Wall clock time and date at job start Mon Mar 30 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38375 * 119.64828 * 2 1 4 4 C 1.38504 * 120.30129 * 179.97438 * 3 2 1 5 5 N 1.38882 * 120.19610 * 180.26609 * 4 3 2 6 6 C 1.41507 * 119.60165 * 359.97438 * 4 3 2 7 7 C 1.40908 * 120.34095 * 180.02562 * 6 4 3 8 8 H 1.08003 * 119.99388 * 39.82157 * 7 6 4 9 9 C 1.39901 * 120.00524 * 219.82637 * 7 6 4 10 10 N 1.30933 * 120.00159 * 19.53653 * 9 7 6 11 11 Si 1.86797 * 120.00336 * 199.54339 * 9 7 6 12 12 H 1.48495 * 109.47232 * 89.99452 * 11 9 7 13 13 H 1.48495 * 109.47423 * 209.99746 * 11 9 7 14 14 H 1.48503 * 109.46974 * 329.99386 * 11 9 7 15 15 C 1.41268 * 119.32197 * 0.02562 * 6 4 3 16 16 O 1.35707 * 120.15539 * 179.97438 * 15 6 4 17 17 C 1.42907 * 116.99571 * 179.97438 * 16 15 6 18 18 F 1.39901 * 109.47196 * 299.99958 * 17 16 15 19 19 F 1.39899 * 109.47225 * 60.00057 * 17 16 15 20 20 C 1.38183 * 119.68430 * 359.97438 * 15 6 4 21 21 H 1.08996 * 109.47340 * 270.00740 * 1 2 3 22 22 H 1.09001 * 109.46810 * 30.00757 * 1 2 3 23 23 H 1.08999 * 109.46731 * 150.00513 * 1 2 3 24 24 H 1.07996 * 119.85235 * 359.97438 * 3 2 1 25 25 H 0.97006 * 119.99607 * 172.63600 * 5 4 3 26 26 H 0.96999 * 120.00551 * 352.64938 * 5 4 3 27 27 H 0.96995 * 120.00343 * 174.61464 * 10 9 7 28 28 H 1.09003 * 109.47035 * 180.02562 * 17 16 15 29 29 H 1.08000 * 119.80906 * 180.02562 * 20 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1916 1.2026 0.0000 4 6 3.5765 1.2184 0.0005 5 7 4.2613 2.4266 0.0061 6 6 4.2895 -0.0040 0.0016 7 6 5.6986 -0.0061 0.0027 8 1 6.2391 0.7118 0.6019 9 6 6.3974 -0.9379 -0.7722 10 7 5.7993 -1.5404 -1.7690 11 14 8.1838 -1.3228 -0.3849 12 1 8.2494 -2.4485 0.5812 13 1 8.8909 -1.7012 -1.6346 14 1 8.8313 -0.1244 0.2067 15 6 3.5742 -1.2221 0.0016 16 8 4.2408 -2.4042 0.0021 17 6 3.4503 -3.5947 0.0026 18 9 2.6429 -3.6179 1.1449 19 9 2.6429 -3.6189 -1.1396 20 6 2.1924 -1.2043 0.0011 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8899 -0.5140 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6435 2.1331 -0.0004 25 1 5.2253 2.4372 0.1142 26 1 3.7758 3.2599 -0.0978 27 1 6.3036 -2.1269 -2.3542 28 1 4.1055 -4.4659 0.0035 29 1 1.6435 -2.1344 0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717543.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:18 Heat of formation + Delta-G solvation = -128.712008 kcal Electronic energy + Delta-G solvation = -18102.103202 eV Core-core repulsion = 14853.516728 eV Total energy + Delta-G solvation = -3248.586475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.081 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.42445 -46.42596 -38.52315 -36.38195 -33.89627 -32.93061 -30.25039 -27.36767 -27.33342 -25.19929 -23.51658 -20.85797 -20.09736 -17.82323 -17.36733 -16.95391 -16.51030 -15.84583 -15.00282 -14.61714 -14.08288 -13.49711 -13.46726 -13.07743 -12.95016 -12.80055 -12.51163 -12.26132 -12.00274 -11.79248 -11.38346 -11.18054 -11.10748 -10.96081 -10.64748 -10.47267 -10.00379 -9.46700 -8.94976 -8.79582 -6.86098 -6.54657 -6.30639 -4.06564 2.83244 3.04775 3.17591 3.20492 3.22813 3.85545 4.11187 4.41402 4.78492 5.18917 5.26262 5.42798 5.68990 6.01101 6.07302 6.37309 6.40895 6.50869 6.56410 6.85467 7.13743 7.33928 7.42560 7.70497 7.88229 7.99561 8.28828 8.51752 8.78838 8.94635 9.10775 9.16817 10.48954 Molecular weight = 243.08amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.012802 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.621575 B = 2186.558587 C = 3317.683771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.124 4.124 3 C -0.201 4.201 4 C 0.157 3.843 5 N -0.878 5.878 6 C 0.058 3.942 7 C -0.481 4.481 8 H 0.072 0.928 9 C 0.089 3.911 10 N -0.788 5.788 11 Si 0.900 3.100 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.074 3.926 16 O -0.275 6.275 17 C 0.402 3.598 18 F -0.216 7.216 19 F -0.209 7.209 20 C -0.209 4.209 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.091 0.909 25 H 0.394 0.606 26 H 0.380 0.620 27 H 0.275 0.725 28 H 0.154 0.846 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -1.232 2.041 3.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.225 4.225 4 C 0.054 3.946 5 N -0.419 5.419 6 C 0.053 3.947 7 C -0.512 4.512 8 H 0.090 0.910 9 C -0.128 4.128 10 N -0.414 5.414 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.192 1.192 15 C 0.029 3.971 16 O -0.190 6.190 17 C 0.309 3.691 18 F -0.198 7.198 19 F -0.191 7.191 20 C -0.229 4.229 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.110 0.890 25 H 0.223 0.777 26 H 0.205 0.795 27 H 0.085 0.915 28 H 0.171 0.829 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.358 -1.542 1.885 3.390 hybrid contribution 0.688 -0.105 -0.055 0.699 sum -1.670 -1.647 1.830 2.975 Atomic orbital electron populations 1.20478 0.93401 1.00605 1.00151 1.18702 0.93740 0.92159 1.07935 1.19858 0.92020 0.96149 1.14444 1.17582 0.90056 0.86254 1.00684 1.41863 1.09556 1.04259 1.86207 1.16329 0.93279 0.86430 0.98710 1.18769 0.90476 1.15813 1.26136 0.90968 1.25554 0.99407 0.93982 0.93854 1.69754 1.37489 1.23145 1.11038 0.86480 0.82969 0.79556 0.78452 1.19676 1.20882 1.19247 1.18632 0.89132 0.84082 1.05248 1.86709 1.32588 1.11525 1.88201 1.23163 0.81317 0.93070 0.71509 1.93019 1.76865 1.97054 1.52907 1.93028 1.76527 1.96986 1.52533 1.20664 0.92637 0.97490 1.12100 0.93281 0.93255 0.93267 0.89039 0.77734 0.79467 0.91489 0.82914 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.99 36.01 0.36 -1.26 15 2 C -0.12 -2.80 5.89 -104.45 -0.62 -3.41 15 3 C -0.20 -4.52 9.50 -39.43 -0.37 -4.90 15 4 C 0.16 3.74 6.78 -83.32 -0.56 3.17 15 5 N -0.88 -17.37 8.96 32.69 0.29 -17.08 15 6 C 0.06 1.53 5.37 -106.49 -0.57 0.96 15 7 C -0.48 -12.63 8.05 -37.95 -0.31 -12.93 15 8 H 0.07 1.81 7.18 -52.48 -0.38 1.44 15 9 C 0.09 2.27 4.42 -17.31 -0.08 2.20 15 10 N -0.79 -20.86 11.29 55.55 0.63 -20.23 15 11 Si 0.90 19.22 29.61 -169.99 -5.03 14.19 15 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 15 C 0.07 1.94 5.96 -38.45 -0.23 1.71 15 16 O -0.27 -6.77 7.40 -18.83 -0.14 -6.91 15 17 C 0.40 7.96 5.98 101.05 0.60 8.57 15 18 F -0.22 -4.30 15.58 2.25 0.04 -4.27 15 19 F -0.21 -4.39 15.58 2.25 0.04 -4.36 15 20 C -0.21 -5.08 7.89 -39.48 -0.31 -5.39 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 22 H 0.05 0.80 8.08 -51.93 -0.42 0.39 15 23 H 0.05 0.85 8.08 -51.93 -0.42 0.43 15 24 H 0.09 1.81 8.06 -52.49 -0.42 1.39 15 25 H 0.39 7.66 7.32 -40.82 -0.30 7.36 15 26 H 0.38 6.25 8.84 -40.82 -0.36 5.88 15 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 15 28 H 0.15 2.29 8.14 -51.93 -0.42 1.86 15 29 H 0.10 2.37 5.07 -52.49 -0.27 2.10 15 LS Contribution 256.78 15.07 3.87 3.87 Total: -1.00 -29.67 256.78 -4.94 -34.61 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -2.54 Total: 11.47 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.09 Total: -11.29 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.92 Total: -37.31 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.14 Total: -6.91 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.67 -4.94 -34.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717543.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.105 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds