Wall clock time and date at job start Mon Mar 30 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47623 * 2 1 4 4 C 1.36111 * 120.12237 * 264.72839 * 3 2 1 5 5 C 1.39315 * 121.06203 * 180.23172 * 4 3 2 6 6 C 1.36168 * 120.87429 * 0.05975 * 5 4 3 7 7 C 1.40396 * 119.61277 * 359.95880 * 6 5 4 8 8 C 1.40772 * 121.38743 * 180.02562 * 7 6 5 9 9 C 1.36582 * 118.14856 * 179.97438 * 8 7 6 10 10 C 1.50704 * 120.02675 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46845 * 90.00374 * 10 9 8 12 12 H 1.08003 * 120.00564 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99894 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99954 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00000 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47413 * 90.00263 * 15 13 11 17 17 H 1.48501 * 109.47000 * 210.00296 * 15 13 11 18 18 H 1.48497 * 109.46730 * 329.99937 * 15 13 11 19 19 C 1.39337 * 119.94102 * 0.02562 * 9 8 7 20 20 N 1.31078 * 121.75165 * 359.97369 * 19 9 8 21 21 C 1.33693 * 121.31869 * 0.04893 * 20 19 9 22 22 H 1.09004 * 109.46906 * 300.00509 * 1 2 3 23 23 H 1.08997 * 109.47029 * 59.99610 * 1 2 3 24 24 H 1.09001 * 109.47383 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46906 * 239.99491 * 2 1 3 26 26 H 1.09002 * 109.46983 * 119.99912 * 2 1 3 27 27 H 1.08000 * 119.47038 * 0.26963 * 4 3 2 28 28 H 1.08003 * 119.56105 * 179.97438 * 5 4 3 29 29 H 1.08004 * 120.19893 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.92970 * 359.97438 * 8 7 6 31 31 H 1.08997 * 109.47071 * 209.99922 * 10 9 8 32 32 H 1.08996 * 109.47165 * 330.00517 * 10 9 8 33 33 H 0.96995 * 119.99722 * 179.97438 * 14 13 11 34 34 H 1.08000 * 119.12249 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3622 2.0286 -1.1723 5 6 2.8331 3.3396 -1.1946 6 6 2.9779 4.0498 -0.0419 7 6 2.6477 3.4543 1.1859 8 6 2.7824 4.1541 2.3999 9 6 2.4415 3.5110 3.5556 10 6 2.5686 4.2205 4.8792 11 6 1.2786 4.9337 5.1926 12 1 0.4497 4.8791 4.5023 13 6 1.1568 5.6568 6.3602 14 7 0.0311 6.2796 6.6335 15 14 2.5905 5.7519 7.5538 16 1 3.4425 6.9191 7.2122 17 1 2.0734 5.9047 8.9375 18 1 3.3953 4.5074 7.4608 19 6 1.9762 2.1984 3.5099 20 7 1.8520 1.5497 2.3777 21 6 2.1686 2.1209 1.2111 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2564 1.4862 -2.1002 28 1 3.0880 3.7982 -2.1386 29 1 3.3444 5.0653 -0.0718 30 1 3.1453 5.1712 2.4171 31 1 2.7811 3.4929 5.6625 32 1 3.3809 4.9453 4.8263 33 1 -0.0546 6.7880 7.4551 34 1 1.7100 1.7027 4.4317 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527420263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:35 Heat of formation + Delta-G solvation = 31.042684 kcal Electronic energy + Delta-G solvation = -16233.272519 eV Core-core repulsion = 13708.987630 eV Total energy + Delta-G solvation = -2524.284889 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51273 -37.20306 -34.56962 -33.56818 -31.92738 -30.77518 -28.99616 -27.66490 -24.15088 -23.57959 -23.19858 -21.19985 -20.18622 -17.70159 -16.87348 -16.64472 -15.96927 -14.51785 -14.37479 -14.18218 -14.08506 -13.65421 -13.19284 -13.06576 -12.58088 -12.41769 -12.14740 -11.96731 -11.85239 -11.45360 -11.26829 -10.96752 -10.74910 -10.67885 -10.44996 -10.13997 -9.68379 -9.40726 -8.94319 -8.65551 -8.16174 -7.69434 -6.15126 -4.15978 0.78218 1.27501 2.42155 3.23316 3.30121 3.31983 3.33371 4.34234 4.52289 4.67838 4.81379 4.96751 5.15277 5.21175 5.32022 5.36525 5.48272 5.53986 5.56702 5.62600 5.80094 5.90905 5.96422 6.08998 6.20141 6.31633 6.43841 6.48829 6.55727 6.68669 6.76847 6.85947 6.97424 7.21362 7.32216 7.58243 8.36320 8.40949 8.88758 9.43966 10.97583 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.034377 B = 0.005719 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.294028 B = 4895.157555 C = 5250.365864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C -0.053 4.053 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.102 4.102 7 C -0.092 4.092 8 C -0.077 4.077 9 C -0.079 4.079 10 C 0.018 3.982 11 C -0.519 4.519 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.264 1.264 19 C 0.141 3.859 20 N -0.479 5.479 21 C 0.112 3.888 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.033 0.967 32 H 0.027 0.973 33 H 0.266 0.734 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 -8.343 -13.025 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.121 4.121 7 C -0.094 4.094 8 C -0.103 4.103 9 C -0.081 4.081 10 C -0.019 4.019 11 C -0.556 4.556 12 H 0.091 0.909 13 C -0.131 4.131 14 N -0.534 5.534 15 Si 0.705 3.295 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.188 1.188 19 C -0.031 4.031 20 N -0.187 5.187 21 C -0.009 4.009 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.532 -9.120 -13.007 16.821 hybrid contribution 0.870 1.271 0.747 1.712 sum 6.402 -7.849 -12.260 15.903 Atomic orbital electron populations 1.21672 0.94769 1.01294 1.02148 1.20385 0.96227 0.92128 1.02463 1.19505 0.98452 0.96355 0.91062 1.20621 1.00983 0.95337 0.97211 1.20747 1.00630 0.94667 0.98046 1.20949 0.99902 0.99681 0.91546 1.18873 1.00949 0.94926 0.94678 1.21319 0.98647 0.99635 0.90698 1.21024 0.94595 0.94601 0.97916 1.18785 0.98551 0.95478 0.89124 1.20885 0.97882 1.30592 1.06283 0.90867 1.24989 0.95734 0.94729 0.97599 1.69896 1.25357 1.32636 1.25554 0.86799 0.82927 0.79147 0.80619 1.20125 1.21130 1.18831 1.22976 0.92697 0.91679 0.95755 1.67992 1.15871 1.37096 0.97739 1.18637 0.99018 0.90994 0.92282 0.92037 0.93209 0.92719 0.91800 0.90128 0.86134 0.86215 0.85747 0.84750 0.94887 0.95501 0.92457 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 37.16 0.37 -1.38 16 2 C -0.07 -0.96 5.79 -27.89 -0.16 -1.12 16 3 C -0.05 -0.80 5.14 -104.52 -0.54 -1.33 16 4 C -0.12 -1.57 9.56 -39.95 -0.38 -1.95 16 5 C -0.12 -1.56 9.95 -39.93 -0.40 -1.96 16 6 C -0.10 -1.49 9.78 -39.51 -0.39 -1.87 16 7 C -0.09 -1.63 5.74 -106.80 -0.61 -2.25 16 8 C -0.08 -1.46 9.54 -39.22 -0.37 -1.83 16 9 C -0.08 -1.63 5.05 -104.81 -0.53 -2.16 16 10 C 0.02 0.42 4.17 -29.03 -0.12 0.30 16 11 C -0.52 -14.25 9.65 -34.44 -0.33 -14.58 16 12 H 0.07 2.23 7.98 -52.48 -0.42 1.81 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 15 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.26 -5.89 6.54 56.52 0.37 -5.53 16 19 C 0.14 2.73 10.81 -17.46 -0.19 2.54 16 20 N -0.48 -9.02 9.51 -10.98 -0.10 -9.13 16 21 C 0.11 2.02 6.58 -84.86 -0.56 1.46 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 26 H 0.08 1.11 7.72 -51.93 -0.40 0.71 16 27 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 28 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 29 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.03 0.73 7.15 -51.93 -0.37 0.36 16 32 H 0.03 0.59 7.51 -51.93 -0.39 0.20 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.16 2.77 8.06 -52.49 -0.42 2.34 16 LS Contribution 290.23 15.07 4.37 4.37 Total: -1.00 -30.33 290.23 -8.49 -38.81 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.55 Total: 0.29 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -4.31 Total: -24.22 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.67 Total: -35.26 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.33 -8.49 -38.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527420263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.854 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds