Wall clock time and date at job start Mon Mar 30 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00176 * 2 1 4 4 H 1.09001 * 109.47423 * 336.55179 * 3 2 1 5 5 C 1.53003 * 109.46868 * 96.54939 * 3 2 1 6 6 N 1.46904 * 109.47148 * 299.99422 * 5 3 2 7 7 C 1.46901 * 111.00141 * 179.97438 * 6 5 3 8 8 H 1.08997 * 109.46842 * 325.00624 * 7 6 5 9 9 C 1.52996 * 109.46978 * 85.00361 * 7 6 5 10 10 C 1.50702 * 109.47119 * 205.00599 * 7 6 5 11 11 H 1.07998 * 119.99751 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99481 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00752 * 359.97438 * 12 10 7 14 14 Si 1.86809 * 119.99656 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.46732 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47158 * 119.99635 * 14 12 10 17 17 H 1.48499 * 109.46646 * 240.00161 * 14 12 10 18 18 C 1.52996 * 109.47296 * 216.54601 * 3 2 1 19 19 C 1.54265 * 110.03606 * 173.23547 * 18 3 2 20 20 C 1.54887 * 104.20051 * 217.10691 * 19 18 3 21 21 C 1.54889 * 102.74737 * 37.93987 * 20 19 18 22 22 C 1.53872 * 110.03341 * 56.06987 * 18 3 2 23 23 H 1.09003 * 109.47426 * 182.49943 * 1 2 3 24 24 H 1.09005 * 109.47061 * 302.49393 * 1 2 3 25 25 H 1.09000 * 109.47293 * 62.49386 * 1 2 3 26 26 H 1.08998 * 109.47609 * 60.00080 * 5 3 2 27 27 H 1.09009 * 109.47051 * 179.97438 * 5 3 2 28 28 H 1.00897 * 111.00409 * 303.96310 * 6 5 3 29 29 H 1.08993 * 109.47585 * 179.97438 * 9 7 6 30 30 H 1.09001 * 109.47259 * 300.00354 * 9 7 6 31 31 H 1.09002 * 109.47119 * 59.99696 * 9 7 6 32 32 H 0.96998 * 120.00355 * 180.02562 * 13 12 10 33 33 H 1.08998 * 110.01704 * 294.67822 * 18 3 2 34 34 H 1.09006 * 110.48465 * 335.78902 * 19 18 3 35 35 H 1.09001 * 110.48773 * 98.42677 * 19 18 3 36 36 H 1.08997 * 110.75357 * 279.63109 * 20 19 18 37 37 H 1.08995 * 110.91630 * 156.32591 * 20 19 18 38 38 H 1.08994 * 110.48997 * 203.38045 * 21 20 19 39 39 H 1.09000 * 110.60145 * 80.79062 * 21 20 19 40 40 H 1.09000 * 110.03549 * 238.57392 * 22 18 3 41 41 H 1.09006 * 110.02898 * 0.02562 * 22 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2968 2.0208 -0.4089 5 6 2.3680 1.7043 1.4331 6 7 1.1523 1.7097 2.2579 7 6 1.4581 2.0885 3.6439 8 1 2.4364 1.6956 3.9205 9 6 1.4681 3.6136 3.7653 10 6 0.4093 1.5181 4.5636 11 1 -0.4029 0.9324 4.1590 12 6 0.4868 1.7441 5.9215 13 7 1.4760 2.4568 6.4142 14 14 -0.8137 1.0377 7.0615 15 1 -1.8120 0.2804 6.2645 16 1 -0.1701 0.1279 8.0429 17 1 -1.4929 2.1437 7.7830 18 6 3.2763 1.2999 -0.8589 19 6 3.8207 2.7357 -1.0071 20 6 4.3513 2.7927 -2.4611 21 6 3.3042 1.9584 -3.2400 22 6 2.9480 0.8057 -2.2787 23 1 -0.3634 -1.0267 0.0448 24 1 -0.3633 0.5521 0.8668 25 1 -0.3634 0.4746 -0.9115 26 1 3.0814 0.9889 1.8421 27 1 2.8118 2.6999 1.4331 28 1 0.4501 2.3172 1.8631 29 1 1.6945 3.8948 4.7937 30 1 2.2266 4.0261 3.1001 31 1 0.4897 4.0065 3.4886 32 1 1.5307 2.6155 7.3696 33 1 4.0319 0.6583 -0.4057 34 1 3.0217 3.4633 -0.8637 35 1 4.6300 2.9119 -0.2985 36 1 5.3383 2.3356 -2.5303 37 1 4.3762 3.8194 -2.8263 38 1 3.7366 1.5673 -4.1609 39 1 2.4214 2.5589 -3.4591 40 1 3.5449 -0.0753 -2.5147 41 1 1.8865 0.5701 -2.3558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596047310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:33 Heat of formation + Delta-G solvation = -67.053013 kcal Electronic energy + Delta-G solvation = -18195.965137 eV Core-core repulsion = 15495.950674 eV Total energy + Delta-G solvation = -2700.014463 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.12412 -36.78247 -35.53230 -32.59041 -30.82489 -28.73657 -28.28838 -26.29103 -25.18619 -24.67700 -21.60289 -20.59343 -20.26814 -19.42652 -16.49487 -16.31979 -15.64183 -15.43519 -14.78046 -14.48353 -14.09802 -13.63844 -13.34124 -13.17137 -12.90751 -12.51886 -11.98727 -11.64356 -11.48251 -11.11740 -11.07121 -11.00829 -10.93515 -10.83186 -10.81335 -10.65617 -10.59304 -10.37781 -10.19591 -10.08826 -9.91079 -9.13746 -8.78396 -8.33644 -7.14922 -5.95520 -3.98415 3.33402 3.40995 3.46348 4.12065 4.45766 4.61907 4.64569 4.84848 5.12409 5.36215 5.38115 5.44985 5.48386 5.61346 5.63528 5.69940 5.74135 5.78005 5.83375 5.89415 5.98038 6.07025 6.14833 6.18644 6.27629 6.31752 6.37635 6.45442 6.55826 6.71502 6.85001 7.12344 7.39948 7.70155 7.75573 7.91698 8.31032 8.56242 8.65407 9.08914 9.66842 11.11661 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038510 B = 0.005194 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.918300 B = 5389.180224 C = 5914.873844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.374 6.374 3 C 0.102 3.898 4 H 0.052 0.948 5 C 0.041 3.959 6 N -0.678 5.678 7 C 0.211 3.789 8 H 0.033 0.967 9 C -0.168 4.168 10 C -0.491 4.491 11 H 0.062 0.938 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.090 4.090 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.113 4.113 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.318 0.682 29 H 0.089 0.911 30 H 0.004 0.996 31 H 0.026 0.974 32 H 0.258 0.742 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 0.394 -16.588 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.293 6.293 3 C 0.044 3.956 4 H 0.070 0.930 5 C -0.089 4.089 6 N -0.308 5.308 7 C 0.103 3.897 8 H 0.051 0.949 9 C -0.227 4.227 10 C -0.530 4.530 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.213 1.213 18 C -0.110 4.110 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.164 4.164 22 C -0.150 4.150 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.134 0.866 29 H 0.107 0.893 30 H 0.023 0.977 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.093 -0.408 -16.269 16.566 hybrid contribution -0.665 0.906 0.718 1.334 sum 2.428 0.498 -15.551 15.747 Atomic orbital electron populations 1.22792 0.81301 1.02207 0.99941 1.87813 1.19585 1.26979 1.94906 1.22216 0.93705 0.85085 0.94619 0.93028 1.22458 0.94864 0.98788 0.92820 1.60814 1.08498 1.57478 1.03984 1.19174 0.97221 0.90204 0.83062 0.94933 1.22425 0.96965 1.00236 1.03115 1.21196 1.09843 1.31196 0.90784 0.91968 1.24952 0.95959 0.95496 0.98205 1.69892 1.31284 1.40046 1.12640 0.86466 0.81681 0.78713 0.80677 1.19758 1.21156 1.21275 1.21870 0.96949 0.96809 0.95329 1.22406 1.00466 0.96088 0.96566 1.22486 0.98640 0.99706 0.95346 1.22397 0.98741 0.97233 0.98049 1.22085 1.01736 0.97610 0.93611 0.90754 0.91567 0.95870 0.91191 0.95655 0.86562 0.89286 0.97712 0.95472 0.93188 0.90374 0.91497 0.91372 0.91610 0.91816 0.92064 0.91949 0.91976 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.63 101.05 1.07 1.59 16 2 O -0.37 -6.35 9.50 -35.23 -0.33 -6.68 16 3 C 0.10 1.57 1.73 -26.73 -0.05 1.53 16 4 H 0.05 0.76 7.63 -51.93 -0.40 0.37 16 5 C 0.04 0.75 5.02 -3.82 -0.02 0.74 16 6 N -0.68 -14.50 4.69 -107.95 -0.51 -15.01 16 7 C 0.21 5.38 2.57 -68.86 -0.18 5.20 16 8 H 0.03 0.92 7.80 -51.93 -0.40 0.52 16 9 C -0.17 -4.08 8.94 37.16 0.33 -3.74 16 10 C -0.49 -13.76 8.84 -34.44 -0.30 -14.06 16 11 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 13 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 14 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.09 -1.18 2.70 -89.51 -0.24 -1.42 16 19 C -0.12 -1.36 5.48 -25.07 -0.14 -1.50 16 20 C -0.12 -1.21 6.91 -24.74 -0.17 -1.38 16 21 C -0.13 -1.23 6.83 -25.07 -0.17 -1.40 16 22 C -0.11 -1.30 6.19 -25.61 -0.16 -1.46 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.11 6.39 -51.93 -0.33 0.77 16 25 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 1.40 8.05 -51.93 -0.42 0.99 16 27 H 0.03 0.46 6.77 -51.92 -0.35 0.11 16 28 H 0.32 6.42 8.10 -39.29 -0.32 6.10 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 30 H 0.00 0.09 7.46 -51.93 -0.39 -0.30 16 31 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.81 7.29 -51.93 -0.38 0.43 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -29.02 318.36 -8.03 -37.05 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.48 Total: 3.03 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.12 Total: -14.49 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.12 Total: -40.41 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.33 Total: -6.68 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.02 -8.03 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596047310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.008 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds