Wall clock time and date at job start Mon Mar 30 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36830 * 125.03503 * 2 1 4 4 H 0.96995 * 125.06810 * 359.96774 * 3 2 1 5 5 C 1.37687 * 109.87239 * 179.97438 * 3 2 1 6 6 C 1.39134 * 133.51079 * 180.34235 * 5 3 2 7 7 C 1.37742 * 119.77921 * 180.13839 * 6 5 3 8 8 C 1.50706 * 119.66531 * 179.77629 * 7 6 5 9 9 C 1.38830 * 120.67022 * 359.49529 * 7 6 5 10 10 C 1.50698 * 119.73895 * 180.25394 * 9 7 6 11 11 C 1.36628 * 120.52424 * 0.23340 * 9 7 6 12 12 C 1.39624 * 119.76753 * 0.02562 * 11 9 7 13 13 C 1.34236 * 125.03346 * 179.97438 * 2 1 3 14 14 C 1.50698 * 126.50341 * 0.02710 * 13 2 1 15 15 C 1.50706 * 109.46998 * 269.99739 * 14 13 2 16 16 H 1.07998 * 119.99747 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99782 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99547 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00337 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47395 * 89.99966 * 19 17 15 21 21 H 1.48506 * 109.46993 * 210.00005 * 19 17 15 22 22 H 1.48508 * 109.46799 * 329.99697 * 19 17 15 23 23 H 1.09001 * 109.46945 * 89.97609 * 1 2 3 24 24 H 1.08996 * 109.47033 * 209.98039 * 1 2 3 25 25 H 1.09001 * 109.46536 * 329.98209 * 1 2 3 26 26 H 1.07998 * 120.10683 * 359.89114 * 6 5 3 27 27 H 1.09001 * 109.46953 * 269.72295 * 8 7 6 28 28 H 1.09000 * 109.47318 * 29.71893 * 8 7 6 29 29 H 1.09000 * 109.47161 * 149.72523 * 8 7 6 30 30 H 1.08999 * 109.47235 * 90.00213 * 10 9 7 31 31 H 1.09001 * 109.47631 * 210.00217 * 10 9 7 32 32 H 1.09001 * 109.47072 * 330.00369 * 10 9 7 33 33 H 1.08000 * 120.11461 * 180.02562 * 11 9 7 34 34 H 1.09000 * 109.47371 * 29.99226 * 14 13 2 35 35 H 1.09004 * 109.47502 * 149.99899 * 14 13 2 36 36 H 0.97001 * 120.00006 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9624 2.0324 -0.0004 5 6 3.6215 0.7602 0.0006 6 6 4.8100 1.4836 0.0069 7 6 6.0159 0.8181 0.0026 8 6 7.3017 1.6042 0.0043 9 6 6.0590 -0.5696 0.0027 10 6 7.3900 -1.2762 0.0038 11 6 4.9041 -1.2997 0.0021 12 6 3.6705 -0.6457 0.0010 13 6 2.2776 -1.0991 0.0005 14 6 1.8003 -2.5286 0.0006 15 6 1.6408 -3.0048 1.4215 16 1 1.8632 -2.3391 2.2423 17 6 1.2109 -4.2904 1.6734 18 7 1.0721 -4.7061 2.9134 19 14 0.8269 -5.4420 0.2537 20 1 2.0530 -6.1911 -0.1216 21 1 -0.2314 -6.3992 0.6651 22 1 0.3538 -4.6514 -0.9109 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3632 0.8899 0.5141 26 1 4.7870 2.5633 0.0110 27 1 7.6130 1.7937 -1.0229 28 1 7.1468 2.5530 0.5179 29 1 8.0753 1.0344 0.5191 30 1 7.7101 -1.4466 1.0317 31 1 7.2942 -2.2326 -0.5101 32 1 8.1287 -0.6604 -0.5094 33 1 4.9453 -2.3789 0.0026 34 1 0.8412 -2.5915 -0.5135 35 1 2.5296 -3.1552 -0.5129 36 1 0.7700 -5.6106 3.0908 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074144428.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:52 Heat of formation + Delta-G solvation = 12.769609 kcal Electronic energy + Delta-G solvation = -16985.515725 eV Core-core repulsion = 14433.126977 eV Total energy + Delta-G solvation = -2552.388747 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.16459 -38.81895 -35.50809 -33.76772 -33.19060 -32.33303 -30.26270 -29.05478 -27.35467 -25.53701 -24.41727 -22.59616 -21.19882 -19.67959 -18.91662 -18.27791 -16.64350 -16.28576 -16.05101 -15.67197 -15.00561 -14.78026 -14.67817 -14.61429 -14.11369 -13.71083 -13.53322 -13.43620 -13.22000 -13.09070 -12.98521 -12.70749 -12.35108 -12.32618 -11.97779 -11.92032 -11.61590 -11.58972 -11.39943 -10.75260 -10.17068 -8.75995 -8.29597 -8.22096 -6.28970 0.28257 0.74705 1.36683 1.37649 1.50490 1.87147 2.31485 2.37579 2.98738 3.07906 3.85111 3.99926 4.07916 4.27878 4.38889 4.49650 4.50997 4.54117 4.76113 4.79837 4.87643 4.89586 4.94578 5.00335 5.06367 5.07905 5.13481 5.21098 5.30752 5.38832 5.44737 5.61628 5.74271 5.85896 5.97992 6.09343 6.35020 6.39653 6.75724 6.89558 7.33651 8.91180 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.007291 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.966071 B = 3839.668134 C = 4672.176728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.060 3.940 3 N -0.584 5.584 4 H 0.426 0.574 5 C 0.082 3.918 6 C -0.134 4.134 7 C -0.076 4.076 8 C -0.104 4.104 9 C -0.125 4.125 10 C -0.104 4.104 11 C -0.092 4.092 12 C -0.136 4.136 13 C -0.169 4.169 14 C 0.062 3.938 15 C -0.506 4.506 16 H 0.019 0.981 17 C 0.007 3.993 18 N -0.952 5.952 19 Si 0.948 3.052 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.244 1.244 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.147 0.853 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.032 0.968 35 H 0.012 0.988 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.992 13.862 -9.546 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 N -0.190 5.190 4 H 0.265 0.735 5 C -0.026 4.026 6 C -0.155 4.155 7 C -0.077 4.077 8 C -0.161 4.161 9 C -0.127 4.127 10 C -0.161 4.161 11 C -0.111 4.111 12 C -0.140 4.140 13 C -0.175 4.175 14 C 0.024 3.976 15 C -0.545 4.545 16 H 0.038 0.962 17 C -0.189 4.189 18 N -0.593 5.593 19 Si 0.771 3.229 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.167 1.167 23 H 0.109 0.891 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.165 0.835 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.050 0.950 35 H 0.030 0.970 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.850 13.838 -9.445 18.502 hybrid contribution -0.645 -0.748 0.172 1.003 sum 7.205 13.090 -9.273 17.586 Atomic orbital electron populations 1.20435 0.86083 1.03850 1.03681 1.20321 0.94460 0.85128 1.04732 1.41429 1.03135 1.08103 1.66353 0.73461 1.18440 0.85822 0.93437 1.04898 1.20116 0.88396 0.99730 1.07233 1.19780 0.95686 0.92730 0.99497 1.20815 0.92628 0.99340 1.03275 1.19544 0.95272 0.93850 1.04003 1.20769 0.92837 0.99973 1.02502 1.20285 0.91287 0.99060 1.00464 1.19477 0.93665 0.93515 1.07393 1.20461 0.91368 0.95491 1.10179 1.17877 0.95541 0.89239 0.94920 1.21164 1.43817 0.97629 0.91841 0.96246 1.25951 0.94899 0.99689 0.98388 1.70070 1.49171 1.18777 1.21297 0.85697 0.78559 0.78621 0.80056 1.19556 1.20514 1.16741 0.89060 0.91416 0.89388 0.83541 0.89848 0.90463 0.90415 0.91259 0.92195 0.89159 0.88130 0.94972 0.96988 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.57 9.99 71.24 0.71 -1.86 16 2 C 0.06 2.31 7.08 40.87 0.29 2.60 16 3 N -0.58 -18.80 6.07 -175.90 -1.07 -19.87 16 4 H 0.43 9.78 8.96 -92.71 -0.83 8.95 16 5 C 0.08 2.95 7.28 39.03 0.28 3.23 16 6 C -0.13 -3.90 9.71 22.37 0.22 -3.68 16 7 C -0.08 -2.10 5.88 -19.84 -0.12 -2.22 16 8 C -0.10 -1.86 9.16 71.24 0.65 -1.21 16 9 C -0.13 -4.07 5.85 -20.10 -0.12 -4.18 16 10 C -0.10 -2.56 9.16 71.24 0.65 -1.91 16 11 C -0.09 -3.80 9.67 22.23 0.22 -3.58 16 12 C -0.14 -5.97 6.35 -20.20 -0.13 -6.09 16 13 C -0.17 -7.87 5.50 -18.63 -0.10 -7.97 16 14 C 0.06 3.20 4.11 29.10 0.12 3.32 16 15 C -0.51 -30.90 9.65 25.60 0.25 -30.65 16 16 H 0.02 1.33 7.98 -2.91 -0.02 1.31 16 17 C 0.01 0.42 5.47 84.66 0.46 0.88 16 18 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 19 Si 0.95 45.52 27.47 68.60 1.88 47.41 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.24 -10.83 6.54 99.48 0.65 -10.18 16 23 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.07 2.49 7.66 -2.39 -0.02 2.47 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.15 8.07 -2.39 -0.02 1.13 16 29 H 0.08 1.25 6.66 -2.39 -0.02 1.23 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.48 8.08 -2.39 -0.02 1.46 16 32 H 0.09 1.67 6.66 -2.39 -0.02 1.65 16 33 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.03 1.57 6.75 -2.39 -0.02 1.55 16 35 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 36 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -75.75 298.49 4.70 -71.06 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.19 Total: 15.86 kcal Atomic # 6 Polarization: -56.71 SS G_CDS: 3.39 Total: -53.32 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -0.77 Total: -81.01 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -75.75 4.70 -71.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074144428.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.829 kcal (2) G-P(sol) polarization free energy of solvation -75.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds