Wall clock time and date at job start Mon Mar 30 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 C 1.50707 * 109.47062 * 240.00027 * 2 1 3 5 5 H 1.08000 * 120.00029 * 239.76195 * 4 2 1 6 6 C 1.37872 * 119.99891 * 59.76435 * 4 2 1 7 7 N 1.31524 * 120.00067 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00061 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47176 * 59.99684 * 8 6 4 10 10 H 1.48506 * 109.47406 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46787 * 299.99724 * 8 6 4 12 12 C 1.50701 * 109.46949 * 120.00254 * 2 1 3 13 13 C 1.38234 * 120.00605 * 244.88799 * 12 2 1 14 14 C 1.38218 * 120.05020 * 180.25344 * 13 12 2 15 15 C 1.38258 * 120.05852 * 359.45097 * 14 13 12 16 16 C 1.38273 * 120.01602 * 0.25554 * 15 14 13 17 17 Cl 1.73599 * 120.02948 * 180.02562 * 16 15 14 18 18 C 1.38405 * 120.00472 * 64.57317 * 12 2 1 19 19 F 1.35093 * 120.03017 * 0.04223 * 18 12 2 20 20 H 1.08991 * 109.47009 * 300.00096 * 1 2 3 21 21 H 1.09000 * 109.46833 * 59.99900 * 1 2 3 22 22 H 1.09004 * 109.46902 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47386 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.47539 * 300.00229 * 3 2 1 25 25 H 1.09005 * 109.47287 * 60.00010 * 3 2 1 26 26 H 0.97001 * 119.99720 * 180.02562 * 7 6 4 27 27 H 1.08004 * 119.97629 * 0.02562 * 13 12 2 28 28 H 1.08002 * 119.97183 * 179.72931 * 14 13 12 29 29 H 1.08002 * 119.99200 * 180.27582 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6564 -1.5863 -1.1315 6 6 1.6953 -0.2422 -2.4827 7 7 0.9349 0.8241 -2.6034 8 14 2.3185 -1.1223 -4.0080 9 1 1.8288 -2.5242 -4.0053 10 1 1.8192 -0.4253 -5.2205 11 1 3.8034 -1.1167 -4.0106 12 6 2.0323 -0.7105 1.2305 13 6 2.7417 -0.0130 2.1903 14 6 3.2073 -0.6649 3.3166 15 6 2.9546 -2.0130 3.4907 16 6 2.2401 -2.7118 2.5352 17 17 1.9220 -4.4044 2.7538 18 6 1.7778 -2.0600 1.4028 19 9 1.0799 -2.7411 0.4680 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 0.6974 1.1533 -3.4844 27 1 2.9354 1.0412 2.0582 28 1 3.7652 -0.1197 4.0636 29 1 3.3152 -2.5203 4.3734 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260132605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:59 Heat of formation + Delta-G solvation = -34.279951 kcal Electronic energy + Delta-G solvation = -15607.240139 eV Core-core repulsion = 12856.510832 eV Total energy + Delta-G solvation = -2750.729307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.05091 -38.85294 -36.40275 -35.20233 -31.68534 -29.94616 -28.77250 -25.92877 -25.22519 -22.71049 -21.83336 -19.20986 -17.13910 -16.40809 -15.74271 -15.29353 -14.81502 -14.63227 -14.01154 -13.36598 -12.93181 -12.53806 -12.38083 -12.10541 -11.70912 -11.30991 -11.13297 -10.93624 -10.89096 -10.78229 -10.67952 -10.45654 -10.20029 -9.70403 -9.47891 -8.99462 -8.37320 -8.24493 -7.95638 -6.01017 -4.10381 1.49747 1.69229 2.38365 3.32047 3.35681 3.40454 4.01306 4.42407 4.73891 5.18399 5.26837 5.41946 5.57892 5.73998 6.10794 6.38823 6.41621 6.63789 6.65625 6.70402 6.87187 6.89740 7.06484 7.27042 7.33854 7.52823 7.71065 7.97608 8.09837 8.35247 8.86928 9.54480 11.00466 Molecular weight = 242.06amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.009213 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.336855 B = 3038.462234 C = 3610.458596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.098 3.902 3 C -0.133 4.133 4 C -0.499 4.499 5 H 0.055 0.945 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.054 4.054 13 C -0.103 4.103 14 C -0.127 4.127 15 C -0.113 4.113 16 C -0.081 4.081 17 Cl -0.074 7.074 18 C 0.119 3.881 19 F -0.114 7.114 20 H 0.009 0.991 21 H 0.091 0.909 22 H 0.034 0.966 23 H 0.030 0.970 24 H 0.089 0.911 25 H 0.014 0.986 26 H 0.261 0.739 27 H 0.137 0.863 28 H 0.127 0.873 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -2.566 9.880 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.098 3.902 3 C -0.190 4.190 4 C -0.537 4.537 5 H 0.073 0.927 6 C -0.133 4.133 7 N -0.526 5.526 8 Si 0.720 3.280 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.055 4.055 13 C -0.121 4.121 14 C -0.145 4.145 15 C -0.132 4.132 16 C -0.108 4.108 17 Cl -0.045 7.045 18 C 0.099 3.901 19 F -0.092 7.092 20 H 0.028 0.972 21 H 0.110 0.890 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.108 0.892 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.145 0.855 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.406 -2.634 9.704 10.339 hybrid contribution 0.250 -0.844 -0.933 1.283 sum 2.656 -3.478 8.771 9.802 Atomic orbital electron populations 1.21852 0.96497 0.99974 1.00641 1.17263 0.92919 0.92190 0.87835 1.21902 0.98584 0.97735 1.00778 1.20929 1.31256 1.12022 0.89481 0.92669 1.24840 0.94835 0.94904 0.98729 1.69788 1.36439 1.22927 1.23402 0.86637 0.79186 0.79984 0.82165 1.20162 1.21236 1.20307 1.20871 0.95399 0.91269 0.97949 1.21292 0.97085 1.00969 0.92748 1.21050 1.01245 0.93701 0.98503 1.20684 0.99672 0.94502 0.98340 1.21027 1.06314 0.85714 0.97758 1.98333 1.94774 1.14356 1.97044 1.17337 0.96145 0.90334 0.86304 1.91536 1.75579 1.79014 1.63109 0.97172 0.89040 0.94734 0.95046 0.89217 0.96714 0.92877 0.84484 0.85472 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.08 37.16 0.30 -2.85 15 2 C 0.10 2.34 0.49 -156.81 -0.08 2.26 15 3 C -0.13 -2.97 6.92 37.15 0.26 -2.72 15 4 C -0.50 -13.27 6.88 -34.44 -0.24 -13.51 15 5 H 0.06 1.52 7.28 -52.49 -0.38 1.13 15 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 15 7 N -0.89 -23.83 9.35 55.43 0.52 -23.31 15 8 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 12 C -0.05 -1.14 4.73 -104.56 -0.49 -1.63 15 13 C -0.10 -1.81 8.99 -39.59 -0.36 -2.16 15 14 C -0.13 -1.86 10.04 -39.58 -0.40 -2.25 15 15 C -0.11 -1.70 9.83 -39.56 -0.39 -2.09 15 16 C -0.08 -1.44 6.33 -39.44 -0.25 -1.69 15 17 Cl -0.07 -1.19 28.62 -51.86 -1.48 -2.68 15 18 C 0.12 2.49 6.60 -39.39 -0.26 2.23 15 19 F -0.11 -2.63 13.92 2.25 0.03 -2.60 15 20 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 21 H 0.09 2.36 6.05 -51.93 -0.31 2.05 15 22 H 0.03 0.83 6.68 -51.93 -0.35 0.48 15 23 H 0.03 0.67 7.74 -51.93 -0.40 0.27 15 24 H 0.09 2.22 6.09 -51.93 -0.32 1.91 15 25 H 0.01 0.28 7.28 -51.93 -0.38 -0.10 15 26 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 27 H 0.14 2.23 5.90 -52.48 -0.31 1.92 15 28 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 29 H 0.13 1.57 8.06 -52.49 -0.42 1.14 15 LS Contribution 256.37 15.07 3.86 3.86 Total: -1.00 -26.99 256.37 -6.94 -33.93 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -2.85 Total: -2.66 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -1.99 Total: -22.69 kcal Atomic # 7 Polarization: -23.83 SS G_CDS: 0.52 Total: -23.31 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.03 Total: -2.60 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.48 Total: -2.68 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.99 -6.94 -33.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.352 kcal (2) G-P(sol) polarization free energy of solvation -26.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds