Wall clock time and date at job start Mon Mar 30 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46872 * 2 1 4 4 O 1.42896 * 109.47599 * 120.00236 * 2 1 3 5 5 C 1.42895 * 114.00319 * 89.99634 * 4 2 1 6 6 C 1.53116 * 109.52191 * 150.00091 * 5 4 2 7 7 C 1.53043 * 109.27629 * 177.56243 * 6 5 4 8 8 N 1.46845 * 109.52372 * 300.82069 * 7 6 5 9 9 C 1.46898 * 111.00313 * 185.83944 * 8 7 6 10 10 H 1.09003 * 109.47385 * 54.99796 * 9 8 7 11 11 C 1.53007 * 109.47058 * 295.00582 * 9 8 7 12 12 C 1.50694 * 109.47326 * 175.00191 * 9 8 7 13 13 H 1.08002 * 119.99997 * 116.78872 * 12 9 8 14 14 C 1.37870 * 120.00215 * 296.78281 * 12 9 8 15 15 N 1.31509 * 120.00265 * 174.47860 * 14 12 9 16 16 Si 1.86808 * 119.99864 * 354.48403 * 14 12 9 17 17 H 1.48495 * 109.47136 * 84.88839 * 16 14 12 18 18 H 1.48497 * 109.46804 * 204.88899 * 16 14 12 19 19 H 1.48496 * 109.46650 * 324.88790 * 16 14 12 20 20 C 1.46849 * 111.19679 * 61.74431 * 8 7 6 21 21 C 1.53044 * 109.52175 * 298.25655 * 20 8 7 22 22 H 1.08996 * 109.46704 * 299.99711 * 1 2 3 23 23 H 1.09001 * 109.47159 * 59.99659 * 1 2 3 24 24 H 1.08995 * 109.46937 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47325 * 240.00510 * 2 1 3 26 26 H 1.09000 * 109.46772 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46783 * 300.00142 * 3 2 1 28 28 H 1.08996 * 109.47220 * 60.00605 * 3 2 1 29 29 H 1.09002 * 109.57268 * 29.84697 * 5 4 2 30 30 H 1.09001 * 109.50443 * 57.62418 * 6 5 4 31 31 H 1.09000 * 109.50857 * 297.50038 * 6 5 4 32 32 H 1.09005 * 109.46394 * 180.80709 * 7 6 5 33 33 H 1.08999 * 109.46305 * 60.83879 * 7 6 5 34 34 H 1.09000 * 109.47537 * 56.52012 * 11 9 8 35 35 H 1.09001 * 109.47198 * 176.52601 * 11 9 8 36 36 H 1.09002 * 109.46482 * 296.51815 * 11 9 8 37 37 H 0.97005 * 120.00463 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.46458 * 58.27424 * 20 8 7 39 39 H 1.09003 * 109.46445 * 178.24138 * 20 8 7 40 40 H 1.08999 * 109.50317 * 299.23900 * 21 20 8 41 41 H 1.08999 * 109.50022 * 179.11924 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6736 1.1667 5 6 2.2002 -2.0782 0.9886 6 6 3.3305 -2.5588 1.9028 7 6 3.4925 -4.0732 1.7526 8 7 2.2334 -4.7392 2.1094 9 6 2.3922 -6.1996 2.1104 10 1 3.2149 -6.4752 2.7702 11 6 2.6947 -6.6807 0.6898 12 6 1.1198 -6.8429 2.5984 13 1 0.5532 -7.4858 1.9411 14 6 0.6790 -6.6109 3.8840 15 7 -0.4845 -7.0826 4.2754 16 14 1.7344 -5.6262 5.0698 17 1 1.4815 -4.1765 4.8710 18 1 1.3927 -6.0015 6.4653 19 1 3.1681 -5.9180 4.8156 20 6 1.1436 -4.3290 1.2147 21 6 0.9115 -2.8222 1.3489 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6768 1.9564 0.8900 29 1 2.4603 -2.2821 -0.0502 30 1 3.0877 -2.3197 2.9382 31 1 4.2605 -2.0638 1.6229 32 1 4.2871 -4.4207 2.4129 33 1 3.7489 -4.3103 0.7200 34 1 3.5806 -6.1689 0.3138 35 1 2.8734 -7.7559 0.7007 36 1 1.8456 -6.4601 0.0430 37 1 -0.7948 -6.9191 5.1798 38 1 1.4109 -4.5650 0.1848 39 1 0.2320 -4.8623 1.4844 40 1 0.6306 -2.5873 2.3756 41 1 0.1130 -2.5155 0.6733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695086574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:29 Heat of formation + Delta-G solvation = -74.082146 kcal Electronic energy + Delta-G solvation = -18790.695073 eV Core-core repulsion = 16090.375804 eV Total energy + Delta-G solvation = -2700.319269 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60638 -38.86227 -35.54123 -34.03543 -32.85258 -31.77312 -29.89536 -28.06448 -27.47199 -24.67482 -23.96510 -22.22972 -21.81816 -20.31706 -18.84471 -17.81666 -16.84652 -16.40028 -16.15396 -15.77776 -15.31938 -15.22633 -14.75597 -14.47688 -14.29259 -13.97508 -13.71060 -13.36955 -13.09111 -13.03349 -12.89407 -12.68679 -12.68262 -12.56478 -12.21570 -11.98401 -11.85255 -11.71032 -11.61890 -11.44460 -11.14055 -11.01399 -10.69087 -10.35948 -8.83441 -8.23073 -6.31019 1.44897 1.53877 1.61801 2.50680 2.70918 3.01248 3.49097 3.87473 3.91705 4.02272 4.14591 4.20272 4.31089 4.32667 4.44627 4.46875 4.55136 4.60213 4.71344 4.72785 4.76687 4.80544 4.90425 4.93767 5.00423 5.02862 5.05797 5.12591 5.21750 5.30855 5.32280 5.41025 5.42429 5.51037 5.67986 6.14157 6.42783 6.51415 6.67242 6.86564 7.43620 8.90070 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.007004 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.378517 B = 3996.519748 C = 4147.276991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 C -0.145 4.145 4 O -0.394 6.394 5 C 0.101 3.899 6 C -0.108 4.108 7 C 0.051 3.949 8 N -0.553 5.553 9 C 0.171 3.829 10 H 0.039 0.961 11 C -0.155 4.155 12 C -0.508 4.508 13 H 0.033 0.967 14 C 0.036 3.964 15 N -0.947 5.947 16 Si 0.969 3.031 17 H -0.271 1.271 18 H -0.315 1.315 19 H -0.259 1.259 20 C 0.077 3.923 21 C -0.133 4.133 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.036 0.964 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 15.024 -10.400 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.014 3.986 3 C -0.202 4.202 4 O -0.314 6.314 5 C 0.044 3.956 6 C -0.146 4.146 7 C -0.077 4.077 8 N -0.279 5.279 9 C 0.065 3.935 10 H 0.057 0.943 11 C -0.214 4.214 12 C -0.547 4.547 13 H 0.051 0.949 14 C -0.163 4.163 15 N -0.587 5.587 16 Si 0.798 3.202 17 H -0.197 1.197 18 H -0.244 1.244 19 H -0.184 1.184 20 C -0.051 4.051 21 C -0.171 4.171 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.449 15.255 -9.633 19.519 hybrid contribution -0.175 -0.472 0.020 0.503 sum 7.275 14.783 -9.613 19.076 Atomic orbital electron populations 1.22464 0.95972 1.02312 1.02853 1.22392 0.94012 0.94552 0.87674 1.21859 1.01682 0.93607 1.03023 1.87927 1.86302 1.20059 1.37134 1.22135 0.94221 0.80352 0.98930 1.21626 0.98341 0.94748 0.99839 1.22114 0.92472 0.93431 0.99713 1.62270 1.05048 1.08537 1.52051 1.19664 0.95661 0.84178 0.93959 0.94307 1.22155 1.00161 1.00986 0.98063 1.21099 1.08093 1.27765 0.97717 0.94883 1.25679 0.95297 0.95225 1.00103 1.70082 1.21165 1.48304 1.19175 0.85332 0.79989 0.79767 0.75138 1.19695 1.24442 1.18367 1.21666 0.95436 0.94186 0.93780 1.22220 0.98617 0.94750 1.01517 0.92785 0.89837 0.92935 0.91372 0.92031 0.89290 0.92618 0.91008 0.92863 0.89147 0.90896 0.93447 0.92031 0.93174 0.93826 0.92902 0.94600 0.92886 0.93623 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.66 9.33 71.98 0.67 -2.99 16 2 C 0.07 1.50 3.34 30.60 0.10 1.61 16 3 C -0.14 -2.43 9.56 71.98 0.69 -1.74 16 4 O -0.39 -11.17 9.66 -148.98 -1.44 -12.61 16 5 C 0.10 2.92 2.68 30.67 0.08 3.00 16 6 C -0.11 -3.20 5.75 30.65 0.18 -3.03 16 7 C 0.05 1.65 5.03 86.33 0.43 2.08 16 8 N -0.55 -22.94 2.82 -875.48 -2.47 -25.41 16 9 C 0.17 7.79 1.70 44.17 0.08 7.87 16 10 H 0.04 1.81 6.81 -2.39 -0.02 1.80 16 11 C -0.15 -5.86 8.42 71.98 0.61 -5.26 16 12 C -0.51 -28.64 7.70 25.60 0.20 -28.44 16 13 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 14 C 0.04 2.12 5.46 84.65 0.46 2.58 16 15 N -0.95 -59.93 13.96 21.44 0.30 -59.63 16 16 Si 0.97 48.98 26.33 68.60 1.81 50.78 16 17 H -0.27 -13.76 7.11 99.48 0.71 -13.05 16 18 H -0.32 -16.03 7.11 99.48 0.71 -15.32 16 19 H -0.26 -12.27 6.56 99.48 0.65 -11.61 16 20 C 0.08 3.05 4.68 86.33 0.40 3.46 16 21 C -0.13 -4.56 5.47 30.65 0.17 -4.39 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.20 5.55 -2.39 -0.01 1.18 16 25 H 0.07 1.29 7.37 -2.39 -0.02 1.27 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.81 7.37 -2.39 -0.02 1.79 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.07 2.33 8.08 -2.38 -0.02 2.31 16 33 H 0.05 1.37 6.65 -2.39 -0.02 1.35 16 34 H 0.06 1.94 6.49 -2.39 -0.02 1.92 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.67 6.72 -2.39 -0.02 1.65 16 37 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 38 H 0.04 1.29 6.70 -2.39 -0.02 1.27 16 39 H 0.05 2.53 6.92 -2.39 -0.02 2.51 16 40 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 2.36 5.61 -2.39 -0.01 2.35 16 Total: -1.00 -65.75 306.49 3.18 -62.56 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.92 Total: 9.56 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.07 Total: -25.26 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.17 Total: -85.04 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.44 Total: -12.61 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 1.81 Total: 50.78 kcal Total: -65.75 3.18 -62.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695086574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.518 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds