Wall clock time and date at job start Mon Mar 30 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46853 * 2 1 4 4 C 1.53001 * 109.47477 * 239.99733 * 2 1 3 5 5 C 1.50697 * 109.46995 * 174.99956 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 O 1.42904 * 109.47384 * 119.99237 * 2 1 3 14 14 C 1.42899 * 114.00228 * 270.00828 * 13 2 1 15 15 H 1.09002 * 109.48008 * 329.99388 * 14 13 2 16 16 C 1.52955 * 109.48179 * 209.97226 * 14 13 2 17 17 C 1.52954 * 109.81799 * 176.41837 * 16 14 13 18 18 C 1.53234 * 109.40466 * 63.59936 * 17 16 14 19 19 C 1.51267 * 108.53142 * 305.36965 * 18 17 16 20 20 N 1.27952 * 120.84929 * 231.33847 * 19 18 17 21 21 O 1.41599 * 119.99893 * 0.02562 * 20 19 18 22 22 C 1.51269 * 118.31136 * 51.34278 * 19 18 17 23 23 H 1.08995 * 109.47224 * 60.00941 * 1 2 3 24 24 H 1.09009 * 109.46668 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47358 * 300.00203 * 1 2 3 26 26 H 1.08998 * 109.47065 * 54.99382 * 4 2 1 27 27 H 1.09001 * 109.46892 * 294.99646 * 4 2 1 28 28 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.41099 * 296.52587 * 16 14 13 30 30 H 1.09005 * 109.41476 * 56.37636 * 16 14 13 31 31 H 1.09006 * 109.48049 * 183.57515 * 17 16 14 32 32 H 1.08998 * 109.48579 * 303.61637 * 17 16 14 33 33 H 1.08998 * 109.62436 * 65.08454 * 18 17 16 34 34 H 1.09000 * 109.62273 * 185.46769 * 18 17 16 35 35 H 0.96704 * 114.00085 * 179.97438 * 21 20 19 36 36 H 1.09006 * 109.63726 * 188.95068 * 22 19 18 37 37 H 1.09000 * 109.62054 * 68.37885 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0786 -0.0819 -0.5417 7 6 4.2305 -1.1936 -2.3576 8 7 3.5771 -1.8431 -3.2961 9 14 6.0916 -1.0551 -2.4403 10 1 6.6884 -1.6754 -1.2302 11 1 6.5867 -1.7564 -3.6521 12 1 6.4789 0.3770 -2.5048 13 8 2.0064 -0.6735 1.1669 14 6 2.2000 0.1831 2.2941 15 1 2.4627 1.1834 1.9497 16 6 3.3288 -0.3688 3.1663 17 6 3.6027 0.5888 4.3272 18 6 2.3631 0.6688 5.2245 19 6 1.1746 1.0494 4.3697 20 7 0.4143 2.0241 4.6997 21 8 0.6810 2.7624 5.8782 22 6 0.9076 0.2482 3.1146 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6054 -0.2619 -2.1369 27 1 1.7518 -1.7716 -1.2054 28 1 4.0616 -2.2505 -4.0311 29 1 3.0387 -1.3427 3.5607 30 1 4.2319 -0.4757 2.5654 31 1 4.4491 0.2228 4.9084 32 1 3.8320 1.5795 3.9349 33 1 2.1844 -0.3008 5.6892 34 1 2.5183 1.4220 5.9969 35 1 0.0531 3.4790 6.0440 36 1 0.1264 0.7336 2.5294 37 1 0.5938 -0.7603 3.3840 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712704498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:03 Heat of formation + Delta-G solvation = -86.880217 kcal Electronic energy + Delta-G solvation = -17742.900880 eV Core-core repulsion = 14906.193551 eV Total energy + Delta-G solvation = -2836.707329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41588 -38.58947 -36.84380 -35.15096 -33.67824 -32.88156 -30.87469 -29.29755 -28.13309 -25.16688 -23.76455 -22.26454 -21.87090 -20.16057 -18.48336 -18.17730 -17.40987 -16.91592 -16.52723 -16.05685 -15.46218 -15.24377 -15.12401 -14.56158 -14.10987 -13.91438 -13.87362 -13.56055 -13.36853 -13.25802 -13.11819 -12.76159 -12.56920 -12.33286 -12.15700 -11.89404 -11.80946 -11.44485 -11.27384 -11.14834 -10.65040 -10.64123 -10.52512 -10.15675 -8.14593 -6.22821 0.95698 1.41547 1.44535 1.52087 2.07489 2.44728 2.89448 3.20369 3.54032 3.85072 3.97006 4.02955 4.11803 4.19078 4.25141 4.45780 4.46857 4.55326 4.64400 4.70790 4.80867 4.94950 4.97777 5.05314 5.18668 5.24110 5.27718 5.34567 5.35669 5.49458 5.58573 5.84587 5.89319 6.28057 6.63306 6.83445 6.90029 7.44008 8.97323 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031375 B = 0.005694 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.215723 B = 4915.865497 C = 5543.671659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 H 0.047 0.953 4 C 0.026 3.974 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.267 1.267 13 O -0.376 6.376 14 C 0.093 3.907 15 H 0.051 0.949 16 C -0.120 4.120 17 C -0.100 4.100 18 C -0.113 4.113 19 C 0.141 3.859 20 N -0.363 5.363 21 O -0.421 6.421 22 C -0.083 4.083 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.010 0.990 27 H -0.005 1.005 28 H 0.262 0.738 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.417 0.583 36 H 0.085 0.915 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 6.298 17.094 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.041 3.959 3 H 0.066 0.934 4 C -0.011 4.011 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.192 1.192 13 O -0.295 6.295 14 C 0.034 3.966 15 H 0.069 0.931 16 C -0.157 4.157 17 C -0.139 4.139 18 C -0.152 4.152 19 C -0.052 4.052 20 N -0.105 5.105 21 O -0.331 6.331 22 C -0.122 4.122 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.028 0.972 27 H 0.014 0.986 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.267 0.733 36 H 0.103 0.897 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.868 6.157 16.777 18.285 hybrid contribution 0.881 0.325 -0.154 0.951 sum -2.988 6.482 16.624 18.091 Atomic orbital electron populations 1.22393 0.95343 1.02346 1.02398 1.22217 0.93189 0.94840 0.85682 0.93447 1.19128 0.95467 0.94933 0.91617 1.21465 0.93282 1.33681 1.07683 0.92613 1.25893 1.03402 0.95058 0.95401 1.70082 1.37536 1.37004 1.13015 0.85587 0.79823 0.78594 0.77572 1.19370 1.20940 1.19241 1.87996 1.86411 1.35424 1.19695 1.22136 0.93955 0.93737 0.86789 0.93098 1.21627 0.97574 1.00305 0.96206 1.21432 0.97504 0.99383 0.95546 1.21307 0.92508 1.03890 0.97544 1.25380 0.92886 0.91165 0.95758 1.76018 1.24594 1.07431 1.02469 1.88378 1.57249 1.49851 1.37666 1.21299 0.99263 1.00235 0.91365 0.91639 0.92582 0.90968 0.97162 0.98638 0.92919 0.90024 0.91859 0.88475 0.92323 0.87923 0.89919 0.73255 0.89700 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.63 9.32 71.98 0.67 -4.96 16 2 C 0.10 4.08 2.67 30.59 0.08 4.16 16 3 H 0.05 1.94 7.37 -2.39 -0.02 1.93 16 4 C 0.03 1.36 4.68 29.85 0.14 1.50 16 5 C -0.52 -29.96 8.88 25.60 0.23 -29.73 16 6 H 0.06 3.10 7.74 -2.92 -0.02 3.08 16 7 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 8 N -0.94 -57.34 13.29 21.45 0.28 -57.06 16 9 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 O -0.38 -14.99 9.41 -148.98 -1.40 -16.39 16 14 C 0.09 2.85 2.62 30.65 0.08 2.93 16 15 H 0.05 1.63 7.37 -2.39 -0.02 1.61 16 16 C -0.12 -3.16 5.46 30.56 0.17 -2.99 16 17 C -0.10 -2.06 5.94 30.66 0.18 -1.88 16 18 C -0.11 -2.29 5.94 30.11 0.18 -2.12 16 19 C 0.14 3.43 6.54 46.90 0.31 3.74 16 20 N -0.36 -9.32 12.06 -40.36 -0.49 -9.80 16 21 O -0.42 -9.06 13.55 -38.78 -0.53 -9.59 16 22 C -0.08 -2.13 5.45 30.10 0.16 -1.96 16 23 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.07 2.03 5.59 -2.39 -0.01 2.02 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.70 6.93 -2.39 -0.02 1.69 16 35 H 0.42 5.03 9.28 -74.05 -0.69 4.35 16 36 H 0.08 2.21 5.74 -2.38 -0.01 2.19 16 37 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -68.32 301.88 2.92 -65.39 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.37 Total: 11.59 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 2.66 Total: -30.87 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -0.20 Total: -66.86 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -1.93 Total: -25.98 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.32 2.92 -65.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712704498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.487 kcal (2) G-P(sol) polarization free energy of solvation -68.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds