Wall clock time and date at job start Mon Mar 30 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.36014 * 116.99807 * 179.97438 * 3 2 1 5 5 C 1.38823 * 120.07148 * 269.73220 * 4 3 2 6 6 F 1.35105 * 120.03670 * 359.97438 * 5 4 3 7 7 C 1.38377 * 119.93060 * 179.70038 * 5 4 3 8 8 C 1.38253 * 120.06388 * 0.57448 * 7 5 4 9 9 C 1.50704 * 119.92633 * 179.74641 * 8 7 5 10 10 C 1.50698 * 109.47021 * 269.97523 * 9 8 7 11 11 H 1.08000 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99926 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00267 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00395 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46819 * 90.00244 * 14 12 10 16 16 H 1.48494 * 109.47343 * 210.00642 * 14 12 10 17 17 H 1.48503 * 109.46886 * 330.00688 * 14 12 10 18 18 C 1.38253 * 120.14332 * 359.71748 * 8 7 5 19 19 C 1.38372 * 120.06420 * 359.97438 * 18 8 7 20 20 F 1.35103 * 120.03280 * 180.02562 * 19 18 8 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 24 24 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 25 25 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 26 26 H 1.07997 * 119.97053 * 180.29627 * 7 5 4 27 27 H 1.08999 * 109.47353 * 29.97909 * 9 8 7 28 28 H 1.09001 * 109.47320 * 149.97528 * 9 8 7 29 29 H 0.96999 * 120.00493 * 179.97438 * 13 12 10 30 30 H 1.07995 * 119.96259 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3547 1.5256 0.0005 5 6 4.0431 1.6225 1.2022 6 9 3.3743 1.5404 2.3732 7 6 5.4158 1.7976 1.1994 8 6 6.1000 1.8880 0.0014 9 6 7.5942 2.0844 0.0020 10 6 7.9070 3.5586 0.0020 11 1 7.1041 4.2810 0.0013 12 6 9.2181 3.9851 0.0020 13 7 9.4912 5.2716 0.0025 14 14 10.6068 2.7357 0.0026 15 1 10.9749 2.4041 -1.3974 16 1 11.7856 3.3061 0.7026 17 1 10.1637 1.5034 0.7029 18 6 5.4165 1.7979 -1.1970 19 6 4.0448 1.6164 -1.2007 20 9 3.3776 1.5280 -2.3722 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 5.9525 1.8683 2.1338 27 1 8.0211 1.6223 0.8921 28 1 8.0218 1.6223 -0.8878 29 1 10.4136 5.5716 0.0028 30 1 5.9540 1.8685 -2.1310 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308791109.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:32 Heat of formation + Delta-G solvation = -132.213128 kcal Electronic energy + Delta-G solvation = -16919.795916 eV Core-core repulsion = 13736.483532 eV Total energy + Delta-G solvation = -3183.312384 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.09554 -50.05962 -40.69197 -38.95674 -35.24269 -33.36849 -32.03645 -31.42313 -28.95040 -25.18283 -24.13723 -23.92475 -22.36795 -19.37984 -18.97836 -18.70559 -18.46245 -17.32587 -16.85248 -16.42423 -16.36828 -16.12256 -16.05693 -15.60197 -15.14862 -14.41885 -14.31656 -13.80942 -13.71272 -13.40976 -13.25052 -12.85913 -12.59041 -12.56067 -12.35781 -11.93384 -11.80095 -11.56868 -11.05824 -10.77061 -9.85438 -9.60685 -8.27854 -6.35183 -0.19686 -0.11407 1.42783 1.44429 1.55252 2.10400 2.38287 2.40435 2.76338 3.06453 3.30672 3.69526 3.71903 4.04840 4.15753 4.17687 4.31180 4.36667 4.64981 4.77219 4.83751 4.85213 4.93043 5.04456 5.05441 5.18948 5.47289 5.59046 5.59846 6.22523 6.26998 6.72047 7.28842 8.88427 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.040141 B = 0.005736 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.366773 B = 4880.280003 C = 5179.000694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.336 6.336 4 C 0.007 3.993 5 C 0.105 3.895 6 F -0.129 7.129 7 C -0.149 4.149 8 C 0.004 3.996 9 C 0.019 3.981 10 C -0.526 4.526 11 H 0.030 0.970 12 C 0.011 3.989 13 N -0.949 5.949 14 Si 0.950 3.050 15 H -0.265 1.265 16 H -0.288 1.288 17 H -0.237 1.237 18 C -0.149 4.149 19 C 0.105 3.895 20 F -0.129 7.129 21 H 0.103 0.897 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.155 0.845 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.268 0.732 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 -13.804 0.016 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 O -0.254 6.254 4 C -0.039 4.039 5 C 0.085 3.915 6 F -0.107 7.107 7 C -0.168 4.168 8 C 0.003 3.997 9 C -0.019 4.019 10 C -0.564 4.564 11 H 0.049 0.951 12 C -0.187 4.187 13 N -0.589 5.589 14 Si 0.772 3.228 15 H -0.190 1.190 16 H -0.214 1.214 17 H -0.160 1.160 18 C -0.168 4.168 19 C 0.085 3.915 20 F -0.107 7.107 21 H 0.121 0.879 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.173 0.827 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.034 -13.564 0.019 18.133 hybrid contribution 0.585 0.160 -0.022 0.607 sum -11.449 -13.405 -0.003 17.628 Atomic orbital electron populations 1.21774 0.90856 1.04237 1.03218 1.23131 0.97495 0.80775 1.01353 1.86126 1.15534 1.29545 1.94205 1.18431 0.84871 1.10040 0.90564 1.17673 0.89952 1.03477 0.80351 1.91480 1.80564 1.93646 1.45052 1.21204 0.91328 1.03504 1.00723 1.19871 0.97660 0.90964 0.91174 1.18774 0.87889 0.95718 0.99472 1.21100 0.92672 0.91098 1.51556 0.95118 1.25967 1.01772 0.97206 0.93744 1.70055 1.20506 1.16435 1.51864 0.85668 0.77765 0.79892 0.79440 1.18958 1.21408 1.15963 1.21206 0.91364 1.03478 1.00719 1.17677 0.89986 1.03458 0.80346 1.91480 1.80644 1.93607 1.45009 0.87853 0.91780 0.91785 0.92217 0.92216 0.82746 0.93228 0.93363 0.92310 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.28 71.98 0.74 -1.70 16 2 C 0.05 1.06 6.78 71.98 0.49 1.55 16 3 O -0.34 -10.59 9.79 -93.71 -0.92 -11.51 16 4 C 0.01 0.22 5.74 22.55 0.13 0.35 16 5 C 0.11 3.55 7.31 22.44 0.16 3.71 16 6 F -0.13 -4.21 17.11 44.97 0.77 -3.44 16 7 C -0.15 -5.18 9.67 22.31 0.22 -4.96 16 8 C 0.00 0.14 5.07 -19.86 -0.10 0.04 16 9 C 0.02 0.78 4.17 29.10 0.12 0.90 16 10 C -0.53 -28.46 9.65 25.60 0.25 -28.21 16 11 H 0.03 1.88 7.98 -2.91 -0.02 1.86 16 12 C 0.01 0.59 5.47 84.65 0.46 1.05 16 13 N -0.95 -57.48 13.96 21.45 0.30 -57.18 16 14 Si 0.95 40.75 27.47 68.60 1.88 42.63 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 16 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16 18 C -0.15 -5.17 9.67 22.31 0.22 -4.96 16 19 C 0.11 3.54 7.31 22.44 0.16 3.70 16 20 F -0.13 -4.20 17.11 44.97 0.77 -3.43 16 21 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.15 4.99 8.06 -2.91 -0.02 4.97 16 27 H 0.05 1.97 7.14 -2.39 -0.02 1.95 16 28 H 0.05 1.89 7.51 -2.39 -0.02 1.87 16 29 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.16 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -62.65 275.08 6.75 -55.90 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.09 Total: 5.53 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 2.85 Total: -28.52 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.30 Total: -57.18 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.92 Total: -11.51 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 1.54 Total: -6.87 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.88 Total: 42.63 kcal Total: -62.65 6.75 -55.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308791109.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.310 kcal (2) G-P(sol) polarization free energy of solvation -62.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds