Wall clock time and date at job start Mon Mar 30 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99551 * 2 1 4 4 H 1.48502 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47300 * 299.99668 * 3 2 1 6 6 H 1.48502 * 109.47251 * 59.99838 * 3 2 1 7 7 C 1.37877 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99714 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.54890 * 300.18319 * 9 7 2 11 11 C 1.53181 * 109.62058 * 60.41409 * 9 7 2 12 12 C 1.53092 * 109.15343 * 176.92640 * 11 9 7 13 13 O 1.42895 * 109.42312 * 302.38895 * 12 11 9 14 14 C 1.42889 * 114.10377 * 61.13450 * 13 12 11 15 15 C 1.53109 * 109.42263 * 298.84983 * 14 13 12 16 16 C 1.52598 * 109.58821 * 177.62884 * 15 14 13 17 17 C 1.52583 * 110.69488 * 49.40878 * 16 15 14 18 18 C 1.53102 * 109.95022 * 70.73335 * 17 16 15 19 19 S 1.81744 * 108.84446 * 296.98266 * 18 17 16 20 20 C 1.53119 * 109.33148 * 298.14888 * 15 14 13 21 21 H 0.96998 * 120.00358 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.52205 * 296.83187 * 11 9 7 23 23 H 1.09000 * 109.52370 * 56.96310 * 11 9 7 24 24 H 1.09006 * 109.47804 * 62.37260 * 12 11 9 25 25 H 1.09000 * 109.47956 * 182.40128 * 12 11 9 26 26 H 1.09004 * 109.47891 * 178.86773 * 14 13 12 27 27 H 1.08996 * 109.48042 * 58.83395 * 14 13 12 28 28 H 1.09004 * 109.23387 * 289.09597 * 16 15 14 29 29 H 1.09007 * 109.20224 * 169.70424 * 16 15 14 30 30 H 1.08995 * 109.39113 * 310.58965 * 17 16 15 31 31 H 1.08995 * 109.39271 * 190.88062 * 17 16 15 32 32 H 1.08999 * 109.57347 * 177.17689 * 18 17 16 33 33 H 1.09001 * 109.57685 * 56.79273 * 18 17 16 34 34 H 1.08993 * 109.57584 * 182.95528 * 20 15 14 35 35 H 1.08994 * 109.57636 * 62.56257 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6212 -2.5566 0.8882 11 6 0.3775 -2.5887 -1.2545 12 6 -0.3235 -3.9494 -1.2825 13 8 0.6560 -4.9893 -1.2481 14 6 1.4718 -4.9839 -0.0750 15 6 2.2452 -3.6647 0.0012 16 6 3.0728 -3.6303 1.2828 17 6 3.8777 -4.9170 1.4397 18 6 5.0046 -4.9578 0.4040 19 16 4.2724 -4.9862 -1.2592 20 6 3.1653 -3.5455 -1.2169 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3689 -1.7946 -1.2361 23 1 1.0019 -2.4812 -2.1415 24 1 -0.9789 -4.0385 -0.4161 25 1 -0.9134 -4.0357 -2.1950 26 1 2.1751 -5.8156 -0.1176 27 1 0.8402 -5.0865 0.8074 28 1 2.4062 -3.5173 2.1378 29 1 3.7559 -2.7816 1.2458 30 1 3.2211 -5.7747 1.2940 31 1 4.3054 -4.9565 2.4415 32 1 5.6058 -5.8546 0.5537 33 1 5.6319 -4.0730 0.5119 34 1 3.7562 -2.6328 -1.1402 35 1 2.5654 -3.5191 -2.1265 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259624373.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:38 Heat of formation + Delta-G solvation = -63.603236 kcal Electronic energy + Delta-G solvation = -16882.573677 eV Core-core repulsion = 14391.909923 eV Total energy + Delta-G solvation = -2490.663755 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.41361 -35.77792 -33.80251 -31.55885 -30.16660 -26.94439 -26.34374 -25.78443 -22.83266 -22.21264 -20.06366 -18.09723 -16.50811 -16.42531 -15.23702 -14.90137 -14.63699 -14.39341 -14.08518 -13.21093 -13.12230 -12.93269 -12.68714 -12.36539 -12.23829 -11.50791 -11.11785 -11.00157 -10.87802 -10.75294 -10.61152 -10.42084 -10.25077 -10.12119 -9.66135 -9.45796 -9.07159 -8.79094 -8.50886 -8.23818 -7.13422 -6.08120 -4.14171 2.30564 3.09338 3.23072 3.32248 3.34712 4.35614 4.65428 5.08212 5.15305 5.24713 5.44598 5.48832 5.61550 5.74837 5.90860 5.94793 6.09151 6.10684 6.22042 6.23648 6.30854 6.38749 6.47891 6.52177 6.77024 6.79201 6.90764 7.05171 7.28095 7.56331 7.82514 7.87751 8.09994 8.31578 8.87285 9.50951 10.97608 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.010353 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.518852 B = 2703.988295 C = 3316.454075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.065 3.935 10 H 0.029 0.971 11 C -0.145 4.145 12 C 0.054 3.946 13 O -0.388 6.388 14 C 0.067 3.933 15 C -0.082 4.082 16 C -0.106 4.106 17 C -0.129 4.129 18 C -0.076 4.076 19 S -0.305 6.305 20 C -0.037 4.037 21 H 0.260 0.740 22 H 0.098 0.902 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -7.618 1.370 8.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.045 3.955 10 H 0.047 0.953 11 C -0.183 4.183 12 C -0.023 4.023 13 O -0.306 6.306 14 C -0.010 4.010 15 C -0.084 4.084 16 C -0.144 4.144 17 C -0.167 4.167 18 C -0.224 4.224 19 S -0.077 6.077 20 C -0.185 4.185 21 H 0.070 0.930 22 H 0.116 0.884 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.579 -8.359 0.363 9.538 hybrid contribution 0.171 2.164 1.173 2.468 sum 4.750 -6.195 1.537 7.956 Atomic orbital electron populations 1.69871 1.05872 1.26397 1.50637 1.24947 0.94799 0.99000 0.95055 0.86610 0.80177 0.84084 0.77598 1.19830 1.21044 1.21105 1.21159 0.92776 0.90201 1.50524 0.92411 1.18724 0.91660 0.90862 0.94204 0.95276 1.22294 1.01103 0.95376 0.99568 1.22756 0.90413 0.89122 0.99979 1.87823 1.48865 1.51895 1.42063 1.22874 0.92845 0.97860 0.87397 1.21285 0.96319 0.97798 0.93016 1.21409 0.98681 0.96305 0.97976 1.21857 0.96872 1.00169 0.97821 1.23336 0.99889 1.04825 0.94370 1.86591 1.55716 1.44698 1.20716 1.23590 0.97354 0.94919 1.02618 0.93013 0.88387 0.93542 0.94467 0.90812 0.88488 0.94519 0.91528 0.91122 0.90877 0.91642 0.88887 0.90388 0.89384 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.13 11.40 55.43 0.63 -23.49 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -12.77 7.27 -34.44 -0.25 -13.02 16 8 H 0.06 1.44 5.77 -52.48 -0.30 1.14 16 9 C 0.07 1.50 1.43 -91.58 -0.13 1.37 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.15 -3.26 4.79 -26.59 -0.13 -3.39 16 12 C 0.05 1.06 6.84 37.20 0.25 1.31 16 13 O -0.39 -7.73 10.21 -35.23 -0.36 -8.09 16 14 C 0.07 1.24 4.58 37.21 0.17 1.41 16 15 C -0.08 -1.58 0.27 -154.50 -0.04 -1.62 16 16 C -0.11 -1.85 4.19 -27.15 -0.11 -1.96 16 17 C -0.13 -1.81 5.56 -26.89 -0.15 -1.96 16 18 C -0.08 -1.07 6.45 37.21 0.24 -0.83 16 19 S -0.30 -5.19 20.74 -107.50 -2.23 -7.42 16 20 C -0.04 -0.72 4.51 37.22 0.17 -0.55 16 21 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 22 H 0.10 2.45 6.21 -51.93 -0.32 2.12 16 23 H 0.05 1.06 6.53 -51.93 -0.34 0.72 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.10 1.68 5.01 -51.93 -0.26 1.42 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 29 H 0.07 1.31 7.10 -51.93 -0.37 0.95 16 30 H 0.07 1.02 5.85 -51.93 -0.30 0.72 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.79 6.60 -51.93 -0.34 1.45 16 35 H 0.10 2.16 6.02 -51.93 -0.31 1.85 16 LS Contribution 266.88 15.07 4.02 4.02 Total: -1.00 -26.31 266.88 -8.10 -34.41 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.07 Total: 2.78 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -0.08 Total: -17.69 kcal Atomic # 7 Polarization: -24.13 SS G_CDS: 0.63 Total: -23.49 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.36 Total: -8.09 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: -5.19 SS G_CDS: -2.23 Total: -7.42 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.31 -8.10 -34.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624373.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.193 kcal (2) G-P(sol) polarization free energy of solvation -26.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds