Wall clock time and date at job start Mon Mar 30 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47323 * 119.99461 * 2 1 3 5 5 C 1.50706 * 109.46931 * 184.99880 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 12 12 H 1.48498 * 109.47295 * 60.00420 * 9 7 5 13 13 O 1.42898 * 109.47402 * 240.00032 * 2 1 3 14 14 C 1.42905 * 114.00272 * 89.99542 * 13 2 1 15 15 H 1.09001 * 109.47946 * 330.00095 * 14 13 2 16 16 C 1.52960 * 109.48250 * 209.97270 * 14 13 2 17 17 C 1.52952 * 109.81513 * 176.43326 * 16 14 13 18 18 C 1.53228 * 109.41476 * 63.58432 * 17 16 14 19 19 C 1.51272 * 108.53316 * 305.37368 * 18 17 16 20 20 N 1.27954 * 120.84807 * 231.32475 * 19 18 17 21 21 O 1.41600 * 120.00243 * 0.02696 * 20 19 18 22 22 C 1.51268 * 118.30337 * 51.35274 * 19 18 17 23 23 H 1.09001 * 109.47351 * 60.00508 * 1 2 3 24 24 H 1.09002 * 109.46700 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47237 * 299.99869 * 1 2 3 26 26 H 1.09000 * 109.46986 * 65.00438 * 4 2 1 27 27 H 1.08992 * 109.46974 * 305.00502 * 4 2 1 28 28 H 0.97000 * 119.99706 * 359.97438 * 8 7 5 29 29 H 1.08997 * 109.41155 * 296.53082 * 16 14 13 30 30 H 1.09007 * 109.41134 * 56.31687 * 16 14 13 31 31 H 1.08996 * 109.47808 * 303.59958 * 17 16 14 32 32 H 1.09006 * 109.48992 * 183.57093 * 17 16 14 33 33 H 1.09003 * 109.62492 * 185.66233 * 18 17 16 34 34 H 1.08997 * 109.78795 * 65.18470 * 18 17 16 35 35 H 0.96701 * 114.00012 * 180.02562 * 21 20 19 36 36 H 1.08995 * 109.63028 * 188.93777 * 22 19 18 37 37 H 1.09000 * 109.78274 * 68.44990 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1933 2.3578 8 7 3.5766 -1.8384 3.2991 9 14 6.0921 -1.0608 2.4367 10 1 6.5872 -1.7619 3.6486 11 1 6.6846 -1.6860 1.2270 12 1 6.4844 0.3701 2.4972 13 8 2.0063 -0.6736 -1.1667 14 6 2.2000 0.1829 -2.2941 15 1 1.4938 1.0119 -2.2464 16 6 1.9705 -0.6094 -3.5822 17 6 2.0886 0.3204 -4.7909 18 6 3.5159 0.8721 -4.8715 19 6 3.8551 1.5231 -3.5488 20 7 4.3197 2.7145 -3.5040 21 8 4.5220 3.4411 -4.7024 22 6 3.6315 0.7295 -2.2806 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7517 -1.7714 1.2057 27 1 1.6053 -0.2616 2.1369 28 1 2.6099 -1.9068 3.2582 29 1 2.7168 -1.4000 -3.6591 30 1 0.9749 -1.0531 -3.5621 31 1 1.3852 1.1461 -4.6845 32 1 1.8619 -0.2354 -5.7008 33 1 3.5780 1.6114 -5.6700 34 1 4.2149 0.0596 -5.0696 35 1 4.8761 4.3309 -4.5678 36 1 3.7679 1.3771 -1.4146 37 1 4.3390 -0.0983 -2.2338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712704491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:57 Heat of formation + Delta-G solvation = -93.488662 kcal Electronic energy + Delta-G solvation = -17874.904643 eV Core-core repulsion = 15037.910750 eV Total energy + Delta-G solvation = -2836.993893 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45087 -38.68189 -36.92763 -35.46832 -33.64675 -32.94910 -30.78753 -28.94019 -28.24452 -25.13815 -23.85517 -22.35075 -21.91960 -20.25059 -18.93376 -18.34102 -17.52638 -16.82784 -16.13172 -15.72705 -15.52806 -15.38306 -15.13327 -14.85162 -14.41938 -14.26833 -13.70036 -13.60625 -13.39644 -13.25102 -13.03917 -12.88616 -12.49207 -12.37967 -11.98554 -11.95081 -11.85806 -11.59176 -11.26628 -10.91812 -10.73133 -10.58088 -10.51304 -10.16535 -8.62135 -6.29759 0.92326 1.51682 1.59997 1.78756 2.04667 2.58280 2.81650 3.22855 3.51421 3.80941 3.91005 3.98654 4.09640 4.12766 4.17566 4.32749 4.45093 4.47046 4.55808 4.69786 4.74768 4.88967 4.92746 5.03481 5.05757 5.13713 5.17791 5.22870 5.29408 5.33167 5.40322 5.85509 6.05315 6.24794 6.50704 6.66331 6.81661 7.48658 8.79012 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021002 B = 0.007027 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.863100 B = 3983.522937 C = 4826.695038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.103 3.897 3 H 0.046 0.954 4 C 0.010 3.990 5 C -0.596 4.596 6 H 0.051 0.949 7 C -0.041 4.041 8 N -0.943 5.943 9 Si 1.110 2.890 10 H -0.284 1.284 11 H -0.271 1.271 12 H -0.270 1.270 13 O -0.377 6.377 14 C 0.095 3.905 15 H 0.062 0.938 16 C -0.115 4.115 17 C -0.098 4.098 18 C -0.114 4.114 19 C 0.142 3.858 20 N -0.368 5.368 21 O -0.418 6.418 22 C -0.085 4.085 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.066 0.934 26 H -0.008 1.008 27 H 0.006 0.994 28 H 0.255 0.745 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.417 0.583 36 H 0.062 0.938 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 6.814 -17.660 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.064 0.936 4 C -0.027 4.027 5 C -0.634 4.634 6 H 0.069 0.931 7 C -0.237 4.237 8 N -0.581 5.581 9 Si 0.932 3.068 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.196 1.196 13 O -0.297 6.297 14 C 0.036 3.964 15 H 0.080 0.920 16 C -0.152 4.152 17 C -0.136 4.136 18 C -0.153 4.153 19 C -0.051 4.051 20 N -0.110 5.110 21 O -0.328 6.328 22 C -0.124 4.124 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.010 0.990 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.268 0.732 36 H 0.081 0.919 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.268 6.423 -16.485 17.737 hybrid contribution -1.337 0.785 -0.777 1.735 sum -2.606 7.208 -17.262 18.887 Atomic orbital electron populations 1.22249 0.95021 1.02386 1.02478 1.22009 0.93163 0.94792 0.85493 0.93636 1.19291 0.96302 0.94662 0.92489 1.22336 0.93127 1.37342 1.10556 0.93084 1.27255 1.10954 0.93016 0.92517 1.70914 1.09601 1.42112 1.35505 0.83028 0.69786 0.77350 0.76658 1.20896 1.19641 1.19576 1.88004 1.86458 1.35174 1.20029 1.22130 0.93217 0.93318 0.87713 0.92003 1.21623 1.03731 0.98546 0.91334 1.21439 0.94577 0.99053 0.98529 1.21340 0.99359 1.01339 0.93292 1.25332 0.90931 0.90753 0.98063 1.76077 1.16383 1.08958 1.09611 1.88345 1.86790 1.33412 1.24244 1.21107 1.00017 0.98590 0.92704 0.90986 0.92547 0.91509 0.99002 0.97629 0.93599 0.90760 0.89901 0.91598 0.87808 0.89656 0.88344 0.73249 0.91883 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.43 9.52 71.98 0.69 -4.75 16 2 C 0.10 4.29 2.46 30.59 0.08 4.37 16 3 H 0.05 1.90 7.70 -2.38 -0.02 1.88 16 4 C 0.01 0.50 4.00 29.85 0.12 0.62 16 5 C -0.60 -34.42 8.88 25.60 0.23 -34.19 16 6 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 7 C -0.04 -2.41 5.46 84.66 0.46 -1.95 16 8 N -0.94 -59.61 13.65 21.45 0.29 -59.32 16 9 Si 1.11 51.80 29.90 68.60 2.05 53.85 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 O -0.38 -15.11 9.39 -148.98 -1.40 -16.51 16 14 C 0.10 2.92 2.41 30.66 0.07 2.99 16 15 H 0.06 1.79 7.62 -2.39 -0.02 1.77 16 16 C -0.11 -2.66 5.46 30.56 0.17 -2.49 16 17 C -0.10 -1.75 5.94 30.65 0.18 -1.57 16 18 C -0.11 -2.41 5.95 30.11 0.18 -2.23 16 19 C 0.14 3.97 6.54 46.90 0.31 4.28 16 20 N -0.37 -10.94 12.06 -40.35 -0.49 -11.42 16 21 O -0.42 -9.93 13.54 -38.78 -0.53 -10.46 16 22 C -0.09 -2.75 5.78 30.11 0.17 -2.57 16 23 H 0.07 1.97 7.97 -2.39 -0.02 1.95 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 26 H -0.01 -0.48 8.01 -2.39 -0.02 -0.50 16 27 H 0.01 0.31 8.01 -2.39 -0.02 0.29 16 28 H 0.25 16.24 7.22 -92.71 -0.67 15.57 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.08 1.79 6.92 -2.39 -0.02 1.77 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.42 6.04 9.28 -74.06 -0.69 5.35 16 36 H 0.06 2.32 8.04 -2.39 -0.02 2.30 16 37 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -70.86 305.90 3.04 -67.82 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.46 Total: 13.53 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 2.65 Total: -37.49 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -0.19 Total: -70.74 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.92 Total: -26.97 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.85 kcal Total: -70.86 3.04 -67.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712704491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.671 kcal (2) G-P(sol) polarization free energy of solvation -70.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds