Wall clock time and date at job start Mon Mar 30 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47755 * 2 1 4 4 N 1.46498 * 109.47732 * 179.97438 * 3 2 1 5 5 C 1.37192 * 120.00046 * 263.30716 * 4 3 2 6 6 H 1.07998 * 120.00150 * 188.12642 * 5 4 3 7 7 C 1.38889 * 119.99887 * 8.11740 * 5 4 3 8 8 N 1.31466 * 120.00274 * 25.83575 * 7 5 4 9 9 Si 1.86798 * 119.99886 * 205.82935 * 7 5 4 10 10 H 1.48504 * 109.47405 * 84.99179 * 9 7 5 11 11 H 1.48504 * 109.47432 * 204.99093 * 9 7 5 12 12 H 1.48500 * 109.47403 * 324.99277 * 9 7 5 13 13 C 1.34771 * 119.99907 * 83.29721 * 4 3 2 14 14 O 1.21507 * 120.00259 * 180.02562 * 13 4 3 15 15 O 1.34661 * 120.00111 * 0.02562 * 13 4 3 16 16 C 1.45202 * 117.00366 * 179.97438 * 15 13 4 17 17 C 1.54889 * 110.48884 * 93.24190 * 16 15 13 18 18 C 1.55228 * 102.58761 * 156.67903 * 17 16 15 19 19 C 1.54270 * 104.23436 * 322.08567 * 18 17 16 20 20 C 1.53871 * 106.59831 * 23.61110 * 19 18 17 21 21 H 1.08997 * 109.46945 * 300.00152 * 1 2 3 22 22 H 1.09004 * 109.46205 * 59.99713 * 1 2 3 23 23 H 1.08994 * 109.47431 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47108 * 239.99405 * 2 1 3 25 25 H 1.09000 * 109.46916 * 120.00175 * 2 1 3 26 26 H 1.09011 * 109.47024 * 59.99647 * 3 2 1 27 27 H 1.09000 * 109.47052 * 300.00092 * 3 2 1 28 28 H 0.96999 * 119.99949 * 179.97438 * 8 7 5 29 29 H 1.09005 * 110.43011 * 330.70016 * 16 15 13 30 30 H 1.09000 * 110.75331 * 275.07105 * 17 16 15 31 31 H 1.08995 * 110.75289 * 38.43937 * 17 16 15 32 32 H 1.09001 * 110.46740 * 203.39443 * 18 17 16 33 33 H 1.09000 * 110.58300 * 80.83109 * 18 17 16 34 34 H 1.09001 * 110.02957 * 264.32479 * 19 18 17 35 35 H 1.08994 * 110.07314 * 142.91918 * 19 18 17 36 36 H 1.09000 * 110.03261 * 240.71856 * 20 19 18 37 37 H 1.09001 * 110.07624 * 119.30358 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 3.5052 1.4424 0.0006 5 6 4.1906 1.5810 1.1809 6 1 5.2625 1.7129 1.1706 7 6 3.5061 1.5520 2.3890 8 7 2.3600 0.9144 2.4801 9 14 4.2140 2.4188 3.8847 10 1 3.8210 3.8507 3.8592 11 1 3.6889 1.7833 5.1199 12 1 5.6950 2.3117 3.8641 13 6 4.1795 1.3060 -1.1583 14 8 5.3946 1.3055 -1.1578 15 8 3.5067 1.1702 -2.3168 16 6 4.2979 1.0284 -3.5260 17 6 4.5245 -0.4684 -3.8533 18 6 4.8052 -0.4423 -5.3797 19 6 3.8465 0.6373 -5.9233 20 6 3.5240 1.5724 -4.7447 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6768 1.9563 0.8900 27 1 1.6769 1.9563 -0.8900 28 1 1.8822 0.8939 3.3240 29 1 5.2522 1.5443 -3.4190 30 1 5.3834 -0.8576 -3.3066 31 1 3.6298 -1.0513 -3.6347 32 1 4.5804 -1.4114 -5.8253 33 1 5.8413 -0.1652 -5.5742 34 1 2.9321 0.1729 -6.2925 35 1 4.3296 1.1980 -6.7234 36 1 2.4531 1.5618 -4.5419 37 1 3.8508 2.5871 -4.9719 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308963313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:53 Heat of formation + Delta-G solvation = -88.138933 kcal Electronic energy + Delta-G solvation = -18281.144399 eV Core-core repulsion = 15444.382488 eV Total energy + Delta-G solvation = -2836.761911 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.42166 -37.56664 -35.68853 -34.45951 -32.20144 -31.29598 -28.55512 -27.73325 -25.78728 -24.39750 -21.12131 -20.49787 -20.25353 -19.59863 -17.29555 -16.78608 -15.90003 -15.36133 -14.94479 -14.57317 -14.10579 -13.62459 -13.38594 -13.22249 -12.58411 -12.41659 -12.05587 -11.78635 -11.44206 -11.27236 -11.12303 -10.96655 -10.94721 -10.83107 -10.43759 -10.39341 -10.32749 -10.27408 -10.01907 -9.61026 -9.51889 -8.98645 -8.82508 -7.75818 -6.32051 -3.76042 3.19964 3.26216 3.29833 3.54897 4.10272 4.29773 4.74336 4.79842 5.00418 5.12456 5.37349 5.55836 5.64628 5.67906 5.73815 5.83688 5.97067 6.02121 6.09315 6.11159 6.14427 6.33019 6.38693 6.43894 6.45255 6.54055 6.78430 6.92354 6.97605 7.34548 7.43124 7.58470 7.80402 8.19287 8.50109 9.17529 9.43825 10.07897 10.69741 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030478 B = 0.006980 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.461817 B = 4010.478715 C = 4621.905296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C 0.135 3.865 4 N -0.428 5.428 5 C -0.302 4.302 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.924 3.076 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.584 3.416 14 O -0.616 6.616 15 O -0.371 6.371 16 C 0.105 3.895 17 C -0.139 4.139 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.123 4.123 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.034 0.966 28 H 0.267 0.733 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -0.850 -10.262 10.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C 0.012 3.988 4 N -0.153 5.153 5 C -0.428 4.428 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.504 5.504 9 Si 0.750 3.250 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.339 3.661 14 O -0.510 6.510 15 O -0.286 6.286 16 C 0.048 3.952 17 C -0.177 4.177 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.161 4.161 21 H 0.072 0.928 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.340 -0.886 -10.157 10.461 hybrid contribution 0.257 0.293 0.759 0.853 sum -2.082 -0.593 -9.398 9.644 Atomic orbital electron populations 1.21582 0.97380 0.99893 1.00469 1.21833 0.93915 0.98366 1.01980 1.21463 0.79700 0.96970 1.00714 1.42706 1.05542 1.64624 1.02456 1.19655 0.94135 1.48066 0.80989 0.87711 1.25144 0.96712 0.96862 0.98577 1.70168 1.16698 1.36935 1.26568 0.85987 0.79398 0.79594 0.79981 1.20387 1.21127 1.19552 1.18109 0.84248 0.82530 0.81225 1.90763 1.12695 1.61371 1.86200 1.86267 1.40253 1.87143 1.14938 1.23216 0.94764 0.95802 0.81458 1.22928 1.02472 0.96823 0.95465 1.22322 0.99474 0.98798 0.95408 1.22060 0.99556 0.96833 0.97252 1.22196 1.01687 0.98965 0.93208 0.92820 0.94441 0.94208 0.94933 0.88579 0.88097 0.94737 0.92311 0.89731 0.90916 0.90734 0.91526 0.91508 0.91619 0.91755 0.90491 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.12 -2.70 5.73 -26.73 -0.15 -2.86 16 3 C 0.13 3.21 4.52 -4.04 -0.02 3.19 16 4 N -0.43 -11.47 2.64 -120.23 -0.32 -11.79 16 5 C -0.30 -8.49 9.43 -14.91 -0.14 -8.63 16 6 H 0.11 3.10 7.31 -52.49 -0.38 2.71 16 7 C 0.03 0.78 4.88 -17.47 -0.09 0.69 16 8 N -0.86 -22.14 8.71 55.49 0.48 -21.66 16 9 Si 0.92 20.52 29.62 -169.99 -5.04 15.48 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.58 15.42 8.29 54.05 0.45 15.87 16 14 O -0.62 -17.68 15.21 -19.28 -0.29 -17.97 16 15 O -0.37 -8.32 8.90 -40.38 -0.36 -8.68 16 16 C 0.10 1.90 3.18 -25.07 -0.08 1.82 16 17 C -0.14 -2.23 6.66 -24.55 -0.16 -2.40 16 18 C -0.12 -1.48 6.84 -24.89 -0.17 -1.65 16 19 C -0.12 -1.35 6.80 -25.61 -0.17 -1.52 16 20 C -0.12 -1.72 6.57 -25.61 -0.17 -1.89 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.10 2.39 6.42 -51.93 -0.33 2.06 16 26 H 0.10 2.51 5.81 -51.92 -0.30 2.21 16 27 H 0.03 0.77 7.60 -51.93 -0.39 0.37 16 28 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.08 1.67 7.20 -51.93 -0.37 1.29 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -29.56 299.51 -7.34 -36.89 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.99 Total: 2.66 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.34 Total: 0.54 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.17 Total: -33.44 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.65 Total: -26.65 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.04 Total: 15.48 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.56 -7.34 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308963313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.244 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds