Wall clock time and date at job start Mon Mar 30 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47690 * 2 1 4 4 C 1.42902 * 114.00375 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46993 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.46208 * 176.62213 * 5 4 3 7 7 C 1.53042 * 109.46512 * 56.65734 * 5 4 3 8 8 C 1.53114 * 109.27747 * 180.80235 * 7 5 4 9 9 C 1.53120 * 109.16258 * 57.65425 * 8 7 5 10 10 C 1.53032 * 109.27808 * 302.34270 * 9 8 7 11 11 N 1.46846 * 109.46598 * 296.60210 * 5 4 3 12 12 C 1.46907 * 110.99876 * 305.86007 * 11 5 4 13 13 H 1.08996 * 109.46873 * 55.92041 * 12 11 5 14 14 C 1.52998 * 109.47105 * 175.92410 * 12 11 5 15 15 C 1.50702 * 109.46603 * 295.92346 * 12 11 5 16 16 H 1.07998 * 120.00688 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99389 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00220 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99833 * 179.97438 * 17 15 12 20 20 H 1.48490 * 109.47040 * 90.00207 * 19 17 15 21 21 H 1.48501 * 109.47171 * 210.00397 * 19 17 15 22 22 H 1.48498 * 109.46939 * 330.00197 * 19 17 15 23 23 H 1.08990 * 109.47573 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47029 * 300.00259 * 1 2 3 25 25 H 1.08999 * 109.46921 * 59.99934 * 1 2 3 26 26 H 1.09002 * 109.47029 * 239.99741 * 2 1 3 27 27 H 1.08999 * 109.46921 * 120.00066 * 2 1 3 28 28 H 1.08994 * 109.46888 * 59.99088 * 4 3 2 29 29 H 1.09007 * 109.46745 * 299.99719 * 4 3 2 30 30 H 1.08993 * 109.50123 * 300.74697 * 7 5 4 31 31 H 1.09006 * 109.49933 * 60.82523 * 7 5 4 32 32 H 1.09002 * 109.52014 * 177.56319 * 8 7 5 33 33 H 1.09003 * 109.52280 * 297.68326 * 8 7 5 34 34 H 1.09000 * 109.50095 * 62.28541 * 9 8 7 35 35 H 1.09001 * 109.50303 * 182.40022 * 9 8 7 36 36 H 1.08994 * 109.46331 * 299.16381 * 10 9 8 37 37 H 1.08997 * 109.46056 * 179.19200 * 10 9 8 38 38 H 1.09002 * 109.47211 * 66.87214 * 14 12 11 39 39 H 1.08994 * 109.47305 * 186.87869 * 14 12 11 40 40 H 1.08997 * 109.47070 * 306.87918 * 14 12 11 41 41 H 0.97002 * 119.99915 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9382 -0.0012 6 1 4.9105 3.0246 0.0589 7 6 3.1912 3.6358 1.2043 8 6 3.5723 5.1187 1.1884 9 6 3.1109 5.7421 -0.1318 10 6 3.7475 4.9835 -1.2985 11 7 3.3522 3.5705 -1.2391 12 6 3.8313 2.8397 -2.4200 13 1 3.5228 1.7966 -2.3516 14 6 3.2367 3.4657 -3.6831 15 6 5.3352 2.9158 -2.4817 16 1 5.8804 3.4535 -1.7202 17 6 6.0149 2.2988 -3.5105 18 7 5.3509 1.6444 -4.4381 19 14 7.8789 2.3936 -3.5874 20 1 8.4639 1.2480 -2.8456 21 1 8.3191 2.3422 -5.0048 22 1 8.3356 3.6661 -2.9732 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8333 0.9765 -0.8907 29 1 3.8341 0.9763 0.8893 30 1 2.1069 3.5381 1.1522 31 1 3.5544 3.1759 2.1235 32 1 3.0873 5.6283 2.0211 33 1 4.6538 5.2179 1.2809 34 1 2.0253 5.6776 -0.2049 35 1 3.4171 6.7876 -0.1671 36 1 4.8328 5.0601 -1.2324 37 1 3.4097 5.4159 -2.2403 38 1 3.6418 4.4688 -3.8168 39 1 3.4921 2.8526 -4.5473 40 1 2.1526 3.5219 -3.5850 41 1 5.8291 1.2106 -5.1620 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313484585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:28 Heat of formation + Delta-G solvation = -72.550431 kcal Electronic energy + Delta-G solvation = -19048.193999 eV Core-core repulsion = 16347.941150 eV Total energy + Delta-G solvation = -2700.252848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45245 -38.31338 -36.00856 -33.68613 -33.17250 -31.27200 -30.06458 -27.23735 -26.96359 -24.96079 -23.55868 -22.39019 -21.50617 -20.46175 -18.12523 -17.52511 -17.04144 -16.91882 -16.15767 -15.69346 -15.32304 -14.96366 -14.70051 -14.41429 -14.25683 -13.88578 -13.53183 -13.27692 -13.12988 -12.94058 -12.66309 -12.56062 -12.28557 -12.19717 -12.11350 -12.01596 -11.97806 -11.78402 -11.45883 -11.27573 -10.92116 -10.77761 -10.48871 -10.24158 -8.82054 -8.01814 -6.24924 1.34986 1.37372 1.45886 2.39195 2.92751 3.16200 3.42046 4.02990 4.03843 4.17613 4.22551 4.36088 4.45872 4.49915 4.53879 4.59163 4.66439 4.82654 4.83953 4.91676 4.94988 5.07062 5.08590 5.09864 5.14544 5.16488 5.24299 5.31093 5.31940 5.40097 5.41989 5.55821 5.66447 5.73359 6.02050 6.24594 6.39684 6.49158 6.78565 6.98994 7.46203 8.92890 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.009352 C = 0.007477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.889043 B = 2993.196530 C = 3744.062497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.046 3.954 3 O -0.384 6.384 4 C 0.077 3.923 5 C 0.095 3.905 6 H 0.032 0.968 7 C -0.099 4.099 8 C -0.114 4.114 9 C -0.109 4.109 10 C 0.061 3.939 11 N -0.524 5.524 12 C 0.212 3.788 13 H 0.014 0.986 14 C -0.115 4.115 15 C -0.546 4.546 16 H 0.048 0.952 17 C 0.022 3.978 18 N -0.913 5.913 19 Si 0.944 3.056 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.273 1.273 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.029 0.971 27 H 0.057 0.943 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.012 0.988 37 H 0.057 0.943 38 H 0.026 0.974 39 H 0.054 0.946 40 H 0.025 0.975 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 1.364 10.793 12.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 O -0.303 6.303 4 C 0.000 4.000 5 C -0.014 4.014 6 H 0.050 0.950 7 C -0.136 4.136 8 C -0.152 4.152 9 C -0.147 4.147 10 C -0.067 4.067 11 N -0.248 5.248 12 C 0.104 3.896 13 H 0.032 0.968 14 C -0.173 4.173 15 C -0.585 4.585 16 H 0.066 0.934 17 C -0.178 4.178 18 N -0.552 5.552 19 Si 0.770 3.230 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.198 1.198 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.183 1.400 10.627 12.374 hybrid contribution 2.350 -0.491 -0.766 2.520 sum -3.833 0.909 9.861 10.619 Atomic orbital electron populations 1.21679 0.92337 1.03104 1.02564 1.22604 0.96804 0.83978 0.99643 1.87929 1.20684 1.26446 1.95259 1.22463 0.81575 0.96897 0.99093 1.21487 0.95909 0.92303 0.91672 0.95043 1.21487 1.01244 0.95327 0.95586 1.21549 1.00492 0.95455 0.97663 1.21578 1.00672 0.98560 0.93880 1.21940 0.96645 0.89461 0.98688 1.62372 1.58696 1.01873 1.01856 1.19071 0.91239 0.92523 0.86721 0.96823 1.21591 0.96480 0.98926 1.00308 1.21915 0.93940 1.33209 1.09421 0.93419 1.25603 1.01886 0.94939 0.95393 1.70025 1.36465 1.35140 1.13570 0.85775 0.81615 0.78357 0.77211 1.20280 1.20890 1.19782 0.89164 0.91499 0.93204 0.95221 0.92433 0.95265 0.92440 0.91387 0.90989 0.89860 0.92953 0.91704 0.90606 0.96939 0.92457 0.95477 0.92737 0.95645 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 10.28 71.98 0.74 -2.65 16 2 C 0.05 1.39 6.66 71.98 0.48 1.87 16 3 O -0.38 -14.34 9.44 -148.98 -1.41 -15.75 16 4 C 0.08 2.98 5.14 71.98 0.37 3.35 16 5 C 0.10 3.76 1.87 44.94 0.08 3.85 16 6 H 0.03 1.37 6.91 -2.38 -0.02 1.35 16 7 C -0.10 -3.09 5.21 30.65 0.16 -2.93 16 8 C -0.11 -3.18 6.00 30.67 0.18 -3.00 16 9 C -0.11 -3.35 6.09 30.64 0.19 -3.17 16 10 C 0.06 2.45 4.79 86.32 0.41 2.86 16 11 N -0.52 -23.00 4.41 -850.40 -3.75 -26.75 16 12 C 0.21 10.89 1.96 44.17 0.09 10.98 16 13 H 0.01 0.80 5.90 -2.39 -0.01 0.79 16 14 C -0.11 -5.84 8.42 71.98 0.61 -5.24 16 15 C -0.55 -29.74 7.18 25.60 0.18 -29.56 16 16 H 0.05 2.62 5.84 -2.91 -0.02 2.60 16 17 C 0.02 1.19 5.30 84.65 0.45 1.64 16 18 N -0.91 -52.61 11.40 21.45 0.24 -52.36 16 19 Si 0.94 43.79 29.54 68.60 2.03 45.82 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.35 6.04 -2.39 -0.01 1.34 16 29 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.07 2.24 7.57 -2.39 -0.02 2.22 16 31 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.01 0.54 6.68 -2.39 -0.02 0.53 16 37 H 0.06 2.38 6.15 -2.39 -0.01 2.37 16 38 H 0.03 1.32 6.65 -2.39 -0.02 1.31 16 39 H 0.05 3.01 6.29 -2.39 -0.02 3.00 16 40 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -60.71 309.05 2.03 -58.68 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.98 Total: 12.36 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 3.94 Total: -22.00 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -3.51 Total: -79.12 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -1.41 Total: -15.75 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -60.71 2.03 -58.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313484585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.868 kcal (2) G-P(sol) polarization free energy of solvation -60.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds