Wall clock time and date at job start Mon Mar 30 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48498 * 109.47028 * 239.99814 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99423 * 3 2 1 7 7 C 1.37884 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46923 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47473 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47378 * 179.97438 * 12 11 10 14 14 C 1.47239 * 111.00019 * 170.00176 * 13 12 11 15 15 C 1.53085 * 108.47993 * 54.53791 * 14 13 12 16 16 C 1.50315 * 109.71206 * 48.98551 * 15 14 13 17 17 C 1.29990 * 122.87162 * 343.50020 * 16 15 14 18 18 Cl 1.73607 * 118.36691 * 180.36466 * 17 16 15 19 19 C 1.46836 * 111.00033 * 292.94170 * 13 12 11 20 20 H 0.96996 * 119.99725 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47390 * 59.99759 * 9 7 2 22 22 H 1.09000 * 109.47165 * 299.99889 * 9 7 2 23 23 H 1.08996 * 109.47407 * 59.99619 * 10 9 7 24 24 H 1.09000 * 109.46986 * 299.99847 * 10 9 7 25 25 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 26 26 H 1.09004 * 109.47368 * 299.99812 * 11 10 9 27 27 H 1.09004 * 109.46862 * 59.99962 * 12 11 10 28 28 H 1.09000 * 109.47250 * 299.99985 * 12 11 10 29 29 H 1.09001 * 109.63688 * 174.23881 * 14 13 12 30 30 H 1.08999 * 109.63841 * 294.84350 * 14 13 12 31 31 H 1.08994 * 109.43302 * 169.06449 * 15 14 13 32 32 H 1.09001 * 109.43288 * 288.96682 * 15 14 13 33 33 H 1.08007 * 118.56149 * 163.52051 * 16 15 14 34 34 H 1.09000 * 109.33808 * 47.80097 * 19 13 12 35 35 H 1.09003 * 109.33718 * 167.31648 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7399 -7.4223 0.0018 14 6 2.6486 -8.5561 -0.2362 15 6 3.7760 -8.4998 0.7978 16 6 3.1949 -8.3190 2.1722 17 6 1.9739 -7.9221 2.3753 18 17 1.4263 -7.7437 4.0131 19 6 1.0136 -7.6105 1.2640 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8713 -3.6040 0.8922 24 1 2.8726 -3.6048 -0.8877 25 1 0.8546 -5.0450 -0.8895 26 1 0.8526 -5.0448 0.8905 27 1 3.1005 -6.0923 0.8923 28 1 3.1018 -6.0922 -0.8877 29 1 2.1011 -9.4927 -0.1306 30 1 3.0681 -8.4850 -1.2397 31 1 4.3456 -9.4285 0.7641 32 1 4.4350 -7.6618 0.5705 33 1 3.8194 -8.5277 3.0284 34 1 0.4663 -6.6992 1.5049 35 1 0.3081 -8.4343 1.1550 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404396537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:29 Heat of formation + Delta-G solvation = -28.852317 kcal Electronic energy + Delta-G solvation = -15336.353906 eV Core-core repulsion = 12779.727448 eV Total energy + Delta-G solvation = -2556.626459 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.74351 -37.51370 -36.53692 -34.69844 -33.16761 -31.73803 -30.29218 -27.11508 -25.25089 -24.02492 -22.65493 -21.74758 -18.76860 -18.35563 -17.70194 -16.76720 -16.52840 -16.07205 -15.79364 -15.20705 -14.78198 -14.48316 -13.97613 -13.68386 -13.60539 -13.30710 -13.08639 -12.77415 -12.69173 -12.47119 -12.31256 -12.25303 -11.98055 -11.90400 -11.73178 -11.32452 -11.26576 -10.98635 -10.54114 -9.86097 -9.35740 -8.18852 -6.30482 0.85900 1.25029 1.39817 1.43331 1.51256 2.41579 2.91991 3.13825 3.67177 3.96895 3.99277 4.11047 4.18419 4.26127 4.45696 4.53977 4.57582 4.63088 4.77815 4.85570 4.91781 4.98221 5.02224 5.17954 5.26416 5.28073 5.37190 5.46742 5.55725 5.78307 5.87508 5.98830 6.06428 6.26779 6.86882 7.38790 8.92909 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.030425 B = 0.004510 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.074088 B = 6206.636708 C = 6601.671233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.095 4.095 11 C -0.105 4.105 12 C 0.061 3.939 13 N -0.528 5.528 14 C 0.045 3.955 15 C -0.118 4.118 16 C -0.142 4.142 17 C -0.109 4.109 18 Cl -0.105 7.105 19 C 0.086 3.914 20 H 0.263 0.737 21 H -0.010 1.010 22 H -0.014 1.014 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.062 -20.196 2.300 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.133 4.133 11 C -0.143 4.143 12 C -0.067 4.067 13 N -0.250 5.250 14 C -0.083 4.083 15 C -0.157 4.157 16 C -0.161 4.161 17 C -0.137 4.137 18 Cl -0.077 7.077 19 C -0.043 4.043 20 H 0.072 0.928 21 H 0.009 0.991 22 H 0.004 0.996 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.142 0.858 34 H 0.099 0.901 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.506 -20.058 2.027 21.184 hybrid contribution 0.501 1.122 1.130 1.670 sum 7.007 -18.936 3.157 20.436 Atomic orbital electron populations 1.70101 1.07878 1.27813 1.51688 1.26014 0.95772 1.03443 0.94703 0.85497 0.78285 0.78026 0.79224 1.18982 1.20783 1.19228 1.21715 0.93553 0.92520 1.50572 0.92181 1.19009 0.94502 0.93328 0.94518 1.21377 0.97933 0.93649 1.00343 1.21514 0.98123 0.93392 1.01286 1.22111 0.95226 0.87995 1.01332 1.62827 1.28936 1.02922 1.30280 1.22493 0.92408 0.93803 0.99551 1.21197 0.99401 1.04509 0.90561 1.22581 0.94464 0.98390 1.00664 1.23575 0.98300 1.05845 0.86001 1.98370 1.90848 1.96470 1.22014 1.21281 0.95027 1.03325 0.84629 0.92788 0.99117 0.99562 0.93585 0.92713 0.92349 0.93430 0.94454 0.89591 0.89161 0.88361 0.87303 0.89772 0.85841 0.90051 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.97 5.15 30.59 0.16 -3.81 16 11 C -0.11 -3.63 5.19 30.59 0.16 -3.47 16 12 C 0.06 1.61 4.03 86.30 0.35 1.96 16 13 N -0.53 -12.06 5.02 -900.93 -4.53 -16.58 16 14 C 0.04 0.72 6.02 86.27 0.52 1.24 16 15 C -0.12 -1.74 5.54 29.76 0.16 -1.57 16 16 C -0.14 -2.67 8.96 26.57 0.24 -2.44 16 17 C -0.11 -2.43 5.77 26.52 0.15 -2.27 16 18 Cl -0.11 -2.52 28.81 -2.72 -0.08 -2.60 16 19 C 0.09 1.98 5.64 85.40 0.48 2.46 16 20 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 21 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 22 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.05 1.71 6.36 -2.39 -0.02 1.70 16 27 H 0.04 1.01 6.04 -2.38 -0.01 0.99 16 28 H 0.09 2.09 8.08 -2.39 -0.02 2.07 16 29 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.31 7.15 -2.39 -0.02 1.30 16 33 H 0.12 2.16 7.99 -2.91 -0.02 2.14 16 34 H 0.08 2.20 6.06 -2.39 -0.01 2.19 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -65.51 294.77 1.82 -63.69 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.05 Total: 4.33 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 3.06 Total: -37.81 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -4.24 Total: -74.61 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.08 Total: -2.60 kcal Total: -65.51 1.82 -63.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404396537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.841 kcal (2) G-P(sol) polarization free energy of solvation -65.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds