Wall clock time and date at job start Mon Mar 30 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 110.46782 * 2 1 4 4 C 1.54090 * 110.70727 * 237.32110 * 2 1 3 5 5 N 1.47088 * 103.77814 * 241.60688 * 4 2 1 6 6 C 1.46504 * 125.55601 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46883 * 269.70964 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47188 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00218 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00270 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46805 * 90.00351 * 14 12 10 16 16 H 1.48493 * 109.47486 * 210.00418 * 14 12 10 17 17 H 1.48500 * 109.46799 * 330.00563 * 14 12 10 18 18 C 1.34003 * 108.88330 * 359.65668 * 5 4 2 19 19 O 1.21511 * 123.07052 * 180.20929 * 18 5 4 20 20 O 1.33774 * 113.85432 * 0.23108 * 18 5 4 21 21 H 1.09000 * 109.47466 * 298.82410 * 1 2 3 22 22 H 1.08999 * 109.47314 * 58.82915 * 1 2 3 23 23 H 1.09001 * 109.47142 * 178.82573 * 1 2 3 24 24 H 1.08998 * 109.47860 * 181.17612 * 3 2 1 25 25 H 1.09001 * 109.46852 * 301.17638 * 3 2 1 26 26 H 1.09000 * 109.47483 * 61.17413 * 3 2 1 27 27 H 1.09001 * 110.66250 * 122.98356 * 4 2 1 28 28 H 1.09007 * 110.46718 * 0.13585 * 4 2 1 29 29 H 1.09001 * 109.46891 * 149.71398 * 6 5 4 30 30 H 1.08993 * 109.47378 * 29.70770 * 6 5 4 31 31 H 1.09001 * 109.46801 * 300.00349 * 7 6 5 32 32 H 1.09001 * 109.46998 * 59.99945 * 7 6 5 33 33 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 34 34 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 35 35 H 1.09000 * 109.47380 * 300.00763 * 9 8 7 36 36 H 1.09001 * 109.46997 * 60.00426 * 9 8 7 37 37 H 0.97007 * 119.99867 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0649 1.4334 0.0000 4 6 2.0748 -0.7782 -1.2132 5 7 2.8341 -1.8832 -0.6083 6 6 3.5564 -2.9238 -1.3444 7 6 2.6227 -4.1085 -1.6010 8 6 3.3773 -5.1954 -2.3691 9 6 2.4438 -6.3803 -2.6252 10 6 3.1868 -7.4507 -3.3823 11 1 4.2215 -7.3010 -3.6534 12 6 2.5461 -8.6215 -3.7280 13 7 1.2863 -8.8040 -3.3975 14 14 3.4672 -9.9486 -4.6659 15 1 4.1125 -10.8775 -3.7036 16 1 2.5149 -10.7032 -5.5195 17 1 4.5067 -9.3201 -5.5201 18 6 2.7631 -1.7790 0.7258 19 8 3.3050 -2.5609 1.4817 20 8 2.0407 -0.7357 1.1492 21 1 -0.3634 0.4954 0.9003 22 1 -0.3634 0.5319 -0.8793 23 1 -0.3633 -1.0275 -0.0211 24 1 3.1545 1.4147 -0.0211 25 1 1.6935 1.9598 -0.8793 26 1 1.7278 1.9471 0.9003 27 1 2.7301 -0.1464 -1.8127 28 1 1.2543 -1.1637 -1.8186 29 1 4.4124 -3.2564 -0.7572 30 1 3.9029 -2.5215 -2.2962 31 1 2.2762 -4.5107 -0.6490 32 1 1.7667 -3.7758 -2.1881 33 1 3.7242 -4.7933 -3.3209 34 1 4.2331 -5.5279 -1.7816 35 1 2.0972 -6.7822 -1.6731 36 1 1.5878 -6.0481 -3.2125 37 1 0.8353 -9.6276 -3.6411 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:17 Heat of formation + Delta-G solvation = -118.741105 kcal Electronic energy + Delta-G solvation = -17308.916180 eV Core-core repulsion = 14470.827259 eV Total energy + Delta-G solvation = -2838.088921 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.74597 -38.72832 -37.55487 -35.90675 -34.54058 -33.94519 -30.72155 -28.41264 -27.59176 -26.46724 -24.23900 -22.87174 -21.87288 -21.33531 -18.47114 -18.19074 -17.80428 -17.34142 -16.63526 -16.47636 -15.88000 -15.33789 -15.02536 -14.84474 -14.46962 -14.31313 -14.00315 -13.69215 -13.45253 -13.23487 -12.89519 -12.85134 -12.73411 -12.39518 -12.35631 -12.28425 -12.09097 -11.75813 -11.66200 -11.41273 -11.38603 -11.16943 -10.55938 -9.91937 -8.20072 -6.31739 1.39979 1.42050 1.43019 1.53137 1.59956 2.40792 2.44353 3.13019 3.17430 3.57307 3.66093 3.89677 4.06457 4.23984 4.35696 4.44644 4.51537 4.64473 4.68143 4.69919 4.76319 4.83610 4.86631 4.96277 5.13858 5.21465 5.22594 5.25916 5.26938 5.45078 5.53621 5.75420 5.85898 6.24462 6.33707 6.86053 6.90875 7.37909 8.91969 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047690 B = 0.003911 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.983053 B = 7157.915255 C = 7281.489955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.080 3.920 3 C -0.147 4.147 4 C 0.068 3.932 5 N -0.623 5.623 6 C 0.151 3.849 7 C -0.124 4.124 8 C -0.095 4.095 9 C 0.021 3.979 10 C -0.543 4.543 11 H 0.064 0.936 12 C -0.004 4.004 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.259 1.259 18 C 0.633 3.367 19 O -0.581 6.581 20 O -0.343 6.343 21 H 0.076 0.924 22 H 0.117 0.883 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.048 0.952 35 H -0.021 1.021 36 H -0.005 1.005 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 23.755 0.841 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 C -0.204 4.204 4 C -0.054 4.054 5 N -0.369 5.369 6 C 0.031 3.969 7 C -0.162 4.162 8 C -0.133 4.133 9 C -0.016 4.016 10 C -0.581 4.581 11 H 0.082 0.918 12 C -0.201 4.201 13 N -0.577 5.577 14 Si 0.792 3.208 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.183 1.183 18 C 0.388 3.612 19 O -0.470 6.470 20 O -0.254 6.254 21 H 0.095 0.905 22 H 0.136 0.864 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.093 0.907 27 H 0.144 0.856 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.141 0.859 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.067 0.933 35 H -0.002 1.002 36 H 0.013 0.987 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.008 23.345 1.422 23.388 hybrid contribution 0.021 -1.332 -0.027 1.332 sum 0.013 22.013 1.395 22.057 Atomic orbital electron populations 1.22139 0.89910 1.03315 1.05530 1.23746 0.97100 0.93891 0.80928 1.22114 1.01782 0.90965 1.05494 1.23380 0.98031 0.87866 0.96133 1.48248 1.53968 1.30005 1.04709 1.21454 0.93129 0.85279 0.97023 1.21886 0.99359 0.95651 0.99344 1.21359 0.97950 0.94553 0.99402 1.19030 0.94811 0.93390 0.94337 1.21750 0.98361 1.02157 1.35862 0.91799 1.26044 0.95787 1.01168 0.97146 1.70116 1.12105 1.27149 1.48306 0.85413 0.78421 0.78510 0.78504 1.20100 1.20688 1.18265 1.18755 0.78392 0.80685 0.83409 1.90988 1.51667 1.44595 1.59765 1.87287 1.63517 1.38801 1.35787 0.90536 0.86445 0.93078 0.91953 0.86449 0.90711 0.85605 0.87388 0.90867 0.85908 0.95113 0.91307 0.91070 0.93348 1.00215 0.98681 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.81 71.98 0.63 -1.14 16 2 C 0.08 1.22 1.48 -10.43 -0.02 1.20 16 3 C -0.15 -1.30 8.79 71.98 0.63 -0.66 16 4 C 0.07 0.99 6.99 86.64 0.61 1.60 16 5 N -0.62 -15.87 2.96 -951.44 -2.82 -18.69 16 6 C 0.15 4.00 6.01 86.38 0.52 4.52 16 7 C -0.12 -4.23 5.54 30.60 0.17 -4.06 16 8 C -0.09 -3.83 5.15 30.59 0.16 -3.67 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 11 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 12 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 13 N -0.94 -58.29 13.29 21.45 0.28 -58.01 16 14 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 18 C 0.63 21.03 8.85 129.91 1.15 22.18 16 19 O -0.58 -25.16 17.54 19.65 0.34 -24.81 16 20 O -0.34 -9.47 10.50 -47.34 -0.50 -9.97 16 21 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.13 1.03 7.73 -2.39 -0.02 1.01 16 28 H 0.11 1.32 7.73 -2.38 -0.02 1.30 16 29 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16 30 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -78.88 311.61 5.06 -73.82 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: 1.02 Total: 0.59 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 4.70 Total: -9.71 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -2.53 Total: -76.70 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.15 Total: -34.78 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -78.88 5.06 -73.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.917 kcal (2) G-P(sol) polarization free energy of solvation -78.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds