Wall clock time and date at job start Mon Mar 30 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30329 * 125.96237 * 2 1 4 4 N 1.39882 * 109.25097 * 180.12857 * 3 2 1 5 5 C 1.40051 * 125.68384 * 179.80430 * 4 3 2 6 6 C 1.38903 * 120.07023 * 179.97438 * 5 4 3 7 7 C 1.38080 * 119.93049 * 180.29631 * 6 5 4 8 8 C 1.38316 * 120.07071 * 359.73009 * 7 6 5 9 9 C 1.38263 * 120.13996 * 359.97438 * 8 7 6 10 10 C 1.50693 * 119.96338 * 180.02562 * 9 8 7 11 11 C 1.38133 * 120.07062 * 0.02562 * 9 8 7 12 12 C 1.34750 * 108.62547 * 359.53781 * 4 3 2 13 13 C 1.39285 * 107.15907 * 0.26707 * 12 4 3 14 14 C 1.41529 * 126.55555 * 180.02562 * 13 12 4 15 15 H 1.08000 * 119.99817 * 179.97438 * 14 13 12 16 16 C 1.39704 * 120.00157 * 359.97438 * 14 13 12 17 17 N 1.31018 * 120.00139 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00176 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46926 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47147 * 119.99598 * 18 16 14 21 21 H 1.48500 * 109.47186 * 239.99935 * 18 16 14 22 22 H 1.09000 * 109.47224 * 270.37140 * 1 2 3 23 23 H 1.08996 * 109.47358 * 30.37346 * 1 2 3 24 24 H 1.09001 * 109.47292 * 150.37712 * 1 2 3 25 25 H 1.08004 * 120.03346 * 0.02562 * 6 5 4 26 26 H 1.08007 * 119.96866 * 179.74687 * 7 6 5 27 27 H 1.07996 * 119.92674 * 179.97438 * 8 7 6 28 28 H 1.08995 * 109.47383 * 270.02049 * 10 9 8 29 29 H 1.08999 * 109.47624 * 30.02220 * 10 9 8 30 30 H 1.09007 * 109.46934 * 150.01635 * 10 9 8 31 31 H 1.08002 * 120.03216 * 179.97438 * 11 9 8 32 32 H 1.07997 * 126.42048 * 180.29914 * 12 4 3 33 33 H 0.96999 * 120.00270 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2723 1.0549 0.0000 4 7 3.6120 0.6527 -0.0030 5 6 4.7216 1.5073 -0.0077 6 6 6.0065 0.9796 -0.0098 7 6 7.0984 1.8249 -0.0083 8 6 6.9137 3.1956 -0.0104 9 6 5.6360 3.7240 -0.0146 10 6 5.4394 5.2181 -0.0175 11 6 4.5396 2.8838 -0.0161 12 6 3.6571 -0.6941 0.0055 13 6 2.3407 -1.1492 0.0076 14 6 1.9156 -2.4991 0.0164 15 1 0.8612 -2.7332 0.0176 16 6 2.8597 -3.5288 0.0233 17 7 4.1387 -3.2449 0.0213 18 14 2.2986 -5.3106 0.0356 19 1 0.8145 -5.3621 0.0367 20 1 2.8174 -6.0013 -1.1724 21 1 2.8177 -5.9847 1.2526 22 1 -0.3634 0.0067 1.0276 23 1 -0.3634 0.8866 -0.5196 24 1 -0.3634 -0.8933 -0.5080 25 1 6.1514 -0.0907 -0.0081 26 1 8.0977 1.4153 -0.0057 27 1 7.7693 3.8546 -0.0088 28 1 5.3896 5.5800 1.0094 29 1 6.2754 5.6936 -0.5302 30 1 4.5107 5.4613 -0.5339 31 1 3.5418 3.2972 -0.0189 32 1 4.5471 -1.3058 0.0103 33 1 4.7943 -3.9598 0.0257 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259108564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:42 Heat of formation + Delta-G solvation = 83.083311 kcal Electronic energy + Delta-G solvation = -16419.938900 eV Core-core repulsion = 13832.484751 eV Total energy + Delta-G solvation = -2587.454149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.99995 -38.41006 -33.89555 -33.13765 -31.85395 -29.84238 -28.82962 -27.14605 -26.15209 -24.95405 -21.89468 -21.33722 -19.26078 -18.34566 -17.28132 -16.20560 -15.52539 -14.67801 -14.39651 -14.15241 -13.79266 -13.40275 -12.93607 -12.68566 -12.60346 -12.37251 -12.17135 -11.91824 -11.53911 -11.40077 -11.20376 -11.11943 -10.93797 -10.62343 -10.39230 -9.86154 -9.51393 -9.07188 -8.96847 -8.36293 -7.52268 -7.04200 -6.53915 -4.12330 1.62062 1.79002 3.04218 3.15494 3.20110 3.33892 3.66928 4.08219 4.09570 4.40621 5.10155 5.18442 5.42234 5.50650 5.56457 5.73371 5.77835 5.85541 5.95149 6.04952 6.06514 6.27262 6.37976 6.39040 6.56101 6.74074 6.81860 6.94655 6.96736 7.23336 7.34143 7.48219 7.70229 7.76686 8.31926 8.73300 8.93131 9.01342 9.22618 10.46107 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.031198 B = 0.006376 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.287157 B = 4390.661324 C = 5267.491685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.041 3.959 3 N -0.330 5.330 4 N -0.336 5.336 5 C 0.212 3.788 6 C -0.165 4.165 7 C -0.086 4.086 8 C -0.169 4.169 9 C -0.065 4.065 10 C -0.109 4.109 11 C -0.153 4.153 12 C -0.078 4.078 13 C -0.032 4.032 14 C -0.418 4.418 15 H 0.075 0.925 16 C 0.055 3.945 17 N -0.835 5.835 18 Si 0.918 3.082 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.131 0.869 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.198 0.802 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 7.579 -0.032 8.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.128 4.128 3 N -0.150 5.150 4 N -0.113 5.113 5 C 0.114 3.886 6 C -0.187 4.187 7 C -0.104 4.104 8 C -0.188 4.188 9 C -0.066 4.066 10 C -0.166 4.166 11 C -0.174 4.174 12 C -0.215 4.215 13 C -0.040 4.040 14 C -0.451 4.451 15 H 0.093 0.907 16 C -0.155 4.155 17 N -0.466 5.466 18 Si 0.744 3.256 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.204 1.204 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.149 0.851 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.214 0.786 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.170 8.601 -0.035 9.167 hybrid contribution -0.059 -1.884 0.032 1.886 sum 3.110 6.717 -0.002 7.402 Atomic orbital electron populations 1.19931 0.88138 1.01794 1.01509 1.22653 0.95834 0.91934 1.02342 1.76409 0.86959 1.24314 1.27321 1.45101 1.02368 1.05250 1.58611 1.17574 0.85108 0.89433 0.96518 1.20865 0.90436 1.00882 1.06527 1.20815 0.97844 0.93110 0.98677 1.20778 0.96085 0.95014 1.06944 1.19636 0.92769 0.95412 0.98749 1.20738 1.02217 0.91661 1.01983 1.20638 0.99254 0.91157 1.06324 1.23917 1.01510 0.80251 1.15805 1.18111 0.89632 0.93002 1.03299 1.18863 0.93868 0.88797 1.43586 0.90660 1.25624 0.94476 1.01129 0.94271 1.69442 1.01380 1.33795 1.42022 0.86088 0.79592 0.81820 0.78118 1.18869 1.20348 1.20355 0.91870 0.92563 0.90886 0.85125 0.86062 0.86698 0.91451 0.91823 0.91722 0.85384 0.78617 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.05 10.24 36.00 0.37 -0.68 16 2 C 0.04 1.00 7.28 -81.80 -0.60 0.41 16 3 N -0.33 -8.26 11.73 34.02 0.40 -7.86 16 4 N -0.34 -8.42 3.77 -9.87 -0.04 -8.46 16 5 C 0.21 4.60 6.68 -83.63 -0.56 4.05 16 6 C -0.17 -3.21 9.44 -39.39 -0.37 -3.58 16 7 C -0.09 -1.36 10.04 -39.61 -0.40 -1.75 16 8 C -0.17 -2.50 9.70 -39.54 -0.38 -2.88 16 9 C -0.06 -1.02 5.88 -104.65 -0.62 -1.64 16 10 C -0.11 -1.30 10.01 36.00 0.36 -0.94 16 11 C -0.15 -2.93 9.30 -39.39 -0.37 -3.29 16 12 C -0.08 -2.09 9.76 -15.88 -0.15 -2.24 16 13 C -0.03 -0.87 5.94 -106.82 -0.63 -1.50 16 14 C -0.42 -11.12 9.15 -37.78 -0.35 -11.46 16 15 H 0.08 1.89 7.37 -52.49 -0.39 1.50 16 16 C 0.05 1.40 5.49 -17.35 -0.10 1.31 16 17 N -0.84 -21.85 10.33 55.54 0.57 -21.27 16 18 Si 0.92 19.31 29.56 -169.99 -5.02 14.28 16 19 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.07 1.33 7.61 -51.93 -0.40 0.94 16 25 H 0.13 2.59 6.71 -52.48 -0.35 2.24 16 26 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 27 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.06 0.74 8.08 -51.92 -0.42 0.33 16 31 H 0.13 2.50 7.68 -52.49 -0.40 2.09 16 32 H 0.20 5.33 4.70 -52.49 -0.25 5.08 16 33 H 0.27 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 284.70 15.07 4.29 4.29 Total: -1.00 -29.39 284.70 -7.46 -36.85 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.87 Total: 6.40 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -3.79 Total: -24.23 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.94 Total: -37.59 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.39 -7.46 -36.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259108564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.936 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds