083 4.083 12 H 0.069 0.931 13 C -0.021 4.021 14 C -0.643 4.643 15 H 0.070 0.930 16 C -0.239 4.239 17 N -0.581 5.581 18 Si 0.937 3.063 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.148 4.148 23 H 0.155 0.845 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.255 0.745 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.002 0.998 34 H 0.011 0.989 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.140 -6.032 6.878 17.689 hybrid contribution -1.079 -1.232 0.149 1.644 sum -16.219 -7.264 7.027 19.110 Atomic orbital electron populations 1.23504 0.72791 1.05646 1.02544 1.86258 1.25845 1.29954 1.86809 1.18340 0.83852 0.82264 0.75903 1.90972 1.65417 1.36100 1.57364 1.44781 1.02528 1.10982 1.76868 1.20907 0.92355 0.82452 0.97509 0.90968 1.21859 1.00742 0.97609 0.95541 1.21474 0.95165 0.96520 1.01482 1.21443 0.96667 1.00980 0.94736 1.20883 0.95439 0.95204 0.96755 0.93143 1.19194 0.93306 0.95891 0.93661 1.22483 1.03181 0.94342 1.44263 0.93014 1.27306 0.95933 1.07472 0.93139 1.70889 1.40767 0.99510 1.46970 0.82951 0.75288 0.70530 0.77500 1.20156 1.21049 1.19320 1.21791 0.93751 0.98305 1.00956 0.84470 0.91984 0.92250 0.74519 0.91941 0.90531 0.92342 0.90208 0.92640 0.93027 0.99761 0.98938 0.93507 0.91900 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 10.56 113.37 1.20 1.95 16 2 O -0.38 -8.32 10.62 -55.46 -0.59 -8.91 16 3 C 0.64 17.58 8.71 129.79 1.13 18.71 16 4 O -0.61 -20.49 15.80 19.81 0.31 -20.18 16 5 N -0.69 -16.85 5.08 -570.14 -2.90 -19.74 16 6 C 0.17 4.76 2.45 44.99 0.11 4.87 16 7 H 0.07 2.31 7.58 -2.39 -0.02 2.29 16 8 C -0.12 -3.08 5.49 30.59 0.17 -2.92 16 9 C -0.11 -3.03 5.92 30.59 0.18 -2.85 16 10 C -0.10 -3.55 5.01 30.59 0.15 -3.39 16 11 C -0.06 -2.49 2.14 -10.78 -0.02 -2.51 16 12 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 13 C 0.02 0.83 3.76 29.85 0.11 0.94 16 14 C -0.60 -33.91 8.41 25.60 0.22 -33.69 16 15 H 0.05 2.83 7.06 -2.91 -0.02 2.81 16 16 C -0.04 -2.40 5.46 84.65 0.46 -1.94 16 17 N -0.94 -58.51 13.65 21.45 0.29 -58.22 16 18 Si 1.12 50.52 29.90 68.60 2.05 52.57 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 22 C -0.11 -3.41 4.68 30.61 0.14 -3.27 16 23 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.42 8.05 8.71 -92.71 -0.81 7.24 16 27 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 2.04 6.95 -2.39 -0.02 2.02 16 33 H -0.02 -0.86 8.01 -2.39 -0.02 -0.88 16 34 H -0.01 -0.41 8.01 -2.39 -0.02 -0.43 16 35 H 0.26 15.97 7.22 -92.71 -0.67 15.31 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -69.29 302.05 3.36 -65.93 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.34 Total: 12.64 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 3.85 Total: -24.09 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -2.60 Total: -77.96 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.28 Total: -29.09 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.57 kcal Total: -69.29 3.36 -65.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.142 kcal (2) G-P(sol) polarization free energy of solvation -69.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds