Wall clock time and date at job start Mon Mar 30 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38363 * 119.91980 * 2 1 4 4 C 1.38446 * 120.38780 * 180.02562 * 3 2 1 5 5 C 1.38000 * 120.21454 * 359.74481 * 4 3 2 6 6 Cl 1.73594 * 120.08514 * 180.27587 * 5 4 3 7 7 C 1.39931 * 119.82703 * 0.51219 * 5 4 3 8 8 C 1.47625 * 120.18686 * 179.76879 * 7 5 4 9 9 O 1.21787 * 120.00011 * 172.51882 * 8 7 5 10 10 C 1.46107 * 119.99746 * 352.23894 * 8 7 5 11 11 H 1.07999 * 120.00175 * 314.79752 * 10 8 7 12 12 C 1.40324 * 119.99835 * 134.79936 * 10 8 7 13 13 N 1.30546 * 120.00146 * 178.91523 * 12 10 8 14 14 Si 1.86803 * 120.00040 * 358.92057 * 12 10 8 15 15 H 1.48499 * 109.47417 * 88.98654 * 14 12 10 16 16 H 1.48493 * 109.47180 * 208.99054 * 14 12 10 17 17 H 1.48501 * 109.46678 * 328.98765 * 14 12 10 18 18 C 1.38176 * 119.91733 * 180.02562 * 2 1 3 19 19 F 1.35095 * 120.10789 * 359.97438 * 18 2 1 20 20 H 1.08999 * 109.46688 * 269.97243 * 1 2 3 21 21 H 1.08994 * 109.46980 * 29.97367 * 1 2 3 22 22 H 1.08999 * 109.47029 * 149.97212 * 1 2 3 23 23 H 1.08004 * 119.80846 * 0.02562 * 3 2 1 24 24 H 1.08001 * 119.89331 * 180.02562 * 4 3 2 25 25 H 0.96995 * 119.99745 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1992 0.0000 4 6 3.5816 1.2105 -0.0005 5 6 4.2857 0.0237 0.0042 6 17 6.0216 0.0418 0.0108 7 6 3.5969 -1.1943 -0.0012 8 6 4.3423 -2.4686 -0.0013 9 8 3.7466 -3.5225 0.1313 10 6 5.7940 -2.4657 -0.1666 11 1 6.2495 -1.8508 -0.9287 12 6 6.5963 -3.2620 0.6648 13 7 7.8917 -3.2757 0.5033 14 14 5.8109 -4.3025 2.0027 15 1 5.4570 -5.6346 1.4501 16 1 6.7685 -4.4707 3.1251 17 1 4.5828 -3.6292 2.4964 18 6 2.1962 -1.1976 -0.0005 19 9 1.5212 -2.3679 -0.0005 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8897 -0.5143 23 1 1.6527 2.1320 0.0004 24 1 4.1122 2.1512 -0.0001 25 1 8.4462 -3.8264 1.0777 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075903708.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:22 Heat of formation + Delta-G solvation = -66.774159 kcal Electronic energy + Delta-G solvation = -15068.048140 eV Core-core repulsion = 12180.076684 eV Total energy + Delta-G solvation = -2887.971457 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.29018 -38.89176 -36.86186 -35.75602 -32.90606 -32.30073 -30.38125 -27.32026 -26.31932 -23.27362 -21.39631 -19.63806 -17.24553 -17.04484 -16.06145 -15.55632 -15.22048 -14.68167 -14.15323 -13.53834 -13.28417 -13.12749 -12.86180 -12.64084 -12.44656 -12.13519 -11.92945 -11.49398 -11.33785 -10.98837 -10.86414 -10.43689 -10.02554 -9.33359 -8.78283 -8.36526 -8.11927 -7.90258 -6.68421 -4.64551 1.18219 1.40658 2.81935 3.24497 3.30963 3.45604 3.54188 4.21935 4.25428 4.62363 4.91009 5.01077 5.18165 5.28700 5.43776 5.64771 5.65992 5.83282 6.07124 6.25029 6.28801 6.48524 6.52141 7.10148 7.39047 7.96650 8.41942 8.82133 9.52445 10.32221 Molecular weight = 242.03amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.011202 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.992172 B = 2498.992792 C = 3313.930395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.143 4.143 3 C -0.083 4.083 4 C -0.140 4.140 5 C 0.018 3.982 6 Cl -0.014 7.014 7 C -0.147 4.147 8 C 0.397 3.603 9 O -0.541 6.541 10 C -0.504 4.504 11 H 0.112 0.888 12 C 0.102 3.898 13 N -0.818 5.818 14 Si 0.915 3.085 15 H -0.267 1.267 16 H -0.298 1.298 17 H -0.262 1.262 18 C 0.139 3.861 19 F -0.117 7.117 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 10.077 0.278 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.144 4.144 3 C -0.102 4.102 4 C -0.159 4.159 5 C -0.010 4.010 6 Cl 0.016 6.984 7 C -0.150 4.150 8 C 0.292 3.708 9 O -0.432 6.432 10 C -0.536 4.536 11 H 0.130 0.870 12 C -0.115 4.115 13 N -0.449 5.449 14 Si 0.743 3.257 15 H -0.192 1.192 16 H -0.226 1.226 17 H -0.186 1.186 18 C 0.119 3.881 19 F -0.095 7.095 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.151 0.849 24 H 0.153 0.847 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.989 9.487 0.364 12.408 hybrid contribution -0.127 -0.494 0.614 0.799 sum -8.117 8.993 0.978 12.153 Atomic orbital electron populations 1.20657 0.90260 1.03001 1.02501 1.19887 0.96935 0.91910 1.05690 1.20796 0.93271 0.96775 0.99325 1.21030 0.93994 0.97007 1.03850 1.20980 0.87431 0.92915 0.99690 1.98437 1.06024 1.98316 1.95633 1.21456 0.91919 0.98363 1.03290 1.19697 0.89867 0.84656 0.76564 1.90398 1.71478 1.32940 1.48362 1.21726 0.89490 1.24040 1.18366 0.86991 1.25591 0.94406 0.93474 0.98025 1.69453 1.05095 1.34015 1.36331 0.86101 0.78636 0.81756 0.79187 1.19244 1.22580 1.18625 1.17656 0.88990 0.81175 1.00319 1.91523 1.79261 1.45724 1.92980 0.91129 0.91224 0.91298 0.84855 0.84748 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.83 36.01 0.35 -0.96 15 2 C -0.14 -2.28 5.88 -104.60 -0.62 -2.89 15 3 C -0.08 -1.14 9.69 -39.46 -0.38 -1.53 15 4 C -0.14 -2.14 9.81 -39.59 -0.39 -2.53 15 5 C 0.02 0.35 6.34 -39.03 -0.25 0.10 15 6 Cl -0.01 -0.29 23.86 -51.86 -1.24 -1.52 15 7 C -0.15 -3.37 5.89 -104.74 -0.62 -3.99 15 8 C 0.40 10.75 5.93 -32.60 -0.19 10.56 15 9 O -0.54 -15.91 13.28 5.11 0.07 -15.84 15 10 C -0.50 -13.82 7.02 -35.64 -0.25 -14.07 15 11 H 0.11 3.07 6.05 -52.49 -0.32 2.75 15 12 C 0.10 2.81 5.52 -17.31 -0.10 2.71 15 13 N -0.82 -22.30 13.91 55.57 0.77 -21.53 15 14 Si 0.92 23.51 26.39 -169.99 -4.49 19.03 15 15 H -0.27 -7.01 7.11 56.52 0.40 -6.61 15 16 H -0.30 -7.15 7.11 56.52 0.40 -6.75 15 17 H -0.26 -7.04 6.90 56.52 0.39 -6.65 15 18 C 0.14 2.87 7.22 -38.91 -0.28 2.59 15 19 F -0.12 -2.60 14.79 2.25 0.03 -2.57 15 20 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.07 0.66 8.08 -51.93 -0.42 0.24 15 22 H 0.07 0.87 7.63 -51.93 -0.40 0.47 15 23 H 0.13 1.31 8.06 -52.48 -0.42 0.89 15 24 H 0.13 1.65 8.06 -52.49 -0.42 1.23 15 25 H 0.28 7.11 8.29 -40.82 -0.34 6.77 15 LS Contribution 240.81 15.07 3.63 3.63 Total: -1.00 -30.64 240.81 -5.48 -36.12 By element: Atomic # 1 Polarization: -5.75 SS G_CDS: -1.55 Total: -7.30 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -2.72 Total: -10.01 kcal Atomic # 7 Polarization: -22.30 SS G_CDS: 0.77 Total: -21.53 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.07 Total: -15.84 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.03 Total: -2.57 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.49 Total: 19.03 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.24 Total: -1.52 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.64 -5.48 -36.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075903708.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.654 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds