Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35741 * 116.99715 * 2 1 4 4 C 1.37704 * 120.38399 * 0.02562 * 3 2 1 5 5 C 1.38927 * 121.47125 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.15417 * 179.97438 * 5 4 3 7 7 C 1.36538 * 121.68965 * 359.93225 * 5 4 3 8 8 C 1.39856 * 119.76261 * 0.08963 * 7 5 4 9 9 C 1.41217 * 121.90630 * 179.97438 * 8 7 5 10 10 C 1.35891 * 118.19459 * 179.97438 * 9 8 7 11 11 C 1.41302 * 120.39810 * 359.97438 * 10 9 8 12 12 C 1.41148 * 119.03147 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99490 * 7.38140 * 12 11 10 14 14 C 1.40116 * 120.00262 * 187.38170 * 12 11 10 15 15 N 1.30688 * 119.99924 * 7.35970 * 14 12 11 16 16 Si 1.86805 * 120.00228 * 187.36259 * 14 12 11 17 17 H 1.48499 * 109.46697 * 265.01893 * 16 14 12 18 18 H 1.48498 * 109.46664 * 25.01400 * 16 14 12 19 19 H 1.48493 * 109.47361 * 145.01764 * 16 14 12 20 20 N 1.33065 * 121.94232 * 0.25735 * 11 10 9 21 21 C 1.32862 * 120.95712 * 359.47410 * 20 11 10 22 22 H 1.09003 * 109.47365 * 60.00399 * 1 2 3 23 23 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47105 * 300.00049 * 1 2 3 25 25 H 1.08004 * 119.26263 * 359.97438 * 4 3 2 26 26 H 1.08996 * 109.47278 * 89.99999 * 6 5 4 27 27 H 1.08997 * 109.47214 * 210.00262 * 6 5 4 28 28 H 1.09002 * 109.46985 * 329.99834 * 6 5 4 29 29 H 1.08003 * 120.11816 * 180.02562 * 7 5 4 30 30 H 1.08004 * 120.90281 * 359.97438 * 9 8 7 31 31 H 1.07997 * 119.79782 * 180.02562 * 10 9 8 32 32 H 0.97001 * 120.00145 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3029 2.3693 0.0005 5 6 1.9100 3.6190 0.0000 6 6 1.0470 4.8544 0.0000 7 6 3.2684 3.7565 0.0003 8 6 4.0814 2.6185 -0.0007 9 6 5.4907 2.7080 -0.0010 10 6 6.2074 1.5535 -0.0015 11 6 5.5490 0.3032 -0.0011 12 6 6.3218 -0.8779 -0.0022 13 1 7.3938 -0.8218 0.1169 14 6 5.6984 -2.1230 -0.1578 15 7 4.4250 -2.1847 -0.4452 16 14 6.6872 -3.6947 0.0455 17 1 7.1559 -4.1601 -1.2845 18 1 7.8589 -3.4327 0.9194 19 1 5.8330 -4.7406 0.6632 20 7 4.2219 0.2064 -0.0054 21 6 3.4574 1.2930 0.0002 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2247 2.3061 0.0005 26 1 0.8393 5.1525 1.0277 27 1 1.5683 5.6618 -0.5142 28 1 0.1091 4.6424 -0.5134 29 1 3.7135 4.7405 0.0003 30 1 5.9855 3.6681 -0.0008 31 1 7.2867 1.5918 -0.0012 32 1 3.9934 -3.0467 -0.5533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213489723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = -11.494303 kcal Electronic energy + Delta-G solvation = -16901.230648 eV Core-core repulsion = 14211.956644 eV Total energy + Delta-G solvation = -2689.274004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06259 -39.30950 -37.52917 -35.29804 -33.34361 -32.30952 -30.30513 -29.02643 -28.32190 -26.02619 -24.15793 -22.83470 -22.18754 -19.47696 -18.59601 -18.20793 -17.19694 -16.57184 -16.45379 -16.20697 -15.33256 -14.94795 -14.58859 -14.27146 -14.01115 -13.90513 -13.81424 -13.07606 -12.97977 -12.75977 -12.60812 -12.57157 -12.35383 -12.24838 -11.92787 -11.62468 -11.51422 -10.89703 -10.57410 -9.45036 -9.28361 -8.38665 -8.30529 -6.42542 0.07277 0.40344 1.40053 1.44111 1.55884 1.69381 2.21705 2.33126 2.63487 3.04036 3.95064 3.96127 4.06158 4.25749 4.37620 4.42663 4.42888 4.51487 4.63645 4.70222 4.72072 4.85517 4.98347 5.01674 5.14856 5.18040 5.34013 5.44010 5.54327 5.76354 5.88127 5.95998 6.13422 6.29568 6.67361 6.79996 6.92504 8.20846 8.44037 Molecular weight = 243.10amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.007945 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.234152 B = 3523.226577 C = 4500.062829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.324 6.324 3 C 0.085 3.915 4 C -0.192 4.192 5 C -0.129 4.129 6 C -0.093 4.093 7 C -0.105 4.105 8 C -0.195 4.195 9 C -0.070 4.070 10 C -0.219 4.219 11 C 0.209 3.791 12 C -0.450 4.450 13 H 0.099 0.901 14 C 0.017 3.983 15 N -0.739 5.739 16 Si 0.989 3.011 17 H -0.261 1.261 18 H -0.251 1.251 19 H -0.273 1.273 20 N -0.521 5.521 21 C 0.119 3.881 22 H 0.061 0.939 23 H 0.107 0.893 24 H 0.061 0.939 25 H 0.142 0.858 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.152 0.848 31 H 0.128 0.872 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 6.706 0.616 8.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.238 6.238 3 C 0.038 3.962 4 C -0.212 4.212 5 C -0.130 4.130 6 C -0.149 4.149 7 C -0.124 4.124 8 C -0.200 4.200 9 C -0.093 4.093 10 C -0.241 4.241 11 C 0.077 3.923 12 C -0.482 4.482 13 H 0.117 0.883 14 C -0.206 4.206 15 N -0.360 5.360 16 Si 0.809 3.191 17 H -0.185 1.185 18 H -0.174 1.174 19 H -0.197 1.197 20 N -0.236 5.236 21 C -0.014 4.014 22 H 0.079 0.921 23 H 0.125 0.875 24 H 0.080 0.920 25 H 0.160 0.840 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.170 0.830 31 H 0.146 0.854 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.447 5.561 0.555 7.804 hybrid contribution 0.541 -0.086 0.017 0.548 sum -4.906 5.476 0.572 7.374 Atomic orbital electron populations 1.23223 0.77990 1.04509 1.01651 1.86219 1.21968 1.27058 1.88521 1.19061 0.90192 0.85173 1.01768 1.20923 0.99773 0.91054 1.09498 1.19360 0.94035 0.94932 1.04680 1.20656 0.98383 0.93451 1.02447 1.20694 0.93136 0.96730 1.01796 1.19614 0.94724 0.93197 1.12446 1.21247 0.92145 0.98643 0.97226 1.21974 1.00610 0.93616 1.07913 1.19236 0.89442 0.93324 0.90336 1.20134 0.95485 0.90709 1.41880 0.88330 1.27107 0.95974 1.04449 0.93093 1.70252 1.11816 1.27506 1.26441 0.85097 0.78724 0.75663 0.79618 1.18519 1.17408 1.19734 1.69130 1.04902 1.27197 1.22357 1.20252 0.92420 0.90227 0.98511 0.92083 0.87512 0.92003 0.84045 0.90961 0.90833 0.91214 0.84320 0.83006 0.85417 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.78 16 2 O -0.32 -15.52 10.33 -90.65 -0.94 -16.46 16 3 C 0.08 4.11 6.76 22.94 0.15 4.26 16 4 C -0.19 -7.37 8.61 22.31 0.19 -7.18 16 5 C -0.13 -4.49 5.84 -20.10 -0.12 -4.61 16 6 C -0.09 -2.21 9.96 71.24 0.71 -1.50 16 7 C -0.10 -3.97 9.37 22.26 0.21 -3.77 16 8 C -0.19 -9.13 5.88 -20.00 -0.12 -9.25 16 9 C -0.07 -3.03 9.91 22.46 0.22 -2.80 16 10 C -0.22 -10.60 9.65 22.48 0.22 -10.39 16 11 C 0.21 11.94 6.51 40.42 0.26 12.21 16 12 C -0.45 -24.66 9.09 23.44 0.21 -24.45 16 13 H 0.10 4.87 7.86 -2.91 -0.02 4.85 16 14 C 0.02 0.89 5.47 85.32 0.47 1.35 16 15 N -0.74 -42.15 11.51 21.85 0.25 -41.89 16 16 Si 0.99 38.79 29.57 68.60 2.03 40.81 16 17 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 18 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 19 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 20 N -0.52 -31.49 7.70 -178.22 -1.37 -32.86 16 21 C 0.12 6.49 6.77 41.94 0.28 6.78 16 22 H 0.06 1.70 7.66 -2.39 -0.02 1.68 16 23 H 0.11 2.93 8.14 -2.38 -0.02 2.91 16 24 H 0.06 1.71 7.66 -2.38 -0.02 1.69 16 25 H 0.14 4.38 6.23 -2.91 -0.02 4.36 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 28 H 0.07 1.45 8.07 -2.39 -0.02 1.43 16 29 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.15 5.10 8.06 -2.91 -0.02 5.07 16 31 H 0.13 5.36 8.06 -2.91 -0.02 5.34 16 32 H 0.28 14.46 8.29 -92.71 -0.77 13.70 16 Total: -1.00 -71.99 278.36 4.91 -67.09 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.13 Total: 20.87 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 3.81 Total: -37.56 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -1.12 Total: -74.75 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.94 Total: -16.46 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.81 kcal Total: -71.99 4.91 -67.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213489723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.594 kcal (2) G-P(sol) polarization free energy of solvation -71.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds