Wall clock time and date at job start Mon Mar 30 2020 05:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39370 * 119.51084 * 2 1 4 4 C 1.36098 * 120.99091 * 180.28202 * 3 2 1 5 5 C 1.40536 * 119.65063 * 359.71066 * 4 3 2 6 6 C 1.40540 * 121.28217 * 180.02562 * 5 4 3 7 7 C 1.36091 * 119.65665 * 180.02562 * 6 5 4 8 8 C 1.39376 * 120.98533 * 359.95297 * 7 6 5 9 9 C 1.50704 * 119.50347 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46628 * 200.02562 * 9 8 7 11 11 N 1.46898 * 109.47279 * 320.02053 * 9 8 7 12 12 C 1.50699 * 109.46836 * 80.02486 * 9 8 7 13 13 H 1.07996 * 120.00143 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99514 * 179.97438 * 12 9 8 15 15 N 1.31517 * 119.99645 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 120.00251 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.47355 * 89.99647 * 16 14 12 18 18 H 1.48501 * 109.46788 * 209.99729 * 16 14 12 19 19 H 1.48507 * 109.46707 * 329.99499 * 16 14 12 20 20 C 1.36089 * 120.99181 * 0.02562 * 8 7 6 21 21 C 1.40540 * 119.65387 * 0.02562 * 20 8 7 22 22 C 1.36095 * 119.49925 * 179.71302 * 2 1 3 23 23 H 1.09000 * 109.47001 * 270.29035 * 1 2 3 24 24 H 1.09006 * 109.47113 * 30.28396 * 1 2 3 25 25 H 1.09000 * 109.47901 * 150.28570 * 1 2 3 26 26 H 1.07998 * 119.50525 * 359.97438 * 3 2 1 27 27 H 1.07997 * 120.17524 * 179.73800 * 4 3 2 28 28 H 1.08001 * 120.17338 * 359.97438 * 6 5 4 29 29 H 1.07998 * 119.50902 * 179.97438 * 7 6 5 30 30 H 1.00900 * 111.00411 * 296.04663 * 11 9 8 31 31 H 1.00900 * 110.99613 * 60.00201 * 11 9 8 32 32 H 0.96996 * 119.99675 * 180.02562 * 15 14 12 33 33 H 1.07997 * 120.17251 * 180.02562 * 20 8 7 34 34 H 1.08002 * 120.17715 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2129 0.0000 4 6 3.5540 1.2480 -0.0057 5 6 4.2806 0.0451 -0.0056 6 6 5.6860 0.0414 -0.0109 7 6 6.3562 -1.1430 -0.0111 8 6 5.6697 -2.3560 -0.0052 9 6 6.4456 -3.6479 -0.0062 10 1 5.8032 -4.4572 -0.3533 11 7 7.6032 -3.5233 -0.9020 12 6 6.9220 -3.9488 1.3915 13 1 6.6869 -3.2720 2.1995 14 6 7.6581 -5.0882 1.6385 15 7 8.0743 -5.3506 2.8582 16 14 8.0654 -6.2585 0.2406 17 1 9.3545 -5.8596 -0.3793 18 1 8.1776 -7.6415 0.7697 19 1 6.9878 -6.2047 -0.7798 20 6 4.3093 -2.3912 0.0005 21 6 3.5826 -1.1883 -0.0002 22 6 2.1771 -1.1845 0.0059 23 1 -0.3633 0.0052 1.0277 24 1 -0.3634 0.8875 -0.5183 25 1 -0.3635 -0.8925 -0.5094 26 1 1.6375 2.1388 -0.0004 27 1 4.0725 2.1954 -0.0099 28 1 6.2312 0.9736 -0.0156 29 1 7.4362 -1.1431 -0.0156 30 1 7.3082 -3.3854 -1.8570 31 1 8.2145 -2.7790 -0.6013 32 1 8.5925 -6.1520 3.0319 33 1 3.7908 -3.3386 0.0054 34 1 1.6318 -2.1168 0.0102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380519275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:41 Heat of formation + Delta-G solvation = 31.308753 kcal Electronic energy + Delta-G solvation = -16284.759096 eV Core-core repulsion = 13760.485744 eV Total energy + Delta-G solvation = -2524.273351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10462 -37.24112 -34.46481 -32.51166 -31.82340 -30.92309 -29.00183 -26.59252 -26.23452 -23.24891 -21.95528 -21.60565 -20.21462 -16.96239 -16.87873 -16.01173 -15.77199 -14.70554 -14.43214 -14.18156 -13.93816 -13.85130 -13.31588 -12.98194 -12.76660 -12.58132 -12.27681 -12.11050 -11.92053 -11.35378 -11.12884 -10.82630 -10.61927 -10.47886 -10.08370 -9.78315 -9.57633 -9.26169 -8.55599 -8.01344 -7.69845 -7.43567 -6.02809 -4.13700 0.88939 1.37740 2.43166 3.33017 3.55758 3.59818 3.72779 4.48724 4.63166 4.83052 4.90391 5.13325 5.21717 5.23149 5.35863 5.46963 5.56534 5.56848 5.72240 5.78513 5.82058 5.90448 5.99025 6.06897 6.32016 6.42539 6.57525 6.61236 6.73246 6.79864 6.96800 7.16472 7.25057 7.43953 7.58422 8.11196 8.28438 8.65057 8.97234 9.59737 11.06533 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.005762 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.906867 B = 4857.896178 C = 5114.400341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.101 4.101 5 C -0.067 4.067 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.060 4.060 9 C 0.213 3.787 10 H 0.051 0.949 11 N -0.840 5.840 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.082 3.918 15 N -0.899 5.899 16 Si 0.938 3.062 17 H -0.280 1.280 18 H -0.319 1.319 19 H -0.274 1.274 20 C -0.119 4.119 21 C -0.040 4.040 22 C -0.108 4.108 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.311 0.689 31 H 0.334 0.666 32 H 0.264 0.736 33 H 0.123 0.877 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 11.405 -7.855 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.119 4.119 5 C -0.067 4.067 6 C -0.136 4.136 7 C -0.117 4.117 8 C -0.062 4.062 9 C 0.104 3.896 10 H 0.069 0.931 11 N -0.370 5.370 12 C -0.556 4.556 13 H 0.089 0.911 14 C -0.122 4.122 15 N -0.536 5.536 16 Si 0.770 3.230 17 H -0.206 1.206 18 H -0.248 1.248 19 H -0.200 1.200 20 C -0.138 4.138 21 C -0.040 4.040 22 C -0.126 4.126 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.418 10.541 -7.512 16.616 hybrid contribution -0.013 0.408 -0.638 0.758 sum -10.432 10.950 -8.150 17.180 Atomic orbital electron populations 1.20784 0.91621 1.02374 1.02065 1.19508 0.95818 0.93174 1.01034 1.20587 0.94290 0.97079 1.02794 1.20944 0.94134 0.96897 0.99879 1.18022 0.93596 0.92771 1.02333 1.20916 0.92785 0.98104 1.01793 1.20776 1.00241 0.91921 0.98758 1.20959 0.94312 0.97684 0.93280 1.18788 0.87756 0.88808 0.94285 0.93111 1.59374 1.20740 1.52335 1.04547 1.20736 1.35456 1.08698 0.90726 0.91070 1.25031 0.93818 0.97596 0.95800 1.69960 1.36359 1.26761 1.20471 0.85846 0.79619 0.76410 0.81130 1.20612 1.24825 1.19994 1.20885 0.94027 0.96557 1.02301 1.18112 0.93195 0.93143 0.99579 1.20880 0.92996 0.97641 1.01047 0.91442 0.91904 0.91750 0.86671 0.86158 0.86273 0.86144 0.87728 0.85133 0.92665 0.85889 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.98 36.00 0.36 -0.72 16 2 C -0.10 -1.24 5.84 -104.97 -0.61 -1.85 16 3 C -0.13 -1.64 9.59 -39.93 -0.38 -2.02 16 4 C -0.10 -1.38 9.77 -39.48 -0.39 -1.77 16 5 C -0.07 -1.11 5.74 -106.84 -0.61 -1.72 16 6 C -0.12 -1.91 9.77 -39.49 -0.39 -2.30 16 7 C -0.10 -1.80 9.18 -39.93 -0.37 -2.16 16 8 C -0.06 -1.21 4.85 -104.97 -0.51 -1.72 16 9 C 0.21 4.85 2.32 -70.02 -0.16 4.69 16 10 H 0.05 1.20 7.01 -51.93 -0.36 0.84 16 11 N -0.84 -17.29 6.59 -6.65 -0.04 -17.34 16 12 C -0.52 -14.39 9.28 -34.44 -0.32 -14.71 16 13 H 0.07 2.19 7.98 -52.49 -0.42 1.77 16 14 C 0.08 2.36 5.47 -17.82 -0.10 2.27 16 15 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 16 Si 0.94 23.73 26.03 -169.99 -4.42 19.30 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.32 -8.16 7.11 56.52 0.40 -7.76 16 19 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 20 C -0.12 -2.25 9.36 -39.49 -0.37 -2.62 16 21 C -0.04 -0.70 5.74 -106.83 -0.61 -1.31 16 22 C -0.11 -1.60 9.37 -39.48 -0.37 -1.97 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.51 8.08 -51.93 -0.42 0.10 16 25 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 26 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 27 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.12 2.08 6.60 -52.49 -0.35 1.74 16 30 H 0.31 5.52 9.06 -39.29 -0.36 5.16 16 31 H 0.33 6.54 7.28 -39.29 -0.29 6.25 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.12 2.20 8.00 -52.49 -0.42 1.78 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 284.36 15.07 4.29 4.29 Total: -1.00 -31.50 284.36 -8.55 -40.05 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.31 Total: 8.46 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -4.83 Total: -27.92 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.73 Total: -44.18 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.42 Total: 19.30 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.50 -8.55 -40.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380519275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.358 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds