Wall clock time and date at job start Mon Mar 30 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47462 * 239.99237 * 2 1 3 5 5 C 1.50695 * 109.47176 * 174.99941 * 4 2 1 6 6 H 1.08006 * 119.99951 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00011 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99733 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00216 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46963 * 90.00347 * 9 7 5 11 11 H 1.48499 * 109.47168 * 210.00219 * 9 7 5 12 12 H 1.48496 * 109.47186 * 330.00250 * 9 7 5 13 13 O 1.42903 * 109.46818 * 119.99336 * 2 1 3 14 14 C 1.42900 * 114.00230 * 272.88656 * 13 2 1 15 15 C 1.52959 * 109.41392 * 150.98039 * 14 13 2 16 16 C 1.53233 * 109.40446 * 183.70102 * 15 14 13 17 17 C 1.51267 * 108.53712 * 305.37597 * 16 15 14 18 18 N 1.27958 * 120.84828 * 231.36238 * 17 16 15 19 19 O 1.41601 * 119.99731 * 359.97438 * 18 17 16 20 20 C 1.51272 * 118.30038 * 51.34897 * 17 16 15 21 21 C 1.52958 * 109.41479 * 271.33652 * 14 13 2 22 22 H 1.09000 * 109.46793 * 64.88086 * 1 2 3 23 23 H 1.08991 * 109.47226 * 184.88370 * 1 2 3 24 24 H 1.08998 * 109.47082 * 304.88739 * 1 2 3 25 25 H 1.08995 * 109.46752 * 295.00327 * 4 2 1 26 26 H 1.08999 * 109.46681 * 55.00137 * 4 2 1 27 27 H 0.97001 * 120.00029 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.35373 * 31.15645 * 14 13 2 29 29 H 1.08996 * 109.48342 * 303.68111 * 15 14 13 30 30 H 1.09000 * 109.48304 * 63.73015 * 15 14 13 31 31 H 1.08998 * 109.62791 * 185.65818 * 16 15 14 32 32 H 1.08998 * 109.77850 * 65.18433 * 16 15 14 33 33 H 0.96700 * 113.99640 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.62159 * 188.93653 * 20 17 16 35 35 H 1.08997 * 109.78451 * 68.45886 * 20 17 16 36 36 H 1.09000 * 109.48075 * 296.27228 * 21 14 13 37 37 H 1.09001 * 109.48628 * 56.31156 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 1 4.0790 -0.0861 -0.5390 7 6 4.2305 -1.1938 -2.3575 8 7 3.5765 -1.8382 -3.2991 9 14 6.0922 -1.0625 -2.4358 10 1 6.7000 -2.2151 -1.7236 11 1 6.5298 -1.0709 -3.8548 12 1 6.5268 0.2027 -1.7913 13 8 2.0063 -0.6735 1.1669 14 6 2.1380 0.1707 2.3123 15 6 1.9344 -0.6586 3.5813 16 6 1.9838 0.2626 4.8048 17 6 3.2810 1.0398 4.7696 18 7 4.0538 1.0732 5.7889 19 8 3.6984 0.3774 6.9698 20 6 3.6415 1.7763 3.4984 21 6 3.5320 0.8002 2.3223 22 1 -0.3633 0.4363 -0.9305 23 1 -0.3633 -1.0238 0.0875 24 1 -0.3633 0.5878 0.8430 25 1 1.7517 -1.7716 -1.2053 26 1 1.6055 -0.2619 -2.1369 27 1 4.0609 -2.2451 -4.0345 28 1 1.3854 0.9580 2.2693 29 1 0.9651 -1.1554 3.5392 30 1 2.7236 -1.4065 3.6574 31 1 1.9397 -0.3352 5.7152 32 1 1.1417 0.9543 4.7800 33 1 4.3439 0.4611 7.6850 34 1 4.6626 2.1509 3.5694 35 1 2.9554 2.6097 3.3476 36 1 4.2835 0.0177 2.4281 37 1 3.6952 1.3372 1.3878 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695892388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:51 Heat of formation + Delta-G solvation = -67.686417 kcal Electronic energy + Delta-G solvation = -17741.014402 eV Core-core repulsion = 14905.139378 eV Total energy + Delta-G solvation = -2835.875023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.16505 -37.37270 -35.64394 -33.25985 -32.07571 -31.10714 -30.67074 -27.35593 -26.32837 -23.24569 -22.96320 -21.03317 -20.03529 -19.11862 -17.07906 -16.52383 -16.22465 -15.76139 -14.62936 -14.41949 -14.28865 -13.98175 -13.59760 -13.35671 -12.84856 -12.68447 -12.44941 -12.20043 -11.83895 -11.54074 -11.43337 -11.24096 -11.14992 -11.05117 -10.68321 -10.53558 -10.33453 -9.96726 -9.74305 -9.58086 -9.24552 -9.15023 -8.58785 -8.31099 -5.94372 -3.94301 1.96138 3.00253 3.36021 3.42143 3.44516 4.25791 4.51027 4.52294 4.84396 5.00845 5.16475 5.32115 5.34969 5.42767 5.52739 5.60479 5.66106 5.77384 5.80017 5.98408 6.00419 6.11514 6.18068 6.20213 6.30056 6.47453 6.54600 6.71542 6.76418 6.95867 7.56967 7.66080 7.70041 8.03670 8.21137 8.48171 9.09841 9.67925 11.17452 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.006132 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.370271 B = 4565.037328 C = 5357.884782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.091 3.909 3 H 0.047 0.953 4 C 0.024 3.976 5 C -0.504 4.504 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 O -0.358 6.358 14 C 0.088 3.912 15 C -0.109 4.109 16 C -0.114 4.114 17 C 0.144 3.856 18 N -0.346 5.346 19 O -0.420 6.420 20 C -0.063 4.063 21 C -0.139 4.139 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.025 0.975 26 H 0.029 0.971 27 H 0.259 0.741 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.398 0.602 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 6.705 14.861 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.034 3.966 3 H 0.065 0.935 4 C -0.013 4.013 5 C -0.543 4.543 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 O -0.277 6.277 14 C 0.030 3.970 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.049 4.049 18 N -0.089 5.089 19 O -0.325 6.325 20 C -0.101 4.101 21 C -0.177 4.177 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.246 0.754 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.866 6.581 14.756 16.409 hybrid contribution 0.720 -0.074 0.267 0.771 sum -2.146 6.507 15.022 16.511 Atomic orbital electron populations 1.22370 0.98356 1.01738 1.00667 1.22423 0.90804 0.96179 0.87241 0.93493 1.19227 0.96320 0.96345 0.89389 1.21147 0.91856 1.33834 1.07446 0.92506 1.24987 0.98156 0.95552 0.95866 1.69958 1.35355 1.36365 1.12234 0.86634 0.86178 0.78432 0.76993 1.20763 1.21388 1.19942 1.88074 1.86467 1.35101 1.18093 1.21920 0.95173 0.92741 0.87209 1.21533 1.03369 0.97963 0.91856 1.21243 0.95219 0.98844 1.00008 1.25472 0.93190 0.93284 0.92980 1.76096 1.24763 1.13990 0.94026 1.88423 1.49847 1.72046 1.22211 1.20676 1.03323 0.97513 0.88601 1.22126 0.99236 0.98985 0.97382 0.92131 0.92385 0.94193 0.95698 0.95267 0.93122 0.92799 0.90605 0.90958 0.89673 0.89693 0.75434 0.89654 0.89083 0.90577 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.45 37.16 0.35 -2.60 16 2 C 0.09 1.85 2.45 -26.73 -0.07 1.78 16 3 H 0.05 0.92 7.47 -51.93 -0.39 0.53 16 4 C 0.02 0.62 4.68 -27.89 -0.13 0.49 16 5 C -0.50 -14.09 8.88 -34.44 -0.31 -14.40 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 O -0.36 -7.21 9.39 -35.23 -0.33 -7.54 16 14 C 0.09 1.36 2.29 -26.77 -0.06 1.30 16 15 C -0.11 -1.49 5.59 -26.63 -0.15 -1.64 16 16 C -0.11 -1.37 5.95 -27.48 -0.16 -1.53 16 17 C 0.14 1.87 6.54 -78.37 -0.51 1.35 16 18 N -0.35 -4.74 12.06 35.86 0.43 -4.30 16 19 O -0.42 -5.08 13.54 -11.47 -0.16 -5.24 16 20 C -0.06 -0.75 6.16 -27.49 -0.17 -0.92 16 21 C -0.14 -2.06 5.51 -26.64 -0.15 -2.21 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.04 0.57 7.75 -51.93 -0.40 0.17 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.05 0.75 7.41 -51.93 -0.38 0.36 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.06 6.92 -51.93 -0.36 0.70 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 2.91 9.28 45.56 0.42 3.33 16 34 H 0.08 0.98 8.13 -51.93 -0.42 0.55 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.36 7.77 -51.93 -0.40 0.95 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -32.12 306.15 -6.46 -38.58 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.28 Total: 0.30 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -1.45 Total: -16.90 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 1.17 Total: -30.63 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.49 Total: -12.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.12 -6.46 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.108 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds