Wall clock time and date at job start Mon Mar 30 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.30437 * 2 1 4 4 S 1.83392 * 110.34147 * 237.71861 * 2 1 3 5 5 C 1.83995 * 95.85154 * 221.37708 * 4 2 1 6 6 C 1.55157 * 100.90611 * 35.35160 * 5 4 2 7 7 C 1.52937 * 108.95952 * 318.55745 * 6 5 4 8 8 H 1.08996 * 108.77696 * 269.38224 * 7 6 5 9 9 N 1.46909 * 108.88558 * 150.89745 * 7 6 5 10 10 C 1.46899 * 110.99938 * 86.45968 * 9 7 6 11 11 C 1.52996 * 109.46901 * 175.00299 * 10 9 7 12 12 C 1.50706 * 115.55236 * 305.86586 * 11 10 9 13 13 H 1.07997 * 119.99611 * 144.40350 * 12 11 10 14 14 C 1.37876 * 119.99791 * 324.41096 * 12 11 10 15 15 N 1.31503 * 120.00374 * 4.45300 * 14 12 11 16 16 Si 1.86799 * 119.99583 * 184.44956 * 14 12 11 17 17 H 1.48505 * 109.47519 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47260 * 120.00305 * 16 14 12 19 19 H 1.48504 * 109.47286 * 239.99957 * 16 14 12 20 20 C 1.53006 * 117.49663 * 160.20289 * 11 10 9 21 21 C 1.52997 * 117.49861 * 91.54282 * 11 10 9 22 22 H 1.09001 * 109.47090 * 302.75884 * 1 2 3 23 23 H 1.09000 * 109.47193 * 62.75866 * 1 2 3 24 24 H 1.08992 * 109.47437 * 182.75973 * 1 2 3 25 25 H 1.08998 * 111.13158 * 153.25740 * 5 4 2 26 26 H 1.08994 * 111.13126 * 277.39442 * 5 4 2 27 27 H 1.09001 * 109.59698 * 198.63119 * 6 5 4 28 28 H 1.08999 * 109.60580 * 78.49282 * 6 5 4 29 29 H 1.00897 * 110.99740 * 322.50715 * 9 7 6 30 30 H 1.08998 * 109.47417 * 295.00501 * 10 9 7 31 31 H 1.09002 * 109.46633 * 55.00672 * 10 9 7 32 32 H 0.97003 * 120.00561 * 185.00256 * 15 14 12 33 33 H 1.08988 * 117.49844 * 359.97438 * 20 11 10 34 34 H 1.09005 * 117.49813 * 145.02596 * 20 11 10 35 35 H 1.09002 * 117.49984 * 214.97768 * 21 11 10 36 36 H 1.08997 * 117.50065 * 359.97374 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 16 2.1675 -0.9184 -1.4538 5 6 3.5205 -1.7802 -0.5527 6 6 2.8494 -2.0192 0.8257 7 6 2.0643 -0.7674 1.2199 8 1 2.7179 -0.1092 1.7924 9 7 0.9308 -1.1638 2.0662 10 6 1.3310 -1.2468 3.4771 11 6 0.1015 -1.5390 4.3396 12 6 -1.0545 -0.5876 4.1670 13 1 -2.0687 -0.9537 4.2275 14 6 -0.8171 0.7501 3.9319 15 7 0.4148 1.1810 3.7709 16 14 -2.2457 1.9503 3.8418 17 1 -3.5207 1.2194 4.0553 18 1 -2.0881 2.9872 4.8932 19 1 -2.2640 2.5987 2.5060 20 6 0.3394 -2.1155 5.7367 21 6 -0.2272 -3.0052 4.6275 22 1 -0.3633 0.5561 0.8642 23 1 -0.3633 0.4704 -0.9137 24 1 -0.3634 -1.0264 0.0495 25 1 3.7747 -2.7241 -1.0348 26 1 4.3984 -1.1414 -0.4576 27 1 3.6149 -2.2218 1.5748 28 1 2.1717 -2.8704 0.7599 29 1 0.5322 -2.0356 1.7514 30 1 2.0605 -2.0471 3.6015 31 1 1.7743 -0.2999 3.7853 32 1 0.5882 2.1308 3.6780 33 1 1.3718 -2.2869 6.0413 34 1 -0.3405 -1.8070 6.5310 35 1 -1.2796 -3.2818 4.6924 36 1 0.4322 -3.7618 4.2021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379545844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:42 Heat of formation + Delta-G solvation = 19.416456 kcal Electronic energy + Delta-G solvation = -16235.840282 eV Core-core repulsion = 13846.495193 eV Total energy + Delta-G solvation = -2389.345088 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.35359 -37.73719 -33.99045 -32.94948 -32.58331 -27.62437 -26.91192 -25.21650 -24.08791 -22.88145 -20.82485 -20.64268 -18.24635 -17.51826 -16.57692 -16.50164 -16.01940 -15.41735 -15.06153 -14.78639 -14.44243 -14.08784 -13.87495 -13.40845 -13.21865 -12.88621 -12.79482 -12.78732 -12.29446 -12.23734 -12.02129 -11.88616 -11.85844 -11.59341 -11.23317 -10.73367 -10.66822 -10.42641 -9.94466 -8.76986 -8.62618 -7.76590 -5.92345 0.97514 1.43999 1.45314 1.50770 1.56885 2.54067 3.18285 3.54720 3.66318 3.79772 3.94280 4.09849 4.20703 4.33188 4.44683 4.54022 4.62532 4.67614 4.73985 4.84700 4.93368 4.95560 4.99764 5.07228 5.13691 5.20182 5.32186 5.43568 5.59194 5.64397 5.76691 6.17750 6.53820 6.66044 6.99031 7.07813 7.68922 9.13804 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.009216 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.685872 B = 3037.510377 C = 3868.138003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.006 4.006 3 H 0.080 0.920 4 S -0.348 6.348 5 C -0.048 4.048 6 C -0.144 4.144 7 C 0.093 3.907 8 H 0.066 0.934 9 N -0.638 5.638 10 C 0.127 3.873 11 C 0.034 3.966 12 C -0.490 4.490 13 H 0.034 0.966 14 C 0.060 3.940 15 N -0.871 5.871 16 Si 0.928 3.072 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.284 1.284 20 C -0.211 4.211 21 C -0.200 4.200 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.057 0.943 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.324 0.676 30 H -0.015 1.015 31 H 0.090 0.910 32 H 0.251 0.749 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.445 -4.614 -6.189 10.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 H 0.099 0.901 4 S -0.122 6.122 5 C -0.196 4.196 6 C -0.185 4.185 7 C -0.020 4.020 8 H 0.084 0.916 9 N -0.266 5.266 10 C -0.002 4.002 11 C 0.033 3.967 12 C -0.528 4.528 13 H 0.053 0.947 14 C -0.143 4.143 15 N -0.508 5.508 16 Si 0.757 3.243 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.211 1.211 20 C -0.250 4.250 21 C -0.237 4.237 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.139 0.861 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.003 0.997 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.941 -3.818 -7.387 10.219 hybrid contribution -0.082 0.041 1.438 1.441 sum 5.859 -3.777 -5.949 9.164 Atomic orbital electron populations 1.21247 0.91928 1.02304 0.99834 1.23561 0.99691 0.99184 0.91028 0.90126 1.87737 1.42206 1.60045 1.22227 1.24243 0.96718 1.03053 0.95610 1.23111 1.00166 0.98732 0.96487 1.21923 0.91488 0.95152 0.93397 0.91557 1.60213 1.28521 1.36398 1.01494 1.21414 0.93055 0.98717 0.87053 1.19157 0.95718 0.89676 0.92110 1.20438 0.90633 0.92789 1.48922 0.94734 1.25127 0.96544 0.98821 0.93762 1.69962 1.18923 1.13263 1.48647 0.86008 0.81297 0.79869 0.77174 1.20615 1.21411 1.21052 1.22977 0.99320 1.08223 0.94438 1.22892 0.99515 0.95719 1.05571 0.92202 0.94128 0.92346 0.86092 0.88173 0.89586 0.90715 0.85789 0.99731 0.89262 0.93924 0.90593 0.91475 0.91225 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.41 8.25 71.98 0.59 -2.82 16 2 C -0.01 -0.19 3.92 30.83 0.12 -0.07 16 3 H 0.08 2.75 8.14 -2.38 -0.02 2.74 16 4 S -0.35 -10.25 22.66 -56.49 -1.28 -11.53 16 5 C -0.05 -1.08 7.52 72.72 0.55 -0.53 16 6 C -0.14 -3.73 5.84 31.31 0.18 -3.55 16 7 C 0.09 3.07 2.96 45.13 0.13 3.21 16 8 H 0.07 2.40 7.63 -2.39 -0.02 2.38 16 9 N -0.64 -24.66 3.66 -490.45 -1.80 -26.45 16 10 C 0.13 5.39 4.41 86.30 0.38 5.77 16 11 C 0.03 1.58 2.15 -52.93 -0.11 1.46 16 12 C -0.49 -25.63 8.74 25.60 0.22 -25.41 16 13 H 0.03 1.88 7.82 -2.91 -0.02 1.86 16 14 C 0.06 3.07 5.32 84.66 0.45 3.52 16 15 N -0.87 -44.79 10.12 21.45 0.22 -44.58 16 16 Si 0.93 42.59 29.54 68.60 2.03 44.61 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 C -0.21 -9.06 9.96 30.62 0.30 -8.75 16 21 C -0.20 -8.13 9.92 30.62 0.30 -7.83 16 22 H 0.06 2.58 7.88 -2.39 -0.02 2.56 16 23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 2.11 7.38 -2.39 -0.02 2.09 16 25 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.07 1.96 7.50 -2.39 -0.02 1.95 16 29 H 0.32 12.20 7.63 -89.70 -0.68 11.52 16 30 H -0.02 -0.60 8.07 -2.39 -0.02 -0.62 16 31 H 0.09 4.34 5.71 -2.39 -0.01 4.33 16 32 H 0.25 12.65 8.32 -92.71 -0.77 11.88 16 33 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 35 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -52.57 297.51 2.66 -49.91 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.36 Total: 23.02 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 3.13 Total: -34.98 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.58 Total: -71.03 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -10.25 SS G_CDS: -1.28 Total: -11.53 kcal Total: -52.57 2.66 -49.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379545844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.324 kcal (2) G-P(sol) polarization free energy of solvation -52.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds