Wall clock time and date at job start Mon Mar 30 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38209 * 120.00372 * 2 1 4 4 C 1.38334 * 120.00879 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 119.98504 * 179.97438 * 4 3 2 6 6 C 1.38370 * 120.02925 * 359.97438 * 4 3 2 7 7 C 1.50698 * 119.99879 * 180.02562 * 6 4 3 8 8 C 1.38166 * 120.00919 * 0.03959 * 6 4 3 9 9 C 1.50698 * 120.00771 * 180.02562 * 8 6 4 10 10 C 1.50698 * 109.47024 * 90.00236 * 9 8 6 11 11 H 1.07997 * 120.00399 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00077 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99805 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99910 * 179.97438 * 12 10 9 15 15 H 1.48510 * 109.46868 * 90.00274 * 14 12 10 16 16 H 1.48500 * 109.47463 * 209.99844 * 14 12 10 17 17 H 1.48498 * 109.47786 * 330.00233 * 14 12 10 18 18 C 1.38431 * 120.00574 * 179.72291 * 2 1 3 19 19 F 1.35096 * 120.01353 * 359.97438 * 18 2 1 20 20 H 1.09002 * 109.47152 * 90.00055 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00155 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00136 * 1 2 3 23 23 H 1.07994 * 119.99826 * 359.97438 * 3 2 1 24 24 H 1.09001 * 109.46777 * 89.99568 * 7 6 4 25 25 H 1.08994 * 109.47138 * 209.99928 * 7 6 4 26 26 H 1.08998 * 109.47157 * 330.00232 * 7 6 4 27 27 H 1.08993 * 109.47532 * 210.00276 * 9 8 6 28 28 H 1.09003 * 109.47389 * 330.00522 * 9 8 6 29 29 H 0.97003 * 119.99542 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5815 1.1970 -0.0005 5 17 4.4490 2.7007 -0.0012 6 6 4.2741 -0.0009 -0.0005 7 6 5.7810 0.0000 -0.0005 8 6 3.5841 -1.1980 -0.0008 9 6 4.3384 -2.5026 -0.0002 10 6 4.5890 -2.9373 1.4208 11 1 4.2375 -2.3295 2.2414 12 6 5.2678 -4.1106 1.6733 13 7 5.6971 -4.8501 0.6740 14 14 5.5789 -4.6491 3.4347 15 1 4.4495 -5.4931 3.9011 16 1 6.8400 -5.4308 3.4980 17 1 5.6946 -3.4517 4.3054 18 6 2.1993 -1.1988 0.0058 19 9 1.5242 -2.3689 0.0120 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.6582 2.1321 -0.0004 24 1 6.1443 0.0003 1.0272 25 1 6.1449 -0.8897 -0.5143 26 1 6.1438 0.8902 -0.5143 27 1 3.7503 -3.2627 -0.5143 28 1 5.2912 -2.3717 -0.5134 29 1 6.1744 -5.6757 0.8517 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207275.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:06 Heat of formation + Delta-G solvation = -66.431338 kcal Electronic energy + Delta-G solvation = -15131.314318 eV Core-core repulsion = 12379.190822 eV Total energy + Delta-G solvation = -2752.123496 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.80474 -40.51806 -37.45901 -36.00212 -34.50440 -32.34001 -30.31603 -29.15172 -25.96654 -25.39298 -22.79682 -21.43658 -18.59497 -18.07181 -17.89073 -16.93106 -16.63356 -16.34649 -14.97595 -14.89715 -14.60063 -14.34747 -14.18212 -13.96422 -13.87301 -13.33743 -13.14110 -12.98045 -12.82098 -12.72349 -12.51854 -12.22203 -11.96547 -11.82848 -11.45716 -11.35410 -10.61229 -9.53568 -9.33061 -8.22792 -6.35100 0.03110 0.22699 1.11863 1.38378 1.39159 1.50311 2.34670 2.50340 3.08904 3.34010 3.69965 3.81767 4.03069 4.21125 4.44931 4.65416 4.68082 4.77477 4.78452 4.88945 5.03239 5.12287 5.16358 5.24720 5.30340 5.41114 5.69833 5.71062 5.85840 6.11918 6.74584 7.32698 8.87162 Molecular weight = 242.06amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.008374 C = 0.006804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.989593 B = 3343.073662 C = 4114.537467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.112 4.112 3 C -0.092 4.092 4 C -0.043 4.043 5 Cl -0.053 7.053 6 C -0.069 4.069 7 C -0.108 4.108 8 C -0.090 4.090 9 C 0.060 3.940 10 C -0.524 4.524 11 H 0.050 0.950 12 C 0.010 3.990 13 N -0.927 5.927 14 Si 0.962 3.038 15 H -0.275 1.275 16 H -0.277 1.277 17 H -0.264 1.264 18 C 0.072 3.928 19 F -0.147 7.147 20 H 0.088 0.912 21 H 0.100 0.900 22 H 0.061 0.939 23 H 0.174 0.826 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.087 0.913 27 H -0.002 1.002 28 H 0.027 0.973 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 13.978 -1.273 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.114 4.114 3 C -0.110 4.110 4 C -0.070 4.070 5 Cl -0.024 7.024 6 C -0.070 4.070 7 C -0.164 4.164 8 C -0.091 4.091 9 C 0.023 3.977 10 C -0.561 4.561 11 H 0.069 0.931 12 C -0.189 4.189 13 N -0.566 5.566 14 Si 0.786 3.214 15 H -0.201 1.201 16 H -0.202 1.202 17 H -0.189 1.189 18 C 0.052 3.948 19 F -0.126 7.126 20 H 0.107 0.893 21 H 0.119 0.881 22 H 0.080 0.920 23 H 0.191 0.809 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.016 0.984 28 H 0.045 0.955 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.280 13.914 -1.316 15.322 hybrid contribution 0.388 -1.090 0.674 1.339 sum -5.891 12.824 -0.642 14.127 Atomic orbital electron populations 1.20772 0.87330 1.04215 1.03928 1.20107 0.98681 0.90152 1.02418 1.20930 0.91082 0.98551 1.00475 1.20806 0.92817 0.86475 1.06897 1.98324 1.76890 1.30275 1.96914 1.19547 0.97615 0.90048 0.99809 1.20798 0.89600 1.03068 1.02975 1.20326 0.92598 0.97310 0.98912 1.18053 0.94388 0.88220 0.96994 1.21196 1.36300 1.06819 0.91832 0.93148 1.25839 0.95131 0.96299 1.01602 1.70067 1.38909 1.14707 1.32954 0.85495 0.77829 0.78556 0.79515 1.20065 1.20184 1.18874 1.17820 0.89635 0.81672 1.05631 1.91409 1.79938 1.47234 1.93981 0.89333 0.88099 0.92040 0.80876 0.90923 0.91962 0.89458 0.98409 0.95468 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 9.84 71.24 0.70 -1.67 15 2 C -0.11 -3.47 5.89 -19.82 -0.12 -3.59 15 3 C -0.09 -2.50 9.48 22.29 0.21 -2.29 15 4 C -0.04 -1.34 6.31 22.32 0.14 -1.20 15 5 Cl -0.05 -1.35 27.29 -2.72 -0.07 -1.42 15 6 C -0.07 -2.64 5.88 -19.85 -0.12 -2.76 15 7 C -0.11 -3.88 9.21 71.24 0.66 -3.23 15 8 C -0.09 -4.05 5.08 -19.82 -0.10 -4.15 15 9 C 0.06 3.24 4.51 29.10 0.13 3.37 15 10 C -0.52 -30.00 9.09 25.60 0.23 -29.77 15 11 H 0.05 2.87 7.74 -2.91 -0.02 2.85 15 12 C 0.01 0.57 5.46 84.66 0.46 1.03 15 13 N -0.93 -55.72 13.29 21.45 0.28 -55.43 15 14 Si 0.96 44.47 29.54 68.60 2.03 46.49 15 15 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 15 17 H -0.26 -11.77 7.11 99.48 0.71 -11.06 15 18 C 0.07 2.94 7.18 22.37 0.16 3.10 15 19 F -0.15 -6.57 15.69 44.97 0.71 -5.86 15 20 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.10 1.62 8.09 -2.39 -0.02 1.60 15 22 H 0.06 1.51 7.63 -2.38 -0.02 1.49 15 23 H 0.17 3.28 8.06 -2.91 -0.02 3.26 15 24 H 0.07 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.06 2.48 5.95 -2.39 -0.01 2.47 15 26 H 0.09 2.58 6.90 -2.39 -0.02 2.57 15 27 H 0.00 -0.14 7.65 -2.39 -0.02 -0.16 15 28 H 0.03 1.51 5.95 -2.39 -0.01 1.50 15 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 Total: -1.00 -64.18 267.60 6.47 -57.71 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: 1.16 Total: -0.34 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 2.36 Total: -41.16 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.43 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.71 Total: -5.86 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.42 kcal Total: -64.18 6.47 -57.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207275.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.717 kcal (2) G-P(sol) polarization free energy of solvation -64.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds