Wall clock time and date at job start Mon Mar 30 2020 06:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47420 * 60.00025 * 8 6 4 10 10 H 1.48503 * 109.47178 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47539 * 299.99718 * 8 6 4 12 12 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 13 13 C 1.46848 * 111.00029 * 184.20767 * 12 2 1 14 14 C 1.53031 * 109.52822 * 174.16131 * 13 12 2 15 15 C 1.53128 * 109.27566 * 59.17925 * 14 13 12 16 16 F 1.39900 * 109.52064 * 62.25633 * 15 14 13 17 17 C 1.53007 * 109.57207 * 182.41249 * 15 14 13 18 18 C 1.53002 * 117.50113 * 13.46105 * 17 15 14 19 19 C 1.53003 * 117.49772 * 304.80261 * 17 15 14 20 20 C 1.53116 * 109.16244 * 302.34703 * 15 14 13 21 21 C 1.46845 * 111.00167 * 60.00119 * 12 2 1 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.46410 * 294.18372 * 13 12 2 27 27 H 1.09003 * 109.46162 * 54.14426 * 13 12 2 28 28 H 1.09001 * 109.50587 * 299.24237 * 14 13 12 29 29 H 1.08997 * 109.50798 * 179.12210 * 14 13 12 30 30 H 1.08997 * 115.54904 * 159.13587 * 17 15 14 31 31 H 1.08999 * 117.49498 * 0.02562 * 18 17 15 32 32 H 1.08992 * 117.49839 * 145.01863 * 18 17 15 33 33 H 1.09004 * 117.49698 * 214.98451 * 19 17 15 34 34 H 1.09001 * 117.49966 * 359.97232 * 19 17 15 35 35 H 1.09008 * 109.50349 * 297.71463 * 20 15 14 36 36 H 1.08993 * 109.50634 * 177.59573 * 20 15 14 37 37 H 1.09002 * 109.46364 * 305.85391 * 21 12 2 38 38 H 1.09002 * 109.46156 * 65.82058 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4200 5.2204 11 1 1.8259 -2.5203 4.0077 12 7 2.0196 -0.6925 -1.1994 13 6 3.4840 -0.7998 -1.1842 14 6 3.9470 -1.6500 -2.3694 15 6 3.4779 -0.9979 -3.6731 16 9 4.0647 0.2656 -3.8013 17 6 3.8852 -1.8736 -4.8598 18 6 4.3532 -3.2988 -4.5584 19 6 5.3654 -2.2366 -4.9947 20 6 1.9538 -0.8536 -3.6429 21 6 1.5487 -0.0266 -2.4206 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7095 1.1617 3.4844 26 1 3.9220 0.1956 -1.2582 27 1 3.8041 -1.2689 -0.2538 28 1 3.5205 -2.6498 -2.2888 29 1 5.0349 -1.7165 -2.3667 30 1 3.3207 -1.7129 -5.7782 31 1 4.3704 -3.6126 -3.5147 32 1 4.0968 -4.0756 -5.2786 33 1 5.7746 -2.3151 -6.0020 34 1 6.0491 -1.8512 -4.2383 35 1 1.4960 -1.8410 -3.5822 36 1 1.6178 -0.3512 -4.5499 37 1 0.4631 0.0659 -2.3883 38 1 1.9957 0.9652 -2.4889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724834400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:52 Heat of formation + Delta-G solvation = -39.966051 kcal Electronic energy + Delta-G solvation = -18387.570215 eV Core-core repulsion = 15565.270026 eV Total energy + Delta-G solvation = -2822.300189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.64301 -39.92508 -38.20568 -35.43145 -33.18576 -32.07185 -30.01316 -27.42055 -25.87219 -23.98618 -23.32273 -22.45388 -21.22689 -20.17102 -18.36904 -17.66659 -16.98053 -16.54907 -16.42212 -15.75355 -15.53997 -15.21850 -15.09665 -14.66153 -14.08355 -13.82453 -13.32247 -13.21872 -13.00147 -12.93871 -12.66927 -12.57597 -12.43730 -12.12336 -11.99576 -11.92270 -11.88597 -11.56637 -11.27400 -11.19138 -10.83429 -10.73788 -10.49189 -8.98435 -8.11767 -6.24196 1.42422 1.44317 1.51848 2.41809 2.82067 3.14837 3.27171 3.39028 3.56165 3.68743 3.93427 4.05949 4.20125 4.25781 4.32438 4.42334 4.56418 4.67196 4.70741 4.74986 4.84282 4.85782 4.95171 5.02586 5.03730 5.08075 5.16246 5.23075 5.26869 5.30232 5.37143 5.52268 5.71023 5.78938 6.24417 6.36402 6.71148 6.89877 7.44940 8.94432 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035266 B = 0.006472 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.765648 B = 4325.170126 C = 4746.430037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.215 3.785 3 H -0.047 1.047 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.530 5.530 13 C 0.063 3.937 14 C -0.126 4.126 15 C 0.145 3.855 16 F -0.227 7.227 17 C -0.188 4.188 18 C -0.160 4.160 19 C -0.172 4.172 20 C -0.119 4.119 21 C 0.046 3.954 22 H 0.059 0.941 23 H 0.030 0.970 24 H 0.036 0.964 25 H 0.262 0.738 26 H -0.001 1.001 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 -7.370 -14.313 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 H -0.029 1.029 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.255 5.255 13 C -0.066 4.066 14 C -0.164 4.164 15 C 0.126 3.874 16 F -0.208 7.208 17 C -0.206 4.206 18 C -0.197 4.197 19 C -0.209 4.209 20 C -0.157 4.157 21 C -0.082 4.082 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.017 0.983 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.142 0.858 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 4.941 -7.688 -14.172 16.863 hybrid contribution 0.492 1.225 1.156 1.754 sum 5.433 -6.464 -13.016 15.515 Atomic orbital electron populations 1.21646 0.96958 0.99494 0.99687 1.19044 0.92910 0.89831 0.87434 1.02946 1.21396 1.31266 1.12385 0.90817 0.91931 1.25757 0.95337 0.95757 1.02038 1.70029 1.37774 1.24215 1.24130 0.85550 0.78634 0.78793 0.78299 1.19768 1.21026 1.19330 1.62086 1.09430 1.51985 1.01997 1.21913 0.88419 0.97121 0.99126 1.22278 1.01376 1.00571 0.92165 1.20563 0.93156 0.78391 0.95240 1.92786 1.86261 1.44614 1.97103 1.22728 0.99875 0.98890 0.99125 1.23234 1.01911 0.90836 1.03692 1.23014 0.91084 1.03162 1.03603 1.22085 0.93501 1.02680 0.97458 1.22144 1.00691 0.94616 0.90733 0.92212 0.95163 0.94503 0.92936 0.98251 0.90900 0.88067 0.90024 0.85850 0.87956 0.86518 0.86954 0.89443 0.88266 0.89219 0.90225 0.97690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.75 71.98 0.63 -5.37 16 2 C 0.21 11.35 2.06 44.17 0.09 11.44 16 3 H -0.05 -2.84 8.14 -2.39 -0.02 -2.86 16 4 C -0.52 -29.04 7.86 25.60 0.20 -28.84 16 5 H 0.06 3.42 6.40 -2.91 -0.02 3.40 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -54.05 11.32 21.45 0.24 -53.81 16 8 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 N -0.53 -23.28 4.52 -875.51 -3.96 -27.24 16 13 C 0.06 2.57 5.10 86.32 0.44 3.01 16 14 C -0.13 -3.84 3.86 30.65 0.12 -3.72 16 15 C 0.14 4.11 1.06 -10.71 -0.01 4.10 16 16 F -0.23 -7.82 15.97 44.97 0.72 -7.10 16 17 C -0.19 -3.96 5.43 -10.79 -0.06 -4.02 16 18 C -0.16 -2.75 9.66 30.62 0.30 -2.46 16 19 C -0.17 -3.17 9.90 30.62 0.30 -2.87 16 20 C -0.12 -3.42 5.16 30.65 0.16 -3.26 16 21 C 0.05 1.76 5.11 86.33 0.44 2.20 16 22 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 23 H 0.03 1.33 6.28 -2.39 -0.02 1.31 16 24 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.00 -0.04 7.88 -2.38 -0.02 -0.05 16 27 H 0.07 3.21 6.02 -2.39 -0.01 3.19 16 28 H 0.10 2.83 6.59 -2.39 -0.02 2.81 16 29 H 0.08 2.24 7.11 -2.39 -0.02 2.22 16 30 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.10 1.87 5.84 -2.39 -0.01 1.86 16 32 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.09 1.79 7.34 -2.39 -0.02 1.77 16 35 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.08 2.94 6.01 -2.39 -0.01 2.93 16 38 H 0.00 0.20 7.88 -2.39 -0.02 0.18 16 Total: -1.00 -62.93 290.62 3.12 -59.80 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.04 Total: 11.19 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 3.06 Total: -28.80 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.71 Total: -81.05 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.72 Total: -7.10 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -62.93 3.12 -59.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724834400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.838 kcal (2) G-P(sol) polarization free energy of solvation -62.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds