Wall clock time and date at job start Mon Mar 30 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99882 * 2 1 4 4 H 1.48503 * 109.47230 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46789 * 120.00330 * 3 2 1 6 6 H 1.48490 * 109.47431 * 240.00118 * 3 2 1 7 7 C 1.37870 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00147 * 183.65675 * 7 2 1 9 9 C 1.50699 * 119.99976 * 3.64875 * 7 2 1 10 10 C 1.54880 * 119.96572 * 69.37148 * 9 7 2 11 11 C 1.55144 * 82.05837 * 161.39052 * 10 9 7 12 12 C 1.55708 * 119.19471 * 167.91193 * 9 7 2 13 13 C 1.56745 * 101.83164 * 63.41716 * 11 10 9 14 14 N 1.49610 * 99.23154 * 316.68842 * 13 11 10 15 15 C 1.46903 * 110.99743 * 242.11426 * 14 13 11 16 16 C 1.50700 * 109.47035 * 295.32184 * 15 14 13 17 17 C 1.38240 * 120.00202 * 269.73090 * 16 15 14 18 18 C 1.38234 * 119.99873 * 179.76436 * 17 16 15 19 19 C 1.38234 * 119.99873 * 0.50730 * 18 17 16 20 20 C 1.38228 * 120.00226 * 359.74561 * 19 18 17 21 21 C 1.38234 * 119.99683 * 90.00256 * 16 15 14 22 22 H 0.96996 * 119.99651 * 174.12930 * 1 2 3 23 23 H 1.08999 * 114.44157 * 274.05805 * 10 9 7 24 24 H 1.09000 * 114.44258 * 47.46828 * 10 9 7 25 25 H 1.09002 * 120.98997 * 197.31641 * 11 10 9 26 26 H 1.09003 * 114.52122 * 311.83052 * 12 9 7 27 27 H 1.08999 * 114.52014 * 85.50380 * 12 9 7 28 28 H 1.08996 * 111.44661 * 199.18883 * 13 11 10 29 29 H 1.09000 * 111.44665 * 74.19233 * 13 11 10 30 30 H 1.09000 * 109.47352 * 55.32417 * 15 14 13 31 31 H 1.09008 * 109.46684 * 175.32778 * 15 14 13 32 32 H 1.08001 * 119.99403 * 0.02562 * 17 16 15 33 33 H 1.07998 * 119.99780 * 180.23098 * 18 17 16 34 34 H 1.08002 * 119.99477 * 179.72160 * 19 18 17 35 35 H 1.08005 * 120.00274 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.00348 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0830 -1.1949 0.0591 9 6 1.2534 -2.4977 -0.0842 10 6 0.5281 -2.8899 -1.3952 11 6 0.5904 -4.3014 -0.7543 12 6 2.0405 -3.8108 -0.3684 13 6 -0.2877 -4.1102 0.5300 14 7 0.2314 -2.7811 0.9799 15 6 0.8627 -2.8828 2.3025 16 6 -0.1759 -3.2600 3.3272 17 6 -0.8748 -2.2741 3.9984 18 6 -1.8309 -2.6203 4.9348 19 6 -2.0807 -3.9523 5.2076 20 6 -1.3782 -4.9381 4.5402 21 6 -0.4257 -4.5920 3.6000 22 1 -0.4849 -0.8356 -0.0859 23 1 -0.4824 -2.4918 -1.4880 24 1 1.1279 -2.7663 -2.2969 25 1 0.4417 -5.1980 -1.3559 26 1 2.7395 -3.7478 -1.2024 27 1 2.4613 -4.2867 0.5173 28 1 -0.0880 -4.8866 1.2685 29 1 -1.3484 -4.0612 0.2840 30 1 1.6409 -3.6455 2.2760 31 1 1.3041 -1.9224 2.5692 32 1 -0.6767 -1.2335 3.7881 33 1 -2.3795 -1.8501 5.4565 34 1 -2.8246 -4.2226 5.9425 35 1 -1.5731 -5.9787 4.7536 36 1 0.1236 -5.3622 3.0791 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036373134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:29 Heat of formation + Delta-G solvation = 87.707566 kcal Electronic energy + Delta-G solvation = -17708.261579 eV Core-core repulsion = 15159.122385 eV Total energy + Delta-G solvation = -2549.139194 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27225 -38.63777 -33.26745 -32.45964 -30.57581 -29.65491 -27.46049 -25.00736 -24.20187 -23.57592 -22.20881 -20.81009 -19.35033 -18.67166 -16.85167 -16.30629 -15.02631 -14.84532 -14.57525 -14.04582 -13.68360 -13.52968 -13.04198 -12.72329 -12.48417 -12.41184 -11.96524 -11.39745 -11.18837 -10.96617 -10.79993 -10.65566 -10.57291 -10.34306 -10.07019 -9.94182 -9.67035 -9.14630 -8.57046 -8.44262 -8.44020 -8.26578 -7.38785 -6.20994 -4.02999 1.70326 1.75141 3.46218 3.47017 3.66081 4.11876 4.56205 4.95281 5.11334 5.18050 5.22335 5.30436 5.41592 5.46123 5.51888 5.71340 5.84109 5.87149 6.05181 6.09234 6.11934 6.25826 6.29951 6.42249 6.53203 6.57639 6.59399 6.70413 6.76757 6.82764 6.90160 7.04331 7.12154 7.22270 7.36456 7.78523 7.87264 8.44261 8.50215 9.02537 9.78634 11.19125 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.008702 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.715367 B = 3216.716674 C = 4082.824695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.038 3.962 3 Si 1.061 2.939 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.585 4.585 8 H 0.052 0.948 9 C 0.204 3.796 10 C -0.140 4.140 11 C -0.163 4.163 12 C -0.162 4.162 13 C 0.029 3.971 14 N -0.473 5.473 15 C 0.090 3.910 16 C -0.061 4.061 17 C -0.096 4.096 18 C -0.123 4.123 19 C -0.133 4.133 20 C -0.127 4.127 21 C -0.120 4.120 22 H 0.294 0.706 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 -7.692 6.073 9.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.173 4.173 3 Si 0.890 3.110 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.624 4.624 8 H 0.071 0.929 9 C 0.118 3.882 10 C -0.179 4.179 11 C -0.182 4.182 12 C -0.201 4.201 13 C -0.099 4.099 14 N -0.196 5.196 15 C -0.038 4.038 16 C -0.062 4.062 17 C -0.114 4.114 18 C -0.141 4.141 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.139 4.139 22 H 0.107 0.893 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.166 -5.591 6.219 8.639 hybrid contribution 0.772 -2.507 -0.185 2.630 sum -1.394 -8.098 6.034 10.195 Atomic orbital electron populations 1.70538 1.06729 1.33563 1.41089 1.25636 0.96639 1.01773 0.93208 0.83681 0.75008 0.75884 0.76456 1.20840 1.21607 1.21530 1.21191 0.93246 0.89484 1.58437 0.92945 1.21549 0.87548 0.92148 0.86992 1.23838 1.00609 0.94119 0.99346 1.25012 0.96787 0.97796 0.98562 1.24660 0.94434 1.01222 0.99806 1.23743 0.98514 0.92820 0.94799 1.67192 1.29969 1.21967 1.00476 1.21010 0.92395 1.01284 0.89071 1.20092 0.97248 0.92819 0.96038 1.21163 0.95245 0.99907 0.95101 1.21122 0.98372 0.96063 0.98590 1.21011 1.00324 0.93212 1.00597 1.21006 0.97228 0.98814 0.97423 1.21076 0.98788 0.95801 0.98232 0.89309 0.92619 0.91039 0.89741 0.90094 0.93779 0.92950 0.91057 0.95216 0.89273 0.85647 0.86504 0.86805 0.86781 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.59 55.43 0.75 -25.20 16 2 C 0.04 1.05 5.46 -17.82 -0.10 0.96 16 3 Si 1.06 24.53 29.91 -169.99 -5.08 19.45 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.59 -15.89 8.75 -34.44 -0.30 -16.19 16 8 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 9 C 0.20 4.96 0.66 -134.42 -0.09 4.87 16 10 C -0.14 -3.21 6.93 -28.77 -0.20 -3.41 16 11 C -0.16 -3.21 6.45 -90.77 -0.59 -3.79 16 12 C -0.16 -3.42 7.48 -26.78 -0.20 -3.62 16 13 C 0.03 0.59 6.35 -0.29 0.00 0.59 16 14 N -0.47 -10.80 4.42 -218.41 -0.96 -11.76 16 15 C 0.09 1.91 4.73 -4.97 -0.02 1.88 16 16 C -0.06 -1.14 5.01 -104.62 -0.52 -1.66 16 17 C -0.10 -1.71 9.70 -39.58 -0.38 -2.10 16 18 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 19 C -0.13 -1.85 10.05 -39.59 -0.40 -2.24 16 20 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 21 C -0.12 -1.94 8.46 -39.58 -0.33 -2.28 16 22 H 0.29 8.65 5.60 -40.82 -0.23 8.42 16 23 H 0.06 1.35 7.51 -51.93 -0.39 0.96 16 24 H 0.07 1.60 7.92 -51.93 -0.41 1.19 16 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.08 1.66 7.93 -51.93 -0.41 1.25 16 27 H 0.04 0.90 7.02 -51.93 -0.36 0.54 16 28 H 0.05 0.95 5.20 -51.93 -0.27 0.68 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.03 0.61 6.78 -51.93 -0.35 0.26 16 31 H 0.09 2.08 7.77 -51.92 -0.40 1.67 16 32 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.11 1.72 6.89 -52.49 -0.36 1.36 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -28.96 288.28 -9.82 -38.78 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.94 Total: 5.86 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: -3.93 Total: -31.47 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.21 Total: -36.96 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.96 -9.82 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036373134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.492 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds