Wall clock time and date at job start Mon Mar 30 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39370 * 119.51084 * 2 1 4 4 C 1.36098 * 120.99091 * 180.28202 * 3 2 1 5 5 C 1.40536 * 119.65063 * 359.71066 * 4 3 2 6 6 C 1.40540 * 121.28217 * 180.02562 * 5 4 3 7 7 C 1.36091 * 119.65665 * 180.02562 * 6 5 4 8 8 C 1.39376 * 120.98533 * 359.95297 * 7 6 5 9 9 C 1.50704 * 119.50347 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46628 * 200.02562 * 9 8 7 11 11 N 1.46898 * 109.47279 * 320.02053 * 9 8 7 12 12 C 1.50699 * 109.46836 * 80.02486 * 9 8 7 13 13 H 1.07996 * 120.00143 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99514 * 179.97438 * 12 9 8 15 15 N 1.31517 * 119.99645 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 120.00251 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.47355 * 89.99647 * 16 14 12 18 18 H 1.48501 * 109.46788 * 209.99729 * 16 14 12 19 19 H 1.48507 * 109.46707 * 329.99499 * 16 14 12 20 20 C 1.36089 * 120.99181 * 0.02562 * 8 7 6 21 21 C 1.40540 * 119.65387 * 0.02562 * 20 8 7 22 22 C 1.36095 * 119.49925 * 179.71302 * 2 1 3 23 23 H 1.09000 * 109.47001 * 270.29035 * 1 2 3 24 24 H 1.09006 * 109.47113 * 30.28396 * 1 2 3 25 25 H 1.09000 * 109.47901 * 150.28570 * 1 2 3 26 26 H 1.07998 * 119.50525 * 359.97438 * 3 2 1 27 27 H 1.07997 * 120.17524 * 179.73800 * 4 3 2 28 28 H 1.08001 * 120.17338 * 359.97438 * 6 5 4 29 29 H 1.07998 * 119.50902 * 179.97438 * 7 6 5 30 30 H 1.00900 * 111.00411 * 296.04663 * 11 9 8 31 31 H 1.00900 * 110.99613 * 60.00201 * 11 9 8 32 32 H 0.96996 * 119.99675 * 180.02562 * 15 14 12 33 33 H 1.07997 * 120.17251 * 180.02562 * 20 8 7 34 34 H 1.08002 * 120.17715 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2129 0.0000 4 6 3.5540 1.2480 -0.0057 5 6 4.2806 0.0451 -0.0056 6 6 5.6860 0.0414 -0.0109 7 6 6.3562 -1.1430 -0.0111 8 6 5.6697 -2.3560 -0.0052 9 6 6.4456 -3.6479 -0.0062 10 1 5.8032 -4.4572 -0.3533 11 7 7.6032 -3.5233 -0.9020 12 6 6.9220 -3.9488 1.3915 13 1 6.6869 -3.2720 2.1995 14 6 7.6581 -5.0882 1.6385 15 7 8.0743 -5.3506 2.8582 16 14 8.0654 -6.2585 0.2406 17 1 9.3545 -5.8596 -0.3793 18 1 8.1776 -7.6415 0.7697 19 1 6.9878 -6.2047 -0.7798 20 6 4.3093 -2.3912 0.0005 21 6 3.5826 -1.1883 -0.0002 22 6 2.1771 -1.1845 0.0059 23 1 -0.3633 0.0052 1.0277 24 1 -0.3634 0.8875 -0.5183 25 1 -0.3635 -0.8925 -0.5094 26 1 1.6375 2.1388 -0.0004 27 1 4.0725 2.1954 -0.0099 28 1 6.2312 0.9736 -0.0156 29 1 7.4362 -1.1431 -0.0156 30 1 7.3082 -3.3854 -1.8570 31 1 8.2145 -2.7790 -0.6013 32 1 8.5925 -6.1520 3.0319 33 1 3.7908 -3.3386 0.0054 34 1 1.6318 -2.1168 0.0102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380519275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:40 Heat of formation + Delta-G solvation = 11.671847 kcal Electronic energy + Delta-G solvation = -16285.610616 eV Core-core repulsion = 13760.485744 eV Total energy + Delta-G solvation = -2525.124871 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32732 -38.58738 -36.02128 -34.09075 -33.52173 -32.10979 -30.33135 -28.22704 -27.59223 -24.76998 -23.19519 -22.80497 -21.77409 -19.00697 -18.13226 -17.41154 -17.10778 -16.44878 -15.93944 -15.60552 -15.33980 -14.86005 -14.69335 -14.35539 -14.14197 -13.94406 -13.73240 -13.53089 -12.98654 -12.81764 -12.71036 -12.52504 -11.97866 -11.76424 -11.67469 -11.59043 -11.29735 -10.78863 -10.76146 -9.47962 -9.18441 -8.68842 -8.26599 -6.40334 -0.30954 0.14453 1.19009 1.49833 1.56662 1.70443 2.11562 2.51202 3.07825 3.22690 3.71438 3.94601 3.99505 4.07993 4.17602 4.21037 4.36441 4.40962 4.53599 4.57855 4.78936 4.86349 4.88604 5.00842 5.06367 5.18096 5.24191 5.38347 5.43795 5.49866 5.66527 5.70841 5.84434 6.00335 6.10670 6.19223 6.44395 6.73497 6.96270 7.36412 8.86735 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.005762 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.906867 B = 4857.896178 C = 5114.400341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.104 4.104 5 C -0.086 4.086 6 C -0.106 4.106 7 C -0.123 4.123 8 C -0.086 4.086 9 C 0.223 3.777 10 H 0.041 0.959 11 N -0.842 5.842 12 C -0.515 4.515 13 H 0.026 0.974 14 C 0.027 3.973 15 N -0.948 5.948 16 Si 1.003 2.997 17 H -0.274 1.274 18 H -0.323 1.323 19 H -0.262 1.262 20 C -0.133 4.133 21 C -0.059 4.059 22 C -0.132 4.132 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.122 0.878 30 H 0.333 0.667 31 H 0.341 0.659 32 H 0.265 0.735 33 H 0.119 0.881 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.398 13.604 -9.614 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.122 4.122 5 C -0.087 4.087 6 C -0.124 4.124 7 C -0.141 4.141 8 C -0.088 4.088 9 C 0.113 3.887 10 H 0.059 0.941 11 N -0.373 5.373 12 C -0.553 4.553 13 H 0.044 0.956 14 C -0.172 4.172 15 N -0.588 5.588 16 Si 0.833 3.167 17 H -0.200 1.200 18 H -0.253 1.253 19 H -0.186 1.186 20 C -0.152 4.152 21 C -0.059 4.059 22 C -0.150 4.150 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.169 0.831 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.123 12.760 -9.293 19.904 hybrid contribution 0.318 -0.078 -0.055 0.332 sum -11.805 12.683 -9.348 19.687 Atomic orbital electron populations 1.20870 0.88960 1.03845 1.03135 1.19994 0.97831 0.92620 0.98199 1.21079 0.94217 0.98344 1.00658 1.21295 0.94807 0.96925 0.99133 1.18376 0.93972 0.93643 1.02663 1.21259 0.93098 0.98526 0.99510 1.20799 1.00381 0.92116 1.00819 1.20731 0.94737 0.97170 0.96142 1.18396 0.88318 0.90256 0.91725 0.94094 1.59069 1.19954 1.52811 1.05445 1.20945 1.34539 1.07445 0.92359 0.95609 1.25880 0.93956 0.99433 0.97926 1.70090 1.38227 1.27761 1.22690 0.84804 0.79749 0.73906 0.78273 1.19998 1.25306 1.18634 1.20979 0.93889 0.97486 1.02816 1.18330 0.94478 0.92918 1.00172 1.21068 0.92163 0.99184 1.02567 0.90398 0.89747 0.91088 0.83068 0.83182 0.83097 0.86022 0.85400 0.84436 0.92597 0.86277 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.98 71.23 0.71 -1.00 16 2 C -0.09 -1.98 5.84 -20.09 -0.12 -2.10 16 3 C -0.13 -2.64 9.59 22.04 0.21 -2.43 16 4 C -0.10 -2.49 9.77 22.33 0.22 -2.27 16 5 C -0.09 -2.71 5.74 -21.30 -0.12 -2.83 16 6 C -0.11 -3.31 9.77 22.33 0.22 -3.09 16 7 C -0.12 -4.50 9.18 22.04 0.20 -4.30 16 8 C -0.09 -3.55 4.85 -20.09 -0.10 -3.65 16 9 C 0.22 10.40 2.32 43.42 0.10 10.50 16 10 H 0.04 1.98 7.01 -2.39 -0.02 1.96 16 11 N -0.84 -34.27 6.59 -174.95 -1.15 -35.42 16 12 C -0.51 -29.79 9.28 25.60 0.24 -29.56 16 13 H 0.03 1.68 7.98 -2.91 -0.02 1.66 16 14 C 0.03 1.60 5.47 84.66 0.46 2.06 16 15 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 16 Si 1.00 49.70 26.03 68.60 1.79 51.49 16 17 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.32 -16.10 7.11 99.48 0.71 -15.39 16 19 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 20 C -0.13 -5.18 9.36 22.33 0.21 -4.97 16 21 C -0.06 -2.02 5.74 -21.29 -0.12 -2.14 16 22 C -0.13 -3.76 9.37 22.33 0.21 -3.55 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.08 0.97 8.08 -2.38 -0.02 0.95 16 25 H 0.07 1.02 8.07 -2.39 -0.02 1.00 16 26 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 27 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 28 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 29 H 0.12 4.27 6.60 -2.91 -0.02 4.25 16 30 H 0.33 11.41 9.06 -89.69 -0.81 10.60 16 31 H 0.34 13.27 7.28 -89.69 -0.65 12.62 16 32 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 33 H 0.12 4.49 8.00 -2.91 -0.02 4.47 16 34 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -70.54 284.36 2.85 -67.69 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.41 Total: 25.76 kcal Atomic # 6 Polarization: -51.65 SS G_CDS: 2.32 Total: -49.33 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -0.85 Total: -95.60 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.79 Total: 51.49 kcal Total: -70.54 2.85 -67.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380519275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.363 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds