Wall clock time and date at job start Mon Mar 30 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47323 * 119.99461 * 2 1 3 5 5 C 1.50706 * 109.46931 * 184.99880 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 12 12 H 1.48498 * 109.47295 * 60.00420 * 9 7 5 13 13 O 1.42898 * 109.47402 * 240.00032 * 2 1 3 14 14 C 1.42905 * 114.00272 * 89.99542 * 13 2 1 15 15 H 1.09001 * 109.47946 * 330.00095 * 14 13 2 16 16 C 1.52960 * 109.48250 * 209.97270 * 14 13 2 17 17 C 1.52952 * 109.81513 * 176.43326 * 16 14 13 18 18 C 1.53228 * 109.41476 * 63.58432 * 17 16 14 19 19 C 1.51272 * 108.53316 * 305.37368 * 18 17 16 20 20 N 1.27954 * 120.84807 * 231.32475 * 19 18 17 21 21 O 1.41600 * 120.00243 * 0.02696 * 20 19 18 22 22 C 1.51268 * 118.30337 * 51.35274 * 19 18 17 23 23 H 1.09001 * 109.47351 * 60.00508 * 1 2 3 24 24 H 1.09002 * 109.46700 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47237 * 299.99869 * 1 2 3 26 26 H 1.09000 * 109.46986 * 65.00438 * 4 2 1 27 27 H 1.08992 * 109.46974 * 305.00502 * 4 2 1 28 28 H 0.97000 * 119.99706 * 359.97438 * 8 7 5 29 29 H 1.08997 * 109.41155 * 296.53082 * 16 14 13 30 30 H 1.09007 * 109.41134 * 56.31687 * 16 14 13 31 31 H 1.08996 * 109.47808 * 303.59958 * 17 16 14 32 32 H 1.09006 * 109.48992 * 183.57093 * 17 16 14 33 33 H 1.09003 * 109.62492 * 185.66233 * 18 17 16 34 34 H 1.08997 * 109.78795 * 65.18470 * 18 17 16 35 35 H 0.96701 * 114.00012 * 180.02562 * 21 20 19 36 36 H 1.08995 * 109.63028 * 188.93777 * 22 19 18 37 37 H 1.09000 * 109.78274 * 68.44990 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1933 2.3578 8 7 3.5766 -1.8384 3.2991 9 14 6.0921 -1.0608 2.4367 10 1 6.5872 -1.7619 3.6486 11 1 6.6846 -1.6860 1.2270 12 1 6.4844 0.3701 2.4972 13 8 2.0063 -0.6736 -1.1667 14 6 2.2000 0.1829 -2.2941 15 1 1.4938 1.0119 -2.2464 16 6 1.9705 -0.6094 -3.5822 17 6 2.0886 0.3204 -4.7909 18 6 3.5159 0.8721 -4.8715 19 6 3.8551 1.5231 -3.5488 20 7 4.3197 2.7145 -3.5040 21 8 4.5220 3.4411 -4.7024 22 6 3.6315 0.7295 -2.2806 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7517 -1.7714 1.2057 27 1 1.6053 -0.2616 2.1369 28 1 2.6099 -1.9068 3.2582 29 1 2.7168 -1.4000 -3.6591 30 1 0.9749 -1.0531 -3.5621 31 1 1.3852 1.1461 -4.6845 32 1 1.8619 -0.2354 -5.7008 33 1 3.5780 1.6114 -5.6700 34 1 4.2149 0.0596 -5.0696 35 1 4.8761 4.3309 -4.5678 36 1 3.7679 1.3771 -1.4146 37 1 4.3390 -0.0983 -2.2338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712704491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:57 Heat of formation + Delta-G solvation = -71.292728 kcal Electronic energy + Delta-G solvation = -17873.942155 eV Core-core repulsion = 15037.910750 eV Total energy + Delta-G solvation = -2836.031405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.20424 -37.35389 -35.74824 -33.49042 -32.48179 -31.38067 -29.48120 -27.26072 -26.93165 -23.19352 -22.57108 -21.20562 -20.28656 -19.11179 -17.15768 -16.76263 -16.32584 -15.57757 -14.78313 -14.45779 -14.06472 -13.88049 -13.66238 -13.38218 -12.99070 -12.76068 -12.57011 -12.48045 -11.90857 -11.61368 -11.44572 -11.17529 -10.98520 -10.93031 -10.79922 -10.57058 -10.27219 -10.05917 -9.67415 -9.61657 -9.46450 -8.94894 -8.39162 -8.26875 -6.28309 -3.95506 2.04148 3.06703 3.48308 3.50389 3.68505 4.15648 4.56841 4.60487 4.88868 4.91858 5.05954 5.20382 5.35047 5.48928 5.50782 5.56623 5.66980 5.71958 5.82042 5.88302 5.93132 6.02482 6.07021 6.16365 6.22150 6.36814 6.42241 6.63371 6.76688 6.80273 7.29020 7.40234 7.75163 8.04279 8.28478 8.54080 8.95636 9.74251 11.12361 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021002 B = 0.007027 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.863100 B = 3983.522937 C = 4826.695038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.049 0.951 4 C 0.010 3.990 5 C -0.587 4.587 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 1.065 2.935 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 O -0.355 6.355 14 C 0.099 3.901 15 H 0.054 0.946 16 C -0.120 4.120 17 C -0.108 4.108 18 C -0.119 4.119 19 C 0.145 3.855 20 N -0.341 5.341 21 O -0.423 6.423 22 C -0.088 4.088 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.016 0.984 27 H 0.019 0.981 28 H 0.267 0.733 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 6.137 -15.385 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.039 3.961 3 H 0.067 0.933 4 C -0.026 4.026 5 C -0.625 4.625 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.554 5.554 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 O -0.273 6.273 14 C 0.039 3.961 15 H 0.072 0.928 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.159 4.159 19 C -0.048 4.048 20 N -0.084 5.084 21 O -0.328 6.328 22 C -0.127 4.127 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.246 0.754 36 H 0.108 0.892 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.332 5.725 -14.198 15.367 hybrid contribution -1.322 0.929 -1.447 2.169 sum -2.654 6.655 -15.645 17.207 Atomic orbital electron populations 1.22364 0.98105 1.01935 1.00687 1.22276 0.90835 0.96110 0.86868 0.93278 1.19356 0.97438 0.95696 0.90155 1.21950 0.91521 1.38144 1.10893 0.93125 1.25769 1.06703 0.93697 0.92830 1.70785 1.10231 1.40157 1.34222 0.83599 0.74724 0.76212 0.76098 1.20870 1.21454 1.21536 1.88059 1.86129 1.33805 1.19315 1.21859 0.93433 0.92954 0.87830 0.92758 1.21625 1.03260 0.98536 0.92371 1.21461 0.95440 0.99218 0.98501 1.21302 0.98301 1.01115 0.95133 1.25422 0.90897 0.90761 0.97683 1.76206 1.16078 1.08204 1.07950 1.88382 1.86708 1.32166 1.25527 1.21255 0.99780 0.99130 0.92530 0.93889 0.92329 0.92210 0.96524 0.96257 0.92235 0.90564 0.90850 0.91865 0.90778 0.90003 0.89458 0.75378 0.89188 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.52 37.15 0.35 -2.63 16 2 C 0.10 2.01 2.46 -26.73 -0.07 1.94 16 3 H 0.05 1.02 7.70 -51.93 -0.40 0.62 16 4 C 0.01 0.27 4.00 -27.88 -0.11 0.15 16 5 C -0.59 -16.62 8.88 -34.44 -0.31 -16.92 16 6 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 7 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 8 N -0.92 -28.32 13.65 55.43 0.76 -27.56 16 9 Si 1.06 25.73 29.90 -169.99 -5.08 20.64 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 O -0.35 -7.14 9.39 -35.23 -0.33 -7.47 16 14 C 0.10 1.57 2.41 -26.63 -0.06 1.51 16 15 H 0.05 0.83 7.62 -51.93 -0.40 0.44 16 16 C -0.12 -1.54 5.46 -26.78 -0.15 -1.69 16 17 C -0.11 -1.15 5.94 -26.64 -0.16 -1.31 16 18 C -0.12 -1.42 5.95 -27.48 -0.16 -1.59 16 19 C 0.15 2.13 6.54 -78.38 -0.51 1.62 16 20 N -0.34 -5.28 12.06 35.85 0.43 -4.85 16 21 O -0.42 -5.47 13.54 -11.47 -0.16 -5.63 16 22 C -0.09 -1.43 5.78 -27.48 -0.16 -1.59 16 23 H 0.04 0.64 7.97 -51.93 -0.41 0.23 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 27 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 28 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.99 6.92 -51.93 -0.36 0.63 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.31 9.28 45.56 0.42 3.73 16 36 H 0.09 1.62 8.04 -51.93 -0.42 1.20 16 37 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -32.60 305.90 -6.47 -39.07 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.27 Total: 1.39 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.43 Total: -20.21 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 1.19 Total: -32.41 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.49 Total: -13.10 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.60 -6.47 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712704491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.221 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds