Wall clock time and date at job start Mon Mar 30 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48498 * 109.47028 * 239.99814 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99423 * 3 2 1 7 7 C 1.37884 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46923 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47473 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47378 * 179.97438 * 12 11 10 14 14 C 1.47239 * 111.00019 * 170.00176 * 13 12 11 15 15 C 1.53085 * 108.47993 * 54.53791 * 14 13 12 16 16 C 1.50315 * 109.71206 * 48.98551 * 15 14 13 17 17 C 1.29990 * 122.87162 * 343.50020 * 16 15 14 18 18 Cl 1.73607 * 118.36691 * 180.36466 * 17 16 15 19 19 C 1.46836 * 111.00033 * 292.94170 * 13 12 11 20 20 H 0.96996 * 119.99725 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47390 * 59.99759 * 9 7 2 22 22 H 1.09000 * 109.47165 * 299.99889 * 9 7 2 23 23 H 1.08996 * 109.47407 * 59.99619 * 10 9 7 24 24 H 1.09000 * 109.46986 * 299.99847 * 10 9 7 25 25 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 26 26 H 1.09004 * 109.47368 * 299.99812 * 11 10 9 27 27 H 1.09004 * 109.46862 * 59.99962 * 12 11 10 28 28 H 1.09000 * 109.47250 * 299.99985 * 12 11 10 29 29 H 1.09001 * 109.63688 * 174.23881 * 14 13 12 30 30 H 1.08999 * 109.63841 * 294.84350 * 14 13 12 31 31 H 1.08994 * 109.43302 * 169.06449 * 15 14 13 32 32 H 1.09001 * 109.43288 * 288.96682 * 15 14 13 33 33 H 1.08007 * 118.56149 * 163.52051 * 16 15 14 34 34 H 1.09000 * 109.33808 * 47.80097 * 19 13 12 35 35 H 1.09003 * 109.33718 * 167.31648 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7399 -7.4223 0.0018 14 6 2.6486 -8.5561 -0.2362 15 6 3.7760 -8.4998 0.7978 16 6 3.1949 -8.3190 2.1722 17 6 1.9739 -7.9221 2.3753 18 17 1.4263 -7.7437 4.0131 19 6 1.0136 -7.6105 1.2640 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8713 -3.6040 0.8922 24 1 2.8726 -3.6048 -0.8877 25 1 0.8546 -5.0450 -0.8895 26 1 0.8526 -5.0448 0.8905 27 1 3.1005 -6.0923 0.8923 28 1 3.1018 -6.0922 -0.8877 29 1 2.1011 -9.4927 -0.1306 30 1 3.0681 -8.4850 -1.2397 31 1 4.3456 -9.4285 0.7641 32 1 4.4350 -7.6618 0.5705 33 1 3.8194 -8.5277 3.0284 34 1 0.4663 -6.6992 1.5049 35 1 0.3081 -8.4343 1.1550 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404396537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:29 Heat of formation + Delta-G solvation = -10.880351 kcal Electronic energy + Delta-G solvation = -15335.574584 eV Core-core repulsion = 12779.727448 eV Total energy + Delta-G solvation = -2555.847136 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83717 -36.57781 -34.89624 -33.00566 -31.72497 -30.91574 -28.65432 -25.55116 -24.05050 -22.85233 -21.36064 -20.02269 -17.80076 -16.85309 -16.17846 -15.63545 -15.09355 -14.76584 -14.39143 -14.24223 -13.62149 -13.03213 -12.70640 -12.45117 -12.11173 -11.92722 -11.80390 -11.51527 -11.28774 -11.14162 -10.98443 -10.90933 -10.48953 -10.44575 -10.33670 -9.58879 -9.23547 -9.00798 -8.98880 -8.42546 -8.29528 -5.94881 -3.97054 1.70409 2.12484 3.36075 3.40245 3.42770 3.85156 4.49851 4.54512 4.71968 4.86553 4.96296 5.12621 5.32495 5.37782 5.40684 5.50438 5.61408 5.70148 5.76786 5.91036 5.98993 6.13906 6.21153 6.31438 6.52938 6.80813 6.94646 6.96761 7.03061 7.24223 7.73801 7.90188 8.06224 8.48991 9.10176 9.66561 11.16466 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.030425 B = 0.004510 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.074088 B = 6206.636708 C = 6601.671233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.114 4.114 12 C 0.048 3.952 13 N -0.519 5.519 14 C 0.046 3.954 15 C -0.121 4.121 16 C -0.151 4.151 17 C -0.091 4.091 18 Cl -0.093 7.093 19 C 0.084 3.916 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 -19.446 2.707 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.152 4.152 12 C -0.080 4.080 13 N -0.241 5.241 14 C -0.082 4.082 15 C -0.160 4.160 16 C -0.171 4.171 17 C -0.119 4.119 18 Cl -0.065 7.065 19 C -0.044 4.044 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.598 -19.285 2.434 19.974 hybrid contribution 1.117 0.933 1.010 1.772 sum 5.715 -18.351 3.445 19.527 Atomic orbital electron populations 1.69957 1.06037 1.26606 1.50945 1.25025 0.94831 0.99176 0.95422 0.86679 0.79601 0.83271 0.78567 1.20274 1.21295 1.20303 1.21250 0.92952 0.91240 1.50450 0.92868 1.19079 0.94009 0.91289 0.97153 1.21584 0.99093 0.93957 1.00002 1.21686 0.97871 0.93624 1.02038 1.22365 0.96375 0.88330 1.00894 1.62881 1.28251 1.02770 1.30169 1.22364 0.92556 0.94633 0.98676 1.21147 0.99592 1.03201 0.92024 1.22304 0.95060 1.00283 0.99406 1.23578 0.97668 1.04008 0.86617 1.98377 1.90625 1.96297 1.21214 1.21353 0.94816 1.03852 0.84420 0.93006 0.96597 0.96738 0.93731 0.93492 0.91597 0.92561 0.94280 0.90741 0.90375 0.89660 0.89941 0.89740 0.86516 0.87973 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.11 -1.97 5.19 -26.74 -0.14 -2.11 16 12 C 0.05 0.66 4.03 -3.82 -0.02 0.65 16 13 N -0.52 -6.37 5.02 -236.11 -1.19 -7.56 16 14 C 0.05 0.44 6.02 -3.59 -0.02 0.42 16 15 C -0.12 -1.08 5.54 -28.03 -0.16 -1.24 16 16 C -0.15 -1.59 8.96 -35.93 -0.32 -1.92 16 17 C -0.09 -1.06 5.77 -36.01 -0.21 -1.27 16 18 Cl -0.09 -1.14 28.81 -51.86 -1.49 -2.63 16 19 C 0.08 1.00 5.64 -5.28 -0.03 0.97 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.06 0.98 6.36 -51.93 -0.33 0.65 16 27 H 0.04 0.56 6.04 -51.93 -0.31 0.25 16 28 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 29 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.80 7.15 -51.93 -0.37 0.43 16 33 H 0.12 1.15 7.99 -52.48 -0.42 0.73 16 34 H 0.10 1.36 6.06 -51.93 -0.31 1.04 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 294.77 15.07 4.44 4.44 Total: -1.00 -30.36 294.77 -9.61 -39.97 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -5.51 Total: -4.21 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -1.58 Total: -20.29 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.45 Total: -34.27 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.49 Total: -2.63 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.36 -9.61 -39.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404396537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.094 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds