Wall clock time and date at job start Mon Mar 30 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47223 * 2 1 4 4 C 1.38897 * 119.62454 * 269.97925 * 3 2 1 5 5 C 1.37761 * 120.74605 * 180.02562 * 4 3 2 6 6 C 1.39517 * 119.53499 * 0.02562 * 5 4 3 7 7 C 1.46449 * 121.94628 * 180.02562 * 6 5 4 8 8 C 1.34353 * 119.41417 * 179.97438 * 7 6 5 9 9 N 1.36625 * 122.38625 * 0.02562 * 8 7 6 10 10 C 1.36970 * 118.86899 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00499 * 149.75315 * 10 9 8 12 12 C 1.39045 * 119.99719 * 329.75384 * 10 9 8 13 13 N 1.31285 * 119.99776 * 342.36245 * 12 10 9 14 14 Si 1.86794 * 120.00209 * 162.35771 * 12 10 9 15 15 H 1.48497 * 109.46968 * 90.00071 * 14 12 10 16 16 H 1.48497 * 109.47460 * 210.00133 * 14 12 10 17 17 H 1.48497 * 109.47081 * 330.00325 * 14 12 10 18 18 C 1.34775 * 122.26918 * 359.95752 * 9 8 7 19 19 O 1.21772 * 120.36418 * 180.02562 * 18 9 8 20 20 C 1.41444 * 119.70390 * 359.95466 * 6 5 4 21 21 C 1.37762 * 119.62885 * 89.99614 * 3 2 1 22 22 H 1.08994 * 109.46951 * 299.99939 * 1 2 3 23 23 H 1.08991 * 109.47263 * 60.00242 * 1 2 3 24 24 H 1.09009 * 109.46504 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47286 * 239.99741 * 2 1 3 26 26 H 1.09005 * 109.47321 * 119.99955 * 2 1 3 27 27 H 1.08004 * 119.63347 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.23543 * 179.97438 * 5 4 3 29 29 H 1.07994 * 120.29044 * 0.24831 * 7 6 5 30 30 H 1.08000 * 118.80326 * 179.97438 * 8 7 6 31 31 H 0.97002 * 119.99893 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.23224 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2617 2.0680 -1.2074 5 6 2.7213 3.3664 -1.2344 6 6 2.9591 4.0369 -0.0342 7 6 3.4472 5.4173 -0.0012 8 6 3.6584 6.0143 1.1837 9 7 3.4348 5.3800 2.3729 10 6 3.6749 6.0573 3.5390 11 1 3.0963 5.8328 4.4229 12 6 4.6636 7.0339 3.5848 13 7 5.5872 7.0771 2.6527 14 14 4.6777 8.2844 4.9723 15 1 5.4893 7.7622 6.1010 16 1 5.2678 9.5572 4.4856 17 1 3.2873 8.5278 5.4334 18 6 2.9857 4.1110 2.4383 19 8 2.7978 3.5793 3.5176 20 6 2.7251 3.3777 1.1952 21 6 2.2593 2.0630 1.1975 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0775 1.5475 -2.1357 28 1 2.8972 3.8616 -2.1779 29 1 3.6314 5.9520 -0.9212 30 1 4.0188 7.0323 1.1965 31 1 6.2771 7.7581 2.6849 32 1 2.0789 1.5516 2.1315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076750607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:11 Heat of formation + Delta-G solvation = -8.138546 kcal Electronic energy + Delta-G solvation = -16780.207452 eV Core-core repulsion = 14091.078964 eV Total energy + Delta-G solvation = -2689.128487 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.08251 -37.96386 -35.77049 -34.18204 -32.45753 -30.52629 -30.40316 -27.82191 -25.71613 -23.78861 -22.79146 -21.35362 -20.68705 -18.61109 -16.83703 -16.60210 -15.65324 -15.03360 -14.39121 -14.29773 -14.12747 -14.08077 -13.30658 -13.18730 -12.97742 -12.43629 -12.34948 -11.88329 -11.56421 -11.34737 -11.16761 -11.04972 -10.94046 -10.70419 -10.61493 -10.28970 -10.23318 -9.26017 -8.80284 -8.50321 -8.32503 -6.97727 -6.58979 -4.40311 1.61235 1.70304 2.98985 3.06257 3.12430 3.18948 3.74912 3.85435 4.50360 4.55411 5.10015 5.14513 5.17921 5.43865 5.47630 5.57643 5.68759 5.76274 5.88518 5.93324 6.05583 6.15060 6.27292 6.35645 6.56547 6.66527 6.77410 6.80621 7.09286 7.16413 7.31533 7.38247 7.55568 7.85840 8.13279 8.71009 8.94254 9.49296 10.23370 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.042985 B = 0.006271 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.236989 B = 4464.254589 C = 4963.810433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.093 4.093 5 C -0.141 4.141 6 C 0.017 3.983 7 C -0.289 4.289 8 C 0.176 3.824 9 N -0.339 5.339 10 C -0.347 4.347 11 H 0.113 0.887 12 C 0.046 3.954 13 N -0.854 5.854 14 Si 0.937 3.063 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.263 1.263 18 C 0.495 3.505 19 O -0.559 6.559 20 C -0.162 4.162 21 C -0.043 4.043 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.158 0.842 31 H 0.281 0.719 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -4.494 -7.230 9.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.137 4.137 4 C -0.112 4.112 5 C -0.160 4.160 6 C 0.014 3.986 7 C -0.313 4.313 8 C 0.047 3.953 9 N -0.035 5.035 10 C -0.474 4.474 11 H 0.130 0.870 12 C -0.163 4.163 13 N -0.488 5.488 14 Si 0.761 3.239 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.187 1.187 18 C 0.294 3.706 19 O -0.444 6.444 20 C -0.166 4.166 21 C -0.062 4.062 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.175 0.825 31 H 0.092 0.908 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.551 -4.671 -6.545 9.239 hybrid contribution 0.391 0.671 0.420 0.883 sum -4.160 -3.999 -6.125 8.415 Atomic orbital electron populations 1.21765 0.95408 1.00971 1.02199 1.20411 0.95679 0.93073 1.02112 1.19569 1.04866 0.96444 0.92852 1.20881 0.98895 0.94681 0.96762 1.20893 1.03318 0.94870 0.96876 1.19080 0.93890 0.93661 0.91955 1.21015 1.18547 0.94900 0.96806 1.21695 0.91184 0.98504 0.83961 1.41142 1.46103 1.09695 1.06590 1.19969 1.19632 1.16974 0.90808 0.86970 1.25583 0.93053 0.98658 0.98982 1.69848 1.11530 1.32685 1.34725 0.85762 0.79430 0.78773 0.79922 1.19601 1.20120 1.18664 1.18227 0.82239 0.81203 0.88961 1.90670 1.55840 1.67473 1.30371 1.19950 1.07827 0.95953 0.92890 1.20775 0.95066 0.92864 0.97481 0.92550 0.92770 0.92992 0.91664 0.91507 0.86910 0.86242 0.85501 0.82516 0.90789 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.34 16 2 C -0.08 -0.98 6.04 -27.88 -0.17 -1.15 16 3 C -0.14 -2.27 5.14 -104.55 -0.54 -2.81 16 4 C -0.09 -1.47 9.65 -39.51 -0.38 -1.85 16 5 C -0.14 -2.44 9.87 -39.28 -0.39 -2.82 16 6 C 0.02 0.36 5.89 -104.89 -0.62 -0.26 16 7 C -0.29 -6.05 10.03 -37.65 -0.38 -6.43 16 8 C 0.18 4.17 8.94 -16.79 -0.15 4.02 16 9 N -0.34 -9.01 2.75 -62.90 -0.17 -9.18 16 10 C -0.35 -9.39 8.98 -14.96 -0.13 -9.53 16 11 H 0.11 3.11 7.53 -52.49 -0.40 2.71 16 12 C 0.05 1.14 4.93 -17.49 -0.09 1.05 16 13 N -0.85 -21.69 11.23 55.50 0.62 -21.07 16 14 Si 0.94 19.13 29.59 -169.99 -5.03 14.10 16 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 18 C 0.50 13.25 7.57 -12.86 -0.10 13.15 16 19 O -0.56 -16.20 16.25 5.12 0.08 -16.11 16 20 C -0.16 -3.74 5.90 -104.82 -0.62 -4.36 16 21 C -0.04 -0.86 9.29 -39.29 -0.36 -1.23 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.06 0.73 8.08 -51.93 -0.42 0.32 16 26 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 27 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 28 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.16 3.67 6.16 -52.49 -0.32 3.35 16 31 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.12 2.47 7.79 -52.49 -0.41 2.06 16 LS Contribution 277.79 15.07 4.19 4.19 Total: -1.00 -29.45 277.79 -7.50 -36.95 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.64 Total: 4.69 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -3.55 Total: -13.55 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.45 Total: -30.25 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.08 Total: -16.11 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.45 -7.50 -36.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076750607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.807 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds