Wall clock time and date at job start Mon Mar 30 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36830 * 125.03503 * 2 1 4 4 H 0.96995 * 125.06810 * 359.96774 * 3 2 1 5 5 C 1.37687 * 109.87239 * 179.97438 * 3 2 1 6 6 C 1.39134 * 133.51079 * 180.34235 * 5 3 2 7 7 C 1.37742 * 119.77921 * 180.13839 * 6 5 3 8 8 C 1.50706 * 119.66531 * 179.77629 * 7 6 5 9 9 C 1.38830 * 120.67022 * 359.49529 * 7 6 5 10 10 C 1.50698 * 119.73895 * 180.25394 * 9 7 6 11 11 C 1.36628 * 120.52424 * 0.23340 * 9 7 6 12 12 C 1.39624 * 119.76753 * 0.02562 * 11 9 7 13 13 C 1.34236 * 125.03346 * 179.97438 * 2 1 3 14 14 C 1.50698 * 126.50341 * 0.02710 * 13 2 1 15 15 C 1.50706 * 109.46998 * 269.99739 * 14 13 2 16 16 H 1.07998 * 119.99747 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99782 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99547 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00337 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47395 * 89.99966 * 19 17 15 21 21 H 1.48506 * 109.46993 * 210.00005 * 19 17 15 22 22 H 1.48508 * 109.46799 * 329.99697 * 19 17 15 23 23 H 1.09001 * 109.46945 * 89.97609 * 1 2 3 24 24 H 1.08996 * 109.47033 * 209.98039 * 1 2 3 25 25 H 1.09001 * 109.46536 * 329.98209 * 1 2 3 26 26 H 1.07998 * 120.10683 * 359.89114 * 6 5 3 27 27 H 1.09001 * 109.46953 * 269.72295 * 8 7 6 28 28 H 1.09000 * 109.47318 * 29.71893 * 8 7 6 29 29 H 1.09000 * 109.47161 * 149.72523 * 8 7 6 30 30 H 1.08999 * 109.47235 * 90.00213 * 10 9 7 31 31 H 1.09001 * 109.47631 * 210.00217 * 10 9 7 32 32 H 1.09001 * 109.47072 * 330.00369 * 10 9 7 33 33 H 1.08000 * 120.11461 * 180.02562 * 11 9 7 34 34 H 1.09000 * 109.47371 * 29.99226 * 14 13 2 35 35 H 1.09004 * 109.47502 * 149.99899 * 14 13 2 36 36 H 0.97001 * 120.00006 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9624 2.0324 -0.0004 5 6 3.6215 0.7602 0.0006 6 6 4.8100 1.4836 0.0069 7 6 6.0159 0.8181 0.0026 8 6 7.3017 1.6042 0.0043 9 6 6.0590 -0.5696 0.0027 10 6 7.3900 -1.2762 0.0038 11 6 4.9041 -1.2997 0.0021 12 6 3.6705 -0.6457 0.0010 13 6 2.2776 -1.0991 0.0005 14 6 1.8003 -2.5286 0.0006 15 6 1.6408 -3.0048 1.4215 16 1 1.8632 -2.3391 2.2423 17 6 1.2109 -4.2904 1.6734 18 7 1.0721 -4.7061 2.9134 19 14 0.8269 -5.4420 0.2537 20 1 2.0530 -6.1911 -0.1216 21 1 -0.2314 -6.3992 0.6651 22 1 0.3538 -4.6514 -0.9109 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3632 0.8899 0.5141 26 1 4.7870 2.5633 0.0110 27 1 7.6130 1.7937 -1.0229 28 1 7.1468 2.5530 0.5179 29 1 8.0753 1.0344 0.5191 30 1 7.7101 -1.4466 1.0317 31 1 7.2942 -2.2326 -0.5101 32 1 8.1287 -0.6604 -0.5094 33 1 4.9453 -2.3789 0.0026 34 1 0.8412 -2.5915 -0.5135 35 1 2.5296 -3.1552 -0.5129 36 1 0.7700 -5.6106 3.0908 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074144428.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:53 Heat of formation + Delta-G solvation = 32.087964 kcal Electronic energy + Delta-G solvation = -16984.678018 eV Core-core repulsion = 14433.126977 eV Total energy + Delta-G solvation = -2551.551040 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76669 -37.53530 -33.55214 -32.05869 -31.91676 -30.85812 -28.76881 -27.59647 -26.02501 -24.23045 -22.50044 -21.23532 -19.87021 -18.08821 -16.92359 -16.66614 -15.31018 -14.79609 -14.41692 -14.09479 -13.64668 -13.51996 -13.40657 -12.77424 -12.60810 -12.48211 -12.24269 -11.99405 -11.93139 -11.75865 -11.64905 -11.34324 -10.84899 -10.63111 -10.36335 -10.33786 -10.11643 -9.86485 -9.30281 -8.69801 -8.49531 -7.42066 -6.77856 -5.98622 -3.95728 1.64628 2.09098 3.33736 3.37906 3.41296 3.44514 3.64313 4.37495 4.48688 5.09496 5.21787 5.29161 5.36208 5.46403 5.51472 5.66822 5.72207 5.73138 5.89574 5.94477 5.98059 5.99160 6.02225 6.19033 6.25568 6.44974 6.53600 6.58122 6.71807 6.92244 7.09991 7.18072 7.30811 7.43820 7.60114 7.80772 7.83985 8.14850 8.63436 9.09301 9.62895 11.14728 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.007291 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.966071 B = 3839.668134 C = 4672.176728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.044 3.956 3 N -0.600 5.600 4 H 0.405 0.595 5 C 0.095 3.905 6 C -0.139 4.139 7 C -0.074 4.074 8 C -0.107 4.107 9 C -0.130 4.130 10 C -0.105 4.105 11 C -0.052 4.052 12 C -0.098 4.098 13 C -0.104 4.104 14 C 0.049 3.951 15 C -0.503 4.503 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.874 3.126 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.122 0.878 34 H 0.025 0.975 35 H 0.020 0.980 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.020 11.711 -7.702 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 N -0.204 5.204 4 H 0.240 0.760 5 C -0.013 4.013 6 C -0.160 4.160 7 C -0.075 4.075 8 C -0.164 4.164 9 C -0.131 4.131 10 C -0.161 4.161 11 C -0.070 4.070 12 C -0.103 4.103 13 C -0.111 4.111 14 C 0.011 3.989 15 C -0.542 4.542 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.702 3.298 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 H 0.082 0.918 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.129 0.871 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.140 0.860 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.867 11.640 -7.592 15.501 hybrid contribution -0.437 -0.196 -0.482 0.680 sum 6.429 11.444 -8.074 15.410 Atomic orbital electron populations 1.20370 0.88233 1.03695 1.01917 1.19979 0.93132 0.85154 1.07730 1.41542 1.03833 1.07641 1.67414 0.75968 1.18156 0.84498 0.94308 1.04337 1.19646 0.89365 0.97970 1.08978 1.19220 0.93811 0.93057 1.01456 1.20731 0.94900 0.99129 1.01615 1.19102 0.94993 0.92746 1.06255 1.20691 0.94036 0.99738 1.01684 1.20207 0.90018 0.99639 0.97134 1.19191 0.93758 0.91557 1.05767 1.20508 0.89525 0.95827 1.05202 1.18156 0.95525 0.87238 0.98002 1.21009 1.44217 0.98085 0.90855 0.91040 1.24996 0.95215 0.97850 0.95321 1.69910 1.47731 1.17994 1.18662 0.86857 0.78431 0.81097 0.83446 1.20258 1.21419 1.18911 0.91752 0.88650 0.92525 0.87148 0.91802 0.92237 0.91524 0.91913 0.92027 0.92138 0.85974 0.95701 0.96215 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.99 36.01 0.36 -1.00 16 2 C 0.04 0.85 7.08 -81.77 -0.58 0.27 16 3 N -0.60 -10.06 6.07 -6.95 -0.04 -10.10 16 4 H 0.40 5.20 8.96 -40.82 -0.37 4.83 16 5 C 0.09 1.74 7.28 -83.98 -0.61 1.13 16 6 C -0.14 -2.19 9.71 -39.43 -0.38 -2.58 16 7 C -0.07 -1.13 5.88 -104.58 -0.61 -1.74 16 8 C -0.11 -1.19 9.16 36.01 0.33 -0.86 16 9 C -0.13 -2.14 5.85 -104.99 -0.61 -2.75 16 10 C -0.10 -1.37 9.16 36.00 0.33 -1.04 16 11 C -0.05 -1.01 9.67 -39.65 -0.38 -1.39 16 12 C -0.10 -2.07 6.35 -105.14 -0.67 -2.74 16 13 C -0.10 -2.34 5.50 -102.71 -0.57 -2.91 16 14 C 0.05 1.20 4.11 -29.03 -0.12 1.08 16 15 C -0.50 -14.49 9.65 -34.44 -0.33 -14.82 16 16 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 19 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.09 1.73 7.66 -51.93 -0.40 1.34 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 29 H 0.07 0.68 6.66 -51.93 -0.35 0.34 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 33 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.02 0.60 6.75 -51.93 -0.35 0.25 16 35 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 298.49 15.07 4.50 4.50 Total: -1.00 -32.49 298.49 -8.55 -41.04 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.16 Total: 2.32 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -3.95 Total: -27.49 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.73 Total: -37.27 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.49 -8.55 -41.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074144428.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.128 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds