Wall clock time and date at job start Mon Mar 30 2020 05:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39380 * 119.50671 * 2 1 4 4 C 1.36087 * 120.99296 * 180.02562 * 3 2 1 5 5 C 1.40553 * 119.65544 * 359.97438 * 4 3 2 6 6 C 1.41754 * 119.35011 * 0.24472 * 5 4 3 7 7 C 1.40504 * 119.35086 * 180.28072 * 6 5 4 8 8 C 1.36128 * 119.65613 * 359.75226 * 7 6 5 9 9 C 1.39331 * 120.98886 * 359.97438 * 8 7 6 10 10 C 1.36127 * 120.98941 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.17490 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47088 * 144.99403 * 11 10 9 13 13 N 1.46904 * 109.46983 * 24.99876 * 11 10 9 14 14 C 1.50701 * 109.47151 * 265.00264 * 11 10 9 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99694 * 180.27762 * 14 11 10 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.36102 * 119.49855 * 180.49454 * 2 1 3 23 23 H 1.08995 * 109.47191 * 89.99514 * 1 2 3 24 24 H 1.08993 * 109.47524 * 209.99992 * 1 2 3 25 25 H 1.09001 * 109.46643 * 330.00410 * 1 2 3 26 26 H 1.07993 * 119.50575 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.17283 * 179.97438 * 4 3 2 28 28 H 1.08005 * 120.16789 * 179.73456 * 7 6 5 29 29 H 1.07996 * 119.50617 * 179.97438 * 8 7 6 30 30 H 1.07997 * 119.50412 * 180.02562 * 9 8 7 31 31 H 1.00906 * 110.99862 * 300.00217 * 13 11 10 32 32 H 1.00899 * 111.00096 * 63.95105 * 13 11 10 33 33 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.17025 * 359.50906 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2130 0.0000 4 6 3.5539 1.2483 -0.0005 5 6 4.2807 0.0453 -0.0005 6 6 3.5825 -1.1883 -0.0053 7 6 4.3091 -2.3909 0.0007 8 6 5.6699 -2.3556 0.0059 9 6 6.3561 -1.1430 0.0047 10 6 5.6857 0.0417 -0.0010 11 6 6.4465 1.3426 -0.0016 12 1 5.9056 2.0796 -0.5952 13 7 7.7795 1.1300 -0.5812 14 6 6.5878 1.8425 1.4131 15 1 6.1683 1.2751 2.2307 16 6 7.2472 3.0272 1.6629 17 7 7.7578 3.7183 0.6672 18 14 7.4156 3.6508 3.4156 19 1 6.7593 2.6971 4.3455 20 1 8.8546 3.7703 3.7625 21 1 6.7663 4.9812 3.5323 22 6 2.1771 -1.1845 -0.0102 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 1.6374 2.1388 -0.0004 27 1 4.0723 2.1957 -0.0009 28 1 3.7906 -3.3383 0.0016 29 1 6.2260 -3.2814 0.0109 30 1 7.4361 -1.1430 0.0085 31 1 8.3013 0.4502 -0.0484 32 1 7.7131 0.8563 -1.5500 33 1 8.2214 4.5520 0.8429 34 1 1.6318 -2.1167 -0.0103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309361897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:50 Heat of formation + Delta-G solvation = 18.906649 kcal Electronic energy + Delta-G solvation = -16633.493295 eV Core-core repulsion = 14108.682148 eV Total energy + Delta-G solvation = -2524.811147 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34801 -38.15744 -36.30999 -33.93994 -33.24265 -31.76962 -30.08391 -28.12727 -27.43075 -24.60575 -23.99304 -22.68301 -21.10762 -18.59212 -18.09956 -17.52622 -17.00478 -16.57571 -15.97769 -15.24302 -15.06538 -14.81766 -14.54137 -14.38561 -14.11521 -13.84472 -13.62516 -13.08997 -12.92764 -12.86576 -12.72573 -12.45703 -12.11565 -11.83113 -11.69081 -11.42666 -11.31227 -10.62484 -10.42620 -9.31652 -8.99644 -8.55703 -8.00300 -6.22825 -0.23805 0.18333 1.26177 1.37836 1.40660 1.51132 2.16478 2.44361 3.21437 3.30021 3.81709 3.97705 4.09423 4.15827 4.26645 4.33578 4.45969 4.49222 4.59942 4.65562 4.87993 4.90035 4.97350 5.13420 5.19417 5.23720 5.39959 5.44314 5.51615 5.66129 5.73167 5.75896 5.90852 6.05247 6.18318 6.27272 6.63235 7.06314 7.21937 7.49234 9.01964 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.007995 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.505806 B = 3501.225070 C = 4215.173326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.089 4.089 3 C -0.132 4.132 4 C -0.107 4.107 5 C -0.078 4.078 6 C -0.064 4.064 7 C -0.132 4.132 8 C -0.108 4.108 9 C -0.154 4.154 10 C -0.084 4.084 11 C 0.261 3.739 12 H 0.015 0.985 13 N -0.819 5.819 14 C -0.535 4.535 15 H 0.037 0.963 16 C 0.038 3.962 17 N -0.879 5.879 18 Si 0.945 3.055 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.278 1.278 22 C -0.121 4.121 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.107 0.893 28 H 0.156 0.844 29 H 0.148 0.852 30 H 0.118 0.882 31 H 0.324 0.676 32 H 0.311 0.689 33 H 0.256 0.744 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 -10.926 -1.948 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.089 4.089 3 C -0.150 4.150 4 C -0.125 4.125 5 C -0.079 4.079 6 C -0.064 4.064 7 C -0.150 4.150 8 C -0.126 4.126 9 C -0.173 4.173 10 C -0.086 4.086 11 C 0.151 3.849 12 H 0.032 0.968 13 N -0.347 5.347 14 C -0.573 4.573 15 H 0.056 0.944 16 C -0.165 4.165 17 N -0.515 5.515 18 Si 0.770 3.230 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.139 4.139 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.153 0.847 27 H 0.125 0.875 28 H 0.173 0.827 29 H 0.166 0.834 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.379 -9.965 -1.848 15.238 hybrid contribution 0.413 -0.043 0.730 0.840 sum -10.966 -10.008 -1.118 14.888 Atomic orbital electron populations 1.20840 0.88450 1.03792 1.03288 1.19990 0.97990 0.92313 0.98560 1.20983 0.93400 0.98988 1.01629 1.21216 0.95183 0.97415 0.98684 1.18269 0.93321 0.93947 1.02346 1.18456 0.94737 0.92833 1.00352 1.21220 0.94236 0.97289 1.02223 1.21082 0.94958 0.97737 0.98825 1.20800 1.00294 0.92418 1.03739 1.21421 0.93855 0.98443 0.94916 1.17812 0.85203 0.87475 0.94374 0.96761 1.59014 1.18560 1.53260 1.03879 1.20989 1.37774 1.06779 0.91775 0.94448 1.25619 0.94551 0.96554 0.99824 1.70222 1.35224 1.14154 1.31857 0.85744 0.77812 0.78156 0.81253 1.19922 1.20414 1.20418 1.21133 0.91844 0.99054 1.01870 0.89971 0.90011 0.90934 0.84702 0.87475 0.82656 0.83437 0.86422 0.86230 0.87742 0.93445 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.98 71.23 0.71 -1.23 16 2 C -0.09 -2.44 5.84 -20.09 -0.12 -2.55 16 3 C -0.13 -4.35 9.58 22.04 0.21 -4.14 16 4 C -0.11 -4.43 9.28 22.33 0.21 -4.22 16 5 C -0.08 -3.30 5.74 -21.29 -0.12 -3.42 16 6 C -0.06 -2.20 5.74 -21.30 -0.12 -2.33 16 7 C -0.13 -3.89 9.77 22.33 0.22 -3.67 16 8 C -0.11 -3.35 9.95 22.04 0.22 -3.13 16 9 C -0.15 -5.93 9.21 22.04 0.20 -5.72 16 10 C -0.08 -3.76 4.99 -19.80 -0.10 -3.86 16 11 C 0.26 13.51 2.24 43.42 0.10 13.61 16 12 H 0.01 0.84 6.72 -2.39 -0.02 0.83 16 13 N -0.82 -39.69 8.14 -174.94 -1.42 -41.12 16 14 C -0.53 -30.37 8.71 25.60 0.22 -30.14 16 15 H 0.04 2.19 7.74 -2.91 -0.02 2.17 16 16 C 0.04 2.17 5.39 84.65 0.46 2.63 16 17 N -0.88 -52.19 12.78 21.45 0.27 -51.92 16 18 Si 0.94 44.87 29.54 68.60 2.03 46.90 16 19 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 C -0.12 -3.40 9.38 22.33 0.21 -3.19 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.19 8.07 -2.39 -0.02 1.17 16 25 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 26 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 27 H 0.11 5.00 6.49 -2.91 -0.02 4.98 16 28 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.12 4.33 6.22 -2.91 -0.02 4.31 16 31 H 0.32 14.82 7.20 -89.69 -0.65 14.18 16 32 H 0.31 13.55 9.06 -89.69 -0.81 12.74 16 33 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -66.94 285.83 2.84 -64.10 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.34 Total: 33.41 kcal Atomic # 6 Polarization: -53.67 SS G_CDS: 2.29 Total: -51.37 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -1.15 Total: -93.03 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.94 2.84 -64.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309361897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.009 kcal (2) G-P(sol) polarization free energy of solvation -66.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds