Wall clock time and date at job start Mon Mar 30 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46872 * 2 1 4 4 O 1.42896 * 109.47599 * 120.00236 * 2 1 3 5 5 C 1.42895 * 114.00319 * 89.99634 * 4 2 1 6 6 C 1.53116 * 109.52191 * 150.00091 * 5 4 2 7 7 C 1.53043 * 109.27629 * 177.56243 * 6 5 4 8 8 N 1.46845 * 109.52372 * 300.82069 * 7 6 5 9 9 C 1.46898 * 111.00313 * 185.83944 * 8 7 6 10 10 H 1.09003 * 109.47385 * 54.99796 * 9 8 7 11 11 C 1.53007 * 109.47058 * 295.00582 * 9 8 7 12 12 C 1.50694 * 109.47326 * 175.00191 * 9 8 7 13 13 H 1.08002 * 119.99997 * 116.78872 * 12 9 8 14 14 C 1.37870 * 120.00215 * 296.78281 * 12 9 8 15 15 N 1.31509 * 120.00265 * 174.47860 * 14 12 9 16 16 Si 1.86808 * 119.99864 * 354.48403 * 14 12 9 17 17 H 1.48495 * 109.47136 * 84.88839 * 16 14 12 18 18 H 1.48497 * 109.46804 * 204.88899 * 16 14 12 19 19 H 1.48496 * 109.46650 * 324.88790 * 16 14 12 20 20 C 1.46849 * 111.19679 * 61.74431 * 8 7 6 21 21 C 1.53044 * 109.52175 * 298.25655 * 20 8 7 22 22 H 1.08996 * 109.46704 * 299.99711 * 1 2 3 23 23 H 1.09001 * 109.47159 * 59.99659 * 1 2 3 24 24 H 1.08995 * 109.46937 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47325 * 240.00510 * 2 1 3 26 26 H 1.09000 * 109.46772 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46783 * 300.00142 * 3 2 1 28 28 H 1.08996 * 109.47220 * 60.00605 * 3 2 1 29 29 H 1.09002 * 109.57268 * 29.84697 * 5 4 2 30 30 H 1.09001 * 109.50443 * 57.62418 * 6 5 4 31 31 H 1.09000 * 109.50857 * 297.50038 * 6 5 4 32 32 H 1.09005 * 109.46394 * 180.80709 * 7 6 5 33 33 H 1.08999 * 109.46305 * 60.83879 * 7 6 5 34 34 H 1.09000 * 109.47537 * 56.52012 * 11 9 8 35 35 H 1.09001 * 109.47198 * 176.52601 * 11 9 8 36 36 H 1.09002 * 109.46482 * 296.51815 * 11 9 8 37 37 H 0.97005 * 120.00463 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.46458 * 58.27424 * 20 8 7 39 39 H 1.09003 * 109.46445 * 178.24138 * 20 8 7 40 40 H 1.08999 * 109.50317 * 299.23900 * 21 20 8 41 41 H 1.08999 * 109.50022 * 179.11924 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6736 1.1667 5 6 2.2002 -2.0782 0.9886 6 6 3.3305 -2.5588 1.9028 7 6 3.4925 -4.0732 1.7526 8 7 2.2334 -4.7392 2.1094 9 6 2.3922 -6.1996 2.1104 10 1 3.2149 -6.4752 2.7702 11 6 2.6947 -6.6807 0.6898 12 6 1.1198 -6.8429 2.5984 13 1 0.5532 -7.4858 1.9411 14 6 0.6790 -6.6109 3.8840 15 7 -0.4845 -7.0826 4.2754 16 14 1.7344 -5.6262 5.0698 17 1 1.4815 -4.1765 4.8710 18 1 1.3927 -6.0015 6.4653 19 1 3.1681 -5.9180 4.8156 20 6 1.1436 -4.3290 1.2147 21 6 0.9115 -2.8222 1.3489 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6768 1.9564 0.8900 29 1 2.4603 -2.2821 -0.0502 30 1 3.0877 -2.3197 2.9382 31 1 4.2605 -2.0638 1.6229 32 1 4.2871 -4.4207 2.4129 33 1 3.7489 -4.3103 0.7200 34 1 3.5806 -6.1689 0.3138 35 1 2.8734 -7.7559 0.7007 36 1 1.8456 -6.4601 0.0430 37 1 -0.7948 -6.9191 5.1798 38 1 1.4109 -4.5650 0.1848 39 1 0.2320 -4.8623 1.4844 40 1 0.6306 -2.5873 2.3756 41 1 0.1130 -2.5155 0.6733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695086574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:29 Heat of formation + Delta-G solvation = -55.422292 kcal Electronic energy + Delta-G solvation = -18789.885921 eV Core-core repulsion = 16090.375804 eV Total energy + Delta-G solvation = -2699.510117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.25474 -37.50854 -34.01402 -32.34322 -31.37395 -30.33169 -28.33643 -27.22174 -25.49561 -23.14437 -22.52687 -21.28190 -20.16829 -18.75324 -16.82047 -16.61278 -15.50679 -14.93694 -14.59009 -14.31045 -13.88867 -13.63950 -13.23873 -13.04292 -12.84760 -12.46488 -12.32942 -12.28193 -12.17212 -11.66317 -11.45118 -11.26955 -11.22374 -10.89463 -10.60036 -10.55983 -10.44787 -10.21553 -9.99797 -9.81206 -9.54837 -9.18486 -9.00293 -8.46096 -7.19004 -5.99663 -4.05744 3.55114 3.59512 3.70703 3.77686 4.64731 4.80701 4.86881 5.00701 5.15314 5.16356 5.28861 5.46973 5.50825 5.52054 5.56290 5.71675 5.73633 5.78892 5.88760 6.03567 6.06957 6.09790 6.15961 6.20847 6.26876 6.32396 6.34536 6.41440 6.53801 6.57416 6.75971 6.89073 7.00394 7.26322 7.51500 7.69330 8.07995 8.29609 8.62082 9.00932 9.66167 11.10221 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.007004 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.378517 B = 3996.519748 C = 4147.276991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 C -0.148 4.148 4 O -0.378 6.378 5 C 0.094 3.906 6 C -0.111 4.111 7 C 0.050 3.950 8 N -0.532 5.532 9 C 0.170 3.830 10 H 0.043 0.957 11 C -0.164 4.164 12 C -0.515 4.515 13 H 0.070 0.930 14 C 0.087 3.913 15 N -0.900 5.900 16 Si 0.912 3.088 17 H -0.268 1.268 18 H -0.311 1.311 19 H -0.276 1.276 20 C 0.070 3.930 21 C -0.140 4.140 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.029 0.971 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.263 0.737 38 H 0.019 0.981 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 13.024 -8.774 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.023 3.977 3 C -0.206 4.206 4 O -0.298 6.298 5 C 0.036 3.964 6 C -0.149 4.149 7 C -0.078 4.078 8 N -0.258 5.258 9 C 0.065 3.935 10 H 0.061 0.939 11 C -0.223 4.223 12 C -0.553 4.553 13 H 0.088 0.912 14 C -0.118 4.118 15 N -0.537 5.537 16 Si 0.742 3.258 17 H -0.193 1.193 18 H -0.240 1.240 19 H -0.201 1.201 20 C -0.058 4.058 21 C -0.178 4.178 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.256 13.245 -7.988 16.336 hybrid contribution 0.547 0.139 -0.389 0.685 sum 5.803 13.383 -8.377 16.821 Atomic orbital electron populations 1.22475 0.96192 1.02971 1.02074 1.22091 0.93720 0.93544 0.88331 1.21862 1.01550 0.94978 1.02186 1.87933 1.86106 1.20590 1.35165 1.22280 0.95912 0.80033 0.98138 1.21659 0.96729 0.95666 1.00871 1.22034 0.94502 0.92824 0.98465 1.62570 1.02888 1.09679 1.50660 1.19834 0.98521 0.82956 0.92214 0.93874 1.22286 0.99024 1.00680 1.00279 1.20844 1.07089 1.28838 0.98529 0.91155 1.24970 0.94439 0.94012 0.98331 1.69961 1.19194 1.45792 1.18740 0.86244 0.80662 0.81540 0.77331 1.19307 1.23973 1.20125 1.21808 0.97580 0.93067 0.93335 1.22292 0.96511 0.96193 1.02803 0.91884 0.92234 0.91635 0.92652 0.92243 0.91644 0.91907 0.93052 0.90672 0.92058 0.91329 0.95564 0.95199 0.93150 0.93372 0.92782 0.96298 0.88575 0.90671 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.33 37.16 0.35 -1.70 16 2 C 0.08 0.98 3.34 -26.73 -0.09 0.89 16 3 C -0.15 -1.48 9.56 37.16 0.36 -1.13 16 4 O -0.38 -5.83 9.66 -35.23 -0.34 -6.17 16 5 C 0.09 1.49 2.68 -26.61 -0.07 1.41 16 6 C -0.11 -1.83 5.75 -26.65 -0.15 -1.98 16 7 C 0.05 0.90 5.03 -3.83 -0.02 0.88 16 8 N -0.53 -11.40 2.82 -228.07 -0.64 -12.05 16 9 C 0.17 3.94 1.70 -68.87 -0.12 3.82 16 10 H 0.04 1.04 6.81 -51.93 -0.35 0.69 16 11 C -0.16 -3.27 8.42 37.16 0.31 -2.96 16 12 C -0.51 -14.17 7.70 -34.45 -0.27 -14.43 16 13 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 14 C 0.09 2.49 5.46 -17.82 -0.10 2.39 16 15 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 16 Si 0.91 23.40 26.33 -169.99 -4.48 18.92 16 17 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 19 H -0.28 -6.88 6.56 56.52 0.37 -6.51 16 20 C 0.07 1.40 4.68 -3.83 -0.02 1.39 16 21 C -0.14 -2.46 5.47 -26.65 -0.15 -2.61 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.80 5.55 -51.93 -0.29 0.52 16 25 H 0.06 0.63 7.37 -51.93 -0.38 0.25 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.76 7.37 -51.93 -0.38 0.38 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 33 H 0.03 0.44 6.65 -51.93 -0.35 0.10 16 34 H 0.03 0.52 6.49 -51.93 -0.34 0.19 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.96 6.72 -51.93 -0.35 0.61 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.02 0.36 6.70 -51.93 -0.35 0.01 16 39 H 0.10 2.23 6.92 -51.93 -0.36 1.87 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.06 0.96 5.61 -51.93 -0.29 0.67 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -29.76 306.49 -7.27 -37.04 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.25 Total: -1.69 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 0.04 Total: -14.01 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.13 Total: -38.70 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.34 Total: -6.17 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.48 Total: 18.92 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.76 -7.27 -37.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695086574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.387 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds