Wall clock time and date at job start Mon Mar 30 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47462 * 239.99237 * 2 1 3 5 5 C 1.50695 * 109.47176 * 174.99941 * 4 2 1 6 6 H 1.08006 * 119.99951 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00011 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99733 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00216 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46963 * 90.00347 * 9 7 5 11 11 H 1.48499 * 109.47168 * 210.00219 * 9 7 5 12 12 H 1.48496 * 109.47186 * 330.00250 * 9 7 5 13 13 O 1.42903 * 109.46818 * 119.99336 * 2 1 3 14 14 C 1.42900 * 114.00230 * 272.88656 * 13 2 1 15 15 C 1.52959 * 109.41392 * 150.98039 * 14 13 2 16 16 C 1.53233 * 109.40446 * 183.70102 * 15 14 13 17 17 C 1.51267 * 108.53712 * 305.37597 * 16 15 14 18 18 N 1.27958 * 120.84828 * 231.36238 * 17 16 15 19 19 O 1.41601 * 119.99731 * 359.97438 * 18 17 16 20 20 C 1.51272 * 118.30038 * 51.34897 * 17 16 15 21 21 C 1.52958 * 109.41479 * 271.33652 * 14 13 2 22 22 H 1.09000 * 109.46793 * 64.88086 * 1 2 3 23 23 H 1.08991 * 109.47226 * 184.88370 * 1 2 3 24 24 H 1.08998 * 109.47082 * 304.88739 * 1 2 3 25 25 H 1.08995 * 109.46752 * 295.00327 * 4 2 1 26 26 H 1.08999 * 109.46681 * 55.00137 * 4 2 1 27 27 H 0.97001 * 120.00029 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.35373 * 31.15645 * 14 13 2 29 29 H 1.08996 * 109.48342 * 303.68111 * 15 14 13 30 30 H 1.09000 * 109.48304 * 63.73015 * 15 14 13 31 31 H 1.08998 * 109.62791 * 185.65818 * 16 15 14 32 32 H 1.08998 * 109.77850 * 65.18433 * 16 15 14 33 33 H 0.96700 * 113.99640 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.62159 * 188.93653 * 20 17 16 35 35 H 1.08997 * 109.78451 * 68.45886 * 20 17 16 36 36 H 1.09000 * 109.48075 * 296.27228 * 21 14 13 37 37 H 1.09001 * 109.48628 * 56.31156 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 1 4.0790 -0.0861 -0.5390 7 6 4.2305 -1.1938 -2.3575 8 7 3.5765 -1.8382 -3.2991 9 14 6.0922 -1.0625 -2.4358 10 1 6.7000 -2.2151 -1.7236 11 1 6.5298 -1.0709 -3.8548 12 1 6.5268 0.2027 -1.7913 13 8 2.0063 -0.6735 1.1669 14 6 2.1380 0.1707 2.3123 15 6 1.9344 -0.6586 3.5813 16 6 1.9838 0.2626 4.8048 17 6 3.2810 1.0398 4.7696 18 7 4.0538 1.0732 5.7889 19 8 3.6984 0.3774 6.9698 20 6 3.6415 1.7763 3.4984 21 6 3.5320 0.8002 2.3223 22 1 -0.3633 0.4363 -0.9305 23 1 -0.3633 -1.0238 0.0875 24 1 -0.3633 0.5878 0.8430 25 1 1.7517 -1.7716 -1.2053 26 1 1.6055 -0.2619 -2.1369 27 1 4.0609 -2.2451 -4.0345 28 1 1.3854 0.9580 2.2693 29 1 0.9651 -1.1554 3.5392 30 1 2.7236 -1.4065 3.6574 31 1 1.9397 -0.3352 5.7152 32 1 1.1417 0.9543 4.7800 33 1 4.3439 0.4611 7.6850 34 1 4.6626 2.1509 3.5694 35 1 2.9554 2.6097 3.3476 36 1 4.2835 0.0177 2.4281 37 1 3.6952 1.3372 1.3878 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695892388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:51 Heat of formation + Delta-G solvation = -89.541578 kcal Electronic energy + Delta-G solvation = -17741.962113 eV Core-core repulsion = 14905.139378 eV Total energy + Delta-G solvation = -2836.822734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.35188 -38.61193 -36.77259 -35.14539 -33.51784 -32.15984 -32.13392 -29.23304 -27.43403 -25.11217 -24.13257 -22.22924 -21.65598 -20.13850 -18.47432 -18.03419 -17.80072 -16.91468 -16.53419 -15.62901 -15.43797 -15.16733 -14.96224 -14.62235 -14.23404 -14.01948 -13.74566 -13.45437 -13.31628 -13.21531 -13.00761 -12.70739 -12.55203 -12.49869 -12.25337 -12.18419 -11.85542 -11.36203 -11.22773 -11.05065 -10.68038 -10.52726 -10.52342 -10.08258 -8.14164 -6.21227 0.98895 1.40346 1.41955 1.51848 2.13700 2.44204 2.92787 3.21535 3.53579 3.80103 3.91519 4.14053 4.22776 4.29917 4.35152 4.43246 4.50409 4.54313 4.61253 4.69602 4.80500 4.95494 5.01860 5.07643 5.12009 5.22481 5.31208 5.35021 5.41663 5.52268 5.61236 5.87085 5.90655 6.30205 6.73532 6.83650 6.92764 7.45454 8.98142 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.006132 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.370271 B = 4565.037328 C = 5357.884782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 H 0.056 0.944 4 C 0.025 3.975 5 C -0.517 4.517 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.956 3.044 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.260 1.260 13 O -0.388 6.388 14 C 0.083 3.917 15 C -0.102 4.102 16 C -0.104 4.104 17 C 0.136 3.864 18 N -0.363 5.363 19 O -0.426 6.426 20 C -0.054 4.054 21 C -0.135 4.135 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.074 0.926 25 H -0.011 1.011 26 H 0.011 0.989 27 H 0.261 0.739 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.416 0.584 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.050 0.950 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 8.288 16.417 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 H 0.075 0.925 4 C -0.012 4.012 5 C -0.555 4.555 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.184 1.184 13 O -0.308 6.308 14 C 0.025 3.975 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.057 4.057 18 N -0.106 5.106 19 O -0.335 6.335 20 C -0.092 4.092 21 C -0.174 4.174 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.007 0.993 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.267 0.733 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.069 0.931 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.893 8.181 16.338 18.500 hybrid contribution 0.734 -0.604 -0.156 0.963 sum -2.159 7.577 16.182 17.998 Atomic orbital electron populations 1.22265 0.95513 1.02032 1.02476 1.22133 0.92930 0.95366 0.85433 0.92546 1.19126 0.95507 0.94698 0.91897 1.21552 0.93266 1.33356 1.07294 0.92107 1.25876 1.03129 0.95296 0.95607 1.70090 1.37306 1.37476 1.12980 0.85585 0.80259 0.78854 0.77208 1.20639 1.20829 1.18428 1.88017 1.86848 1.36826 1.19119 1.22201 0.96117 0.93165 0.86018 1.21461 1.02985 0.97736 0.91880 1.21191 0.95764 0.98741 0.98640 1.25667 0.93452 0.93393 0.93141 1.76023 1.25117 1.14691 0.94769 1.88392 1.50940 1.71826 1.22353 1.20637 1.04498 0.97249 0.86798 1.22032 0.98292 0.98808 0.98283 0.91616 0.93192 0.90735 0.99276 0.97044 0.93049 0.90178 0.89811 0.93123 0.90005 0.87186 0.73342 0.89239 0.86228 0.93110 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.32 9.45 71.98 0.68 -4.64 16 2 C 0.10 3.96 2.45 30.59 0.08 4.03 16 3 H 0.06 2.13 7.47 -2.39 -0.02 2.11 16 4 C 0.02 1.30 4.68 29.85 0.14 1.44 16 5 C -0.52 -29.30 8.88 25.60 0.23 -29.08 16 6 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 8 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 9 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 13 O -0.39 -15.44 9.39 -148.98 -1.40 -16.84 16 14 C 0.08 2.40 2.29 30.57 0.07 2.47 16 15 C -0.10 -2.63 5.59 30.66 0.17 -2.46 16 16 C -0.10 -2.23 5.95 30.11 0.18 -2.05 16 17 C 0.14 3.22 6.54 46.90 0.31 3.53 16 18 N -0.36 -9.24 12.06 -40.35 -0.49 -9.73 16 19 O -0.43 -9.47 13.54 -38.79 -0.53 -9.99 16 20 C -0.05 -1.14 6.16 30.10 0.19 -0.96 16 21 C -0.14 -3.86 5.51 30.66 0.17 -3.69 16 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 1.88 7.75 -2.39 -0.02 1.86 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.08 1.92 7.41 -2.39 -0.02 1.90 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.85 6.92 -2.39 -0.02 1.83 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.42 5.30 9.28 -74.06 -0.69 4.61 16 34 H 0.09 1.85 8.13 -2.39 -0.02 1.84 16 35 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 2.28 7.77 -2.39 -0.02 2.26 16 Total: -1.00 -69.93 306.15 2.92 -67.01 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.36 Total: 10.94 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 2.67 Total: -31.07 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -0.20 Total: -67.13 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -1.92 Total: -26.84 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.93 2.92 -67.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.534 kcal (2) G-P(sol) polarization free energy of solvation -69.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds