Wall clock time and date at job start Mon Mar 30 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47690 * 2 1 4 4 C 1.42902 * 114.00375 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46993 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.46208 * 176.62213 * 5 4 3 7 7 C 1.53042 * 109.46512 * 56.65734 * 5 4 3 8 8 C 1.53114 * 109.27747 * 180.80235 * 7 5 4 9 9 C 1.53120 * 109.16258 * 57.65425 * 8 7 5 10 10 C 1.53032 * 109.27808 * 302.34270 * 9 8 7 11 11 N 1.46846 * 109.46598 * 296.60210 * 5 4 3 12 12 C 1.46907 * 110.99876 * 305.86007 * 11 5 4 13 13 H 1.08996 * 109.46873 * 55.92041 * 12 11 5 14 14 C 1.52998 * 109.47105 * 175.92410 * 12 11 5 15 15 C 1.50702 * 109.46603 * 295.92346 * 12 11 5 16 16 H 1.07998 * 120.00688 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99389 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00220 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99833 * 179.97438 * 17 15 12 20 20 H 1.48490 * 109.47040 * 90.00207 * 19 17 15 21 21 H 1.48501 * 109.47171 * 210.00397 * 19 17 15 22 22 H 1.48498 * 109.46939 * 330.00197 * 19 17 15 23 23 H 1.08990 * 109.47573 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47029 * 300.00259 * 1 2 3 25 25 H 1.08999 * 109.46921 * 59.99934 * 1 2 3 26 26 H 1.09002 * 109.47029 * 239.99741 * 2 1 3 27 27 H 1.08999 * 109.46921 * 120.00066 * 2 1 3 28 28 H 1.08994 * 109.46888 * 59.99088 * 4 3 2 29 29 H 1.09007 * 109.46745 * 299.99719 * 4 3 2 30 30 H 1.08993 * 109.50123 * 300.74697 * 7 5 4 31 31 H 1.09006 * 109.49933 * 60.82523 * 7 5 4 32 32 H 1.09002 * 109.52014 * 177.56319 * 8 7 5 33 33 H 1.09003 * 109.52280 * 297.68326 * 8 7 5 34 34 H 1.09000 * 109.50095 * 62.28541 * 9 8 7 35 35 H 1.09001 * 109.50303 * 182.40022 * 9 8 7 36 36 H 1.08994 * 109.46331 * 299.16381 * 10 9 8 37 37 H 1.08997 * 109.46056 * 179.19200 * 10 9 8 38 38 H 1.09002 * 109.47211 * 66.87214 * 14 12 11 39 39 H 1.08994 * 109.47305 * 186.87869 * 14 12 11 40 40 H 1.08997 * 109.47070 * 306.87918 * 14 12 11 41 41 H 0.97002 * 119.99915 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9382 -0.0012 6 1 4.9105 3.0246 0.0589 7 6 3.1912 3.6358 1.2043 8 6 3.5723 5.1187 1.1884 9 6 3.1109 5.7421 -0.1318 10 6 3.7475 4.9835 -1.2985 11 7 3.3522 3.5705 -1.2391 12 6 3.8313 2.8397 -2.4200 13 1 3.5228 1.7966 -2.3516 14 6 3.2367 3.4657 -3.6831 15 6 5.3352 2.9158 -2.4817 16 1 5.8804 3.4535 -1.7202 17 6 6.0149 2.2988 -3.5105 18 7 5.3509 1.6444 -4.4381 19 14 7.8789 2.3936 -3.5874 20 1 8.4639 1.2480 -2.8456 21 1 8.3191 2.3422 -5.0048 22 1 8.3356 3.6661 -2.9732 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8333 0.9765 -0.8907 29 1 3.8341 0.9763 0.8893 30 1 2.1069 3.5381 1.1522 31 1 3.5544 3.1759 2.1235 32 1 3.0873 5.6283 2.0211 33 1 4.6538 5.2179 1.2809 34 1 2.0253 5.6776 -0.2049 35 1 3.4171 6.7876 -0.1671 36 1 4.8328 5.0601 -1.2324 37 1 3.4097 5.4159 -2.2403 38 1 3.6418 4.4688 -3.8168 39 1 3.4921 2.8526 -4.5473 40 1 2.1526 3.5219 -3.5850 41 1 5.8291 1.2106 -5.1620 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313484585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:28 Heat of formation + Delta-G solvation = -55.697263 kcal Electronic energy + Delta-G solvation = -19047.463190 eV Core-core repulsion = 16347.941150 eV Total energy + Delta-G solvation = -2699.522040 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.86011 -36.86676 -34.22307 -31.97723 -31.61365 -29.96983 -28.23886 -25.46936 -25.12402 -23.34481 -22.36332 -20.84468 -19.80404 -18.80054 -16.22972 -15.96082 -15.56410 -15.20105 -14.43591 -14.19053 -13.83818 -13.36348 -13.14875 -12.81000 -12.72685 -12.38178 -12.04886 -11.99356 -11.34303 -11.19823 -11.02122 -10.91981 -10.77446 -10.69305 -10.42877 -10.32525 -10.23380 -10.14899 -9.92743 -9.51388 -9.28096 -9.09154 -8.79447 -8.32731 -6.97705 -5.96155 -4.09457 3.25942 3.33715 3.36585 4.29303 4.40435 5.04101 5.28335 5.35940 5.41456 5.43354 5.52578 5.55955 5.69840 5.87261 5.94854 5.99465 6.02371 6.17091 6.21979 6.24574 6.37250 6.41432 6.47213 6.49559 6.58157 6.65349 6.79863 6.89871 7.03548 7.08084 7.14533 7.29661 7.63817 7.76097 7.86123 8.06633 8.24662 8.42974 8.54753 9.02893 9.58238 11.02998 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.009352 C = 0.007477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.889043 B = 2993.196530 C = 3744.062497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.070 3.930 5 C 0.100 3.900 6 H 0.052 0.948 7 C -0.108 4.108 8 C -0.117 4.117 9 C -0.117 4.117 10 C 0.062 3.938 11 N -0.521 5.521 12 C 0.205 3.795 13 H 0.044 0.956 14 C -0.127 4.127 15 C -0.542 4.542 16 H 0.054 0.946 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.884 3.116 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.077 0.923 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 0.703 8.855 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.288 6.288 4 C -0.007 4.007 5 C -0.010 4.010 6 H 0.070 0.930 7 C -0.145 4.145 8 C -0.155 4.155 9 C -0.155 4.155 10 C -0.067 4.067 11 N -0.246 5.246 12 C 0.099 3.901 13 H 0.062 0.938 14 C -0.185 4.185 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.712 3.288 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.969 0.735 8.675 10.556 hybrid contribution 2.329 -0.244 -0.170 2.348 sum -3.640 0.491 8.505 9.264 Atomic orbital electron populations 1.21683 0.94455 1.01342 1.02875 1.22343 0.95082 0.85436 0.99335 1.87964 1.21350 1.24249 1.95211 1.22633 0.80953 0.97266 0.99823 1.21382 0.96799 0.91537 0.91236 0.93013 1.21549 1.02002 0.94441 0.96557 1.21543 1.00207 0.96404 0.97325 1.21625 1.00970 0.97806 0.95067 1.21891 0.97596 0.90032 0.97173 1.62405 1.58874 1.01189 1.02152 1.19325 0.91986 0.93626 0.85195 0.93825 1.21759 0.95989 0.99599 1.01165 1.21759 0.92969 1.33655 1.09762 0.92759 1.24901 0.97819 0.95088 0.95567 1.69904 1.35003 1.34441 1.13097 0.86726 0.86492 0.78339 0.77223 1.20801 1.21206 1.20086 0.91930 0.92378 0.91784 0.93726 0.94585 0.91444 0.94853 0.90806 0.93158 0.93025 0.92900 0.91878 0.92982 0.94909 0.91325 0.95487 0.90414 0.96573 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 37.16 0.38 -1.51 16 2 C 0.06 0.85 6.66 37.16 0.25 1.10 16 3 O -0.37 -6.95 9.44 -35.23 -0.33 -7.28 16 4 C 0.07 1.35 5.14 37.15 0.19 1.54 16 5 C 0.10 1.98 1.87 -67.72 -0.13 1.85 16 6 H 0.05 1.11 6.91 -51.93 -0.36 0.75 16 7 C -0.11 -1.81 5.21 -26.65 -0.14 -1.95 16 8 C -0.12 -1.82 6.00 -26.61 -0.16 -1.98 16 9 C -0.12 -1.93 6.09 -26.65 -0.16 -2.09 16 10 C 0.06 1.24 4.79 -3.84 -0.02 1.22 16 11 N -0.52 -11.35 4.41 -220.14 -0.97 -12.32 16 12 C 0.20 5.11 1.96 -68.86 -0.13 4.97 16 13 H 0.04 1.20 5.90 -51.93 -0.31 0.89 16 14 C -0.13 -3.14 8.42 37.16 0.31 -2.83 16 15 C -0.54 -14.43 7.18 -34.44 -0.25 -14.67 16 16 H 0.05 1.46 5.84 -52.49 -0.31 1.15 16 17 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 18 N -0.89 -24.90 11.40 55.43 0.63 -24.27 16 19 Si 0.88 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 1.49 6.04 -51.93 -0.31 1.17 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.31 7.57 -51.93 -0.39 0.92 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.71 6.68 -51.93 -0.35 0.37 16 37 H 0.07 1.42 6.15 -51.93 -0.32 1.10 16 38 H 0.03 0.64 6.65 -51.93 -0.35 0.30 16 39 H 0.08 2.08 6.29 -51.93 -0.33 1.75 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -27.88 309.05 -8.21 -36.09 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.22 Total: -0.38 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 0.05 Total: -12.58 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.34 Total: -36.59 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.33 Total: -7.28 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.88 -8.21 -36.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313484585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.610 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds