Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35741 * 116.99715 * 2 1 4 4 C 1.37704 * 120.38399 * 0.02562 * 3 2 1 5 5 C 1.38927 * 121.47125 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.15417 * 179.97438 * 5 4 3 7 7 C 1.36538 * 121.68965 * 359.93225 * 5 4 3 8 8 C 1.39856 * 119.76261 * 0.08963 * 7 5 4 9 9 C 1.41217 * 121.90630 * 179.97438 * 8 7 5 10 10 C 1.35891 * 118.19459 * 179.97438 * 9 8 7 11 11 C 1.41302 * 120.39810 * 359.97438 * 10 9 8 12 12 C 1.41148 * 119.03147 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99490 * 7.38140 * 12 11 10 14 14 C 1.40116 * 120.00262 * 187.38170 * 12 11 10 15 15 N 1.30688 * 119.99924 * 7.35970 * 14 12 11 16 16 Si 1.86805 * 120.00228 * 187.36259 * 14 12 11 17 17 H 1.48499 * 109.46697 * 265.01893 * 16 14 12 18 18 H 1.48498 * 109.46664 * 25.01400 * 16 14 12 19 19 H 1.48493 * 109.47361 * 145.01764 * 16 14 12 20 20 N 1.33065 * 121.94232 * 0.25735 * 11 10 9 21 21 C 1.32862 * 120.95712 * 359.47410 * 20 11 10 22 22 H 1.09003 * 109.47365 * 60.00399 * 1 2 3 23 23 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47105 * 300.00049 * 1 2 3 25 25 H 1.08004 * 119.26263 * 359.97438 * 4 3 2 26 26 H 1.08996 * 109.47278 * 89.99999 * 6 5 4 27 27 H 1.08997 * 109.47214 * 210.00262 * 6 5 4 28 28 H 1.09002 * 109.46985 * 329.99834 * 6 5 4 29 29 H 1.08003 * 120.11816 * 180.02562 * 7 5 4 30 30 H 1.08004 * 120.90281 * 359.97438 * 9 8 7 31 31 H 1.07997 * 119.79782 * 180.02562 * 10 9 8 32 32 H 0.97001 * 120.00145 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3029 2.3693 0.0005 5 6 1.9100 3.6190 0.0000 6 6 1.0470 4.8544 0.0000 7 6 3.2684 3.7565 0.0003 8 6 4.0814 2.6185 -0.0007 9 6 5.4907 2.7080 -0.0010 10 6 6.2074 1.5535 -0.0015 11 6 5.5490 0.3032 -0.0011 12 6 6.3218 -0.8779 -0.0022 13 1 7.3938 -0.8218 0.1169 14 6 5.6984 -2.1230 -0.1578 15 7 4.4250 -2.1847 -0.4452 16 14 6.6872 -3.6947 0.0455 17 1 7.1559 -4.1601 -1.2845 18 1 7.8589 -3.4327 0.9194 19 1 5.8330 -4.7406 0.6632 20 7 4.2219 0.2064 -0.0054 21 6 3.4574 1.2930 0.0002 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2247 2.3061 0.0005 26 1 0.8393 5.1525 1.0277 27 1 1.5683 5.6618 -0.5142 28 1 0.1091 4.6424 -0.5134 29 1 3.7135 4.7405 0.0003 30 1 5.9855 3.6681 -0.0008 31 1 7.2867 1.5918 -0.0012 32 1 3.9934 -3.0467 -0.5533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213489723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = 7.168054 kcal Electronic energy + Delta-G solvation = -16900.421388 eV Core-core repulsion = 14211.956644 eV Total energy + Delta-G solvation = -2688.464743 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.36974 -37.60572 -35.88713 -33.50687 -31.58452 -30.64315 -28.63919 -27.37671 -26.90396 -24.40101 -22.41688 -21.11114 -20.51842 -17.68921 -16.83957 -16.61373 -15.50373 -14.92985 -14.88983 -14.48538 -13.71840 -13.29781 -13.14211 -12.72897 -12.42813 -12.34419 -12.29494 -11.71842 -11.38729 -11.10126 -11.06997 -10.87207 -10.79125 -10.75917 -10.32069 -10.00808 -9.87408 -9.15915 -8.79862 -7.59247 -7.51088 -6.67982 -6.48523 -4.50783 1.78235 2.16130 3.01112 3.06188 3.09785 3.45847 3.89127 4.04086 4.13604 4.83499 5.49458 5.57745 5.64890 5.65605 5.70990 5.84173 5.90708 5.95670 6.05302 6.07449 6.23592 6.29530 6.33757 6.54386 6.65097 6.95058 7.02651 7.12257 7.27122 7.43393 7.57410 7.64972 7.89327 8.04786 8.42174 8.51843 8.78540 10.04888 10.23564 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.007945 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.234152 B = 3523.226577 C = 4500.062829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.283 6.283 3 C 0.113 3.887 4 C -0.200 4.200 5 C -0.140 4.140 6 C -0.095 4.095 7 C -0.095 4.095 8 C -0.181 4.181 9 C -0.075 4.075 10 C -0.201 4.201 11 C 0.243 3.757 12 C -0.410 4.410 13 H 0.087 0.913 14 C 0.062 3.938 15 N -0.687 5.687 16 Si 0.908 3.092 17 H -0.269 1.269 18 H -0.260 1.260 19 H -0.274 1.274 20 N -0.481 5.481 21 C 0.173 3.827 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.043 0.957 25 H 0.109 0.891 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.114 4.563 0.449 6.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.195 6.195 3 C 0.066 3.934 4 C -0.221 4.221 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.114 4.114 8 C -0.187 4.187 9 C -0.098 4.098 10 C -0.223 4.223 11 C 0.112 3.888 12 C -0.441 4.441 13 H 0.105 0.895 14 C -0.166 4.166 15 N -0.307 5.307 16 Si 0.731 3.269 17 H -0.194 1.194 18 H -0.184 1.184 19 H -0.199 1.199 20 N -0.195 5.195 21 C 0.037 3.963 22 H 0.062 0.938 23 H 0.107 0.893 24 H 0.062 0.938 25 H 0.127 0.873 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.588 3.371 0.388 5.707 hybrid contribution 0.512 0.321 0.067 0.608 sum -4.076 3.692 0.455 5.518 Atomic orbital electron populations 1.22898 0.81124 1.02619 1.00103 1.86290 1.18538 1.26480 1.88237 1.18747 0.90422 0.83794 1.00459 1.20476 0.98224 0.91741 1.11672 1.18688 0.93577 0.93452 1.08445 1.20575 0.98421 0.95513 1.00684 1.20301 0.92669 0.96353 1.02050 1.19154 0.93445 0.93011 1.13074 1.20778 0.92510 0.97361 0.99130 1.21781 0.99381 0.94064 1.07047 1.18678 0.89085 0.91367 0.89631 1.19761 0.94814 0.89886 1.39676 0.89480 1.26119 0.95085 1.01042 0.94329 1.70098 1.09692 1.26724 1.24148 0.86307 0.80474 0.80712 0.79383 1.19446 1.18386 1.19910 1.69206 1.03972 1.25354 1.20962 1.19568 0.90901 0.89186 0.96630 0.93750 0.89287 0.93812 0.87295 0.92833 0.92776 0.92987 0.87890 0.87337 0.87582 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.28 -6.58 10.33 -18.93 -0.20 -6.77 16 3 C 0.11 2.69 6.76 -38.55 -0.26 2.43 16 4 C -0.20 -4.05 8.61 -39.52 -0.34 -4.39 16 5 C -0.14 -2.69 5.84 -104.98 -0.61 -3.30 16 6 C -0.10 -1.39 9.96 36.01 0.36 -1.03 16 7 C -0.09 -1.93 9.37 -39.59 -0.37 -2.30 16 8 C -0.18 -4.29 5.88 -104.83 -0.62 -4.90 16 9 C -0.07 -1.65 9.91 -39.29 -0.39 -2.04 16 10 C -0.20 -4.74 9.65 -39.26 -0.38 -5.12 16 11 C 0.24 6.60 6.51 -85.06 -0.55 6.05 16 12 C -0.41 -10.68 9.09 -37.77 -0.34 -11.03 16 13 H 0.09 2.06 7.86 -52.49 -0.41 1.65 16 14 C 0.06 1.56 5.47 -17.33 -0.09 1.47 16 15 N -0.69 -18.43 11.51 55.56 0.64 -17.79 16 16 Si 0.91 18.21 29.57 -169.99 -5.03 13.18 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 N -0.48 -13.75 7.70 -7.68 -0.06 -13.81 16 21 C 0.17 4.57 6.77 -82.87 -0.56 4.01 16 22 H 0.04 0.66 7.66 -51.93 -0.40 0.26 16 23 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 25 H 0.11 1.88 6.23 -52.48 -0.33 1.55 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.71 8.06 -51.93 -0.42 0.30 16 28 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.11 1.98 8.06 -52.48 -0.42 1.56 16 31 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 32 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 LS Contribution 278.36 15.07 4.19 4.19 Total: -1.00 -30.57 278.36 -7.24 -37.82 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.62 Total: 1.88 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -3.17 Total: -18.70 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.58 Total: -31.60 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.20 Total: -6.77 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.57 -7.24 -37.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213489723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.983 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds