Wall clock time and date at job start Mon Mar 30 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 110.46782 * 2 1 4 4 C 1.54090 * 110.70727 * 237.32110 * 2 1 3 5 5 N 1.47088 * 103.77814 * 241.60688 * 4 2 1 6 6 C 1.46504 * 125.55601 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46883 * 269.70964 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47188 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00218 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00270 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46805 * 90.00351 * 14 12 10 16 16 H 1.48493 * 109.47486 * 210.00418 * 14 12 10 17 17 H 1.48500 * 109.46799 * 330.00563 * 14 12 10 18 18 C 1.34003 * 108.88330 * 359.65668 * 5 4 2 19 19 O 1.21511 * 123.07052 * 180.20929 * 18 5 4 20 20 O 1.33774 * 113.85432 * 0.23108 * 18 5 4 21 21 H 1.09000 * 109.47466 * 298.82410 * 1 2 3 22 22 H 1.08999 * 109.47314 * 58.82915 * 1 2 3 23 23 H 1.09001 * 109.47142 * 178.82573 * 1 2 3 24 24 H 1.08998 * 109.47860 * 181.17612 * 3 2 1 25 25 H 1.09001 * 109.46852 * 301.17638 * 3 2 1 26 26 H 1.09000 * 109.47483 * 61.17413 * 3 2 1 27 27 H 1.09001 * 110.66250 * 122.98356 * 4 2 1 28 28 H 1.09007 * 110.46718 * 0.13585 * 4 2 1 29 29 H 1.09001 * 109.46891 * 149.71398 * 6 5 4 30 30 H 1.08993 * 109.47378 * 29.70770 * 6 5 4 31 31 H 1.09001 * 109.46801 * 300.00349 * 7 6 5 32 32 H 1.09001 * 109.46998 * 59.99945 * 7 6 5 33 33 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 34 34 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 35 35 H 1.09000 * 109.47380 * 300.00763 * 9 8 7 36 36 H 1.09001 * 109.46997 * 60.00426 * 9 8 7 37 37 H 0.97007 * 119.99867 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0649 1.4334 0.0000 4 6 2.0748 -0.7782 -1.2132 5 7 2.8341 -1.8832 -0.6083 6 6 3.5564 -2.9238 -1.3444 7 6 2.6227 -4.1085 -1.6010 8 6 3.3773 -5.1954 -2.3691 9 6 2.4438 -6.3803 -2.6252 10 6 3.1868 -7.4507 -3.3823 11 1 4.2215 -7.3010 -3.6534 12 6 2.5461 -8.6215 -3.7280 13 7 1.2863 -8.8040 -3.3975 14 14 3.4672 -9.9486 -4.6659 15 1 4.1125 -10.8775 -3.7036 16 1 2.5149 -10.7032 -5.5195 17 1 4.5067 -9.3201 -5.5201 18 6 2.7631 -1.7790 0.7258 19 8 3.3050 -2.5609 1.4817 20 8 2.0407 -0.7357 1.1492 21 1 -0.3634 0.4954 0.9003 22 1 -0.3634 0.5319 -0.8793 23 1 -0.3633 -1.0275 -0.0211 24 1 3.1545 1.4147 -0.0211 25 1 1.6935 1.9598 -0.8793 26 1 1.7278 1.9471 0.9003 27 1 2.7301 -0.1464 -1.8127 28 1 1.2543 -1.1637 -1.8186 29 1 4.4124 -3.2564 -0.7572 30 1 3.9029 -2.5215 -2.2962 31 1 2.2762 -4.5107 -0.6490 32 1 1.7667 -3.7758 -2.1881 33 1 3.7242 -4.7933 -3.3209 34 1 4.2331 -5.5279 -1.7816 35 1 2.0972 -6.7822 -1.6731 36 1 1.5878 -6.0481 -3.2125 37 1 0.8353 -9.6276 -3.6411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:18 Heat of formation + Delta-G solvation = -96.407897 kcal Electronic energy + Delta-G solvation = -17307.947739 eV Core-core repulsion = 14470.827259 eV Total energy + Delta-G solvation = -2837.120480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.74158 -37.54588 -36.24919 -34.28479 -33.51872 -32.18608 -29.07208 -27.91871 -26.40273 -24.99898 -22.60100 -21.90650 -20.28910 -20.11153 -17.08675 -16.85209 -16.39860 -16.15783 -15.46938 -14.57880 -14.47591 -14.36202 -14.17175 -13.79614 -13.66564 -12.77978 -12.71280 -12.41361 -12.35610 -12.10987 -11.86853 -11.75951 -11.48460 -10.99833 -10.77940 -10.68659 -10.54298 -10.51967 -10.40730 -9.66844 -9.46585 -9.11399 -8.71998 -8.32627 -5.97617 -4.00054 2.46300 2.80503 3.27501 3.33612 3.39582 3.42712 3.87024 4.25127 4.29886 4.47847 4.76755 5.02776 5.05723 5.14201 5.26897 5.29474 5.32538 5.38078 5.45682 5.56208 5.67357 5.70853 5.76616 6.00446 6.12244 6.43319 6.53902 6.75367 6.89811 7.15346 7.39251 7.70183 7.85101 8.02769 8.10484 8.45091 9.07307 9.63924 11.13757 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047690 B = 0.003911 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.983053 B = 7157.915255 C = 7281.489955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.090 3.910 3 C -0.151 4.151 4 C 0.072 3.928 5 N -0.627 5.627 6 C 0.144 3.856 7 C -0.135 4.135 8 C -0.107 4.107 9 C 0.021 3.979 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.640 3.360 19 O -0.522 6.522 20 O -0.326 6.326 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 21.924 2.941 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.052 3.948 3 C -0.209 4.209 4 C -0.051 4.051 5 N -0.375 5.375 6 C 0.024 3.976 7 C -0.174 4.174 8 C -0.146 4.146 9 C -0.016 4.016 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C 0.393 3.607 19 O -0.407 6.407 20 O -0.237 6.237 21 H 0.093 0.907 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.646 21.459 3.548 21.760 hybrid contribution 0.325 -0.827 -0.679 1.119 sum -0.320 20.632 2.868 20.833 Atomic orbital electron populations 1.22076 0.91207 1.04006 1.03758 1.23188 0.96013 0.92941 0.82656 1.22068 1.02109 0.92873 1.03815 1.22956 0.97341 0.88904 0.95941 1.48230 1.54284 1.29450 1.05490 1.21585 0.94585 0.85959 0.95439 1.22071 0.98665 0.95238 1.01429 1.21569 0.99251 0.95826 0.97907 1.19088 0.94335 0.91373 0.96806 1.21274 0.97748 1.01206 1.35644 0.92677 1.25037 0.94899 0.98427 0.96172 1.69974 1.10268 1.26244 1.47082 0.86596 0.79588 0.81936 0.79894 1.20655 1.21257 1.19884 1.18517 0.78630 0.80704 0.82828 1.91051 1.49143 1.42284 1.58176 1.87310 1.64002 1.39228 1.33194 0.90725 0.89859 0.91109 0.91430 0.89884 0.90724 0.89098 0.88838 0.89555 0.89984 0.91867 0.92279 0.93252 0.93075 0.96598 0.96717 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.81 37.15 0.33 -0.74 16 2 C 0.09 0.79 1.48 -90.06 -0.13 0.65 16 3 C -0.15 -0.91 8.79 37.16 0.33 -0.59 16 4 C 0.07 0.65 6.99 -3.15 -0.02 0.62 16 5 N -0.63 -8.39 2.96 -178.84 -0.53 -8.92 16 6 C 0.14 2.02 6.01 -4.04 -0.02 1.99 16 7 C -0.14 -2.33 5.54 -26.73 -0.15 -2.47 16 8 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 C 0.64 10.45 8.85 53.71 0.48 10.92 16 19 O -0.52 -10.75 17.54 -19.12 -0.34 -11.08 16 20 O -0.33 -4.52 10.50 -37.84 -0.40 -4.91 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.60 7.73 -51.93 -0.40 0.20 16 28 H 0.09 0.74 7.73 -51.93 -0.40 0.34 16 29 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -34.61 311.61 -6.99 -41.60 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -6.25 Total: -6.32 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 0.11 Total: -5.27 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.21 Total: -35.58 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.73 Total: -16.00 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.61 -6.99 -41.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.812 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds