Wall clock time and date at job start Mon Mar 30 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47019 * 2 1 4 4 N 1.36829 * 125.03142 * 264.97109 * 3 2 1 5 5 H 0.97000 * 125.06546 * 0.04696 * 4 3 2 6 6 C 1.37689 * 109.87137 * 180.02562 * 4 3 2 7 7 C 1.39131 * 133.51077 * 180.02562 * 6 4 3 8 8 C 1.37747 * 119.78074 * 179.97438 * 7 6 4 9 9 C 1.38830 * 120.66518 * 0.25422 * 8 7 6 10 10 C 1.50696 * 119.73446 * 179.71973 * 9 8 7 11 11 C 1.36622 * 120.52728 * 359.46321 * 9 8 7 12 12 C 1.39628 * 119.76510 * 0.54679 * 11 9 8 13 13 C 1.34236 * 125.03420 * 84.99740 * 3 2 1 14 14 C 1.50701 * 126.50391 * 359.97438 * 13 3 2 15 15 C 1.50703 * 109.46743 * 89.99823 * 14 13 3 16 16 H 1.07996 * 120.00445 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99488 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00263 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99936 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46751 * 60.00628 * 19 17 15 21 21 H 1.48496 * 109.47116 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47203 * 300.00588 * 19 17 15 23 23 H 1.08993 * 109.47260 * 300.00189 * 1 2 3 24 24 H 1.09002 * 109.46878 * 60.00429 * 1 2 3 25 25 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47033 * 239.99807 * 2 1 3 27 27 H 1.09002 * 109.46878 * 119.99571 * 2 1 3 28 28 H 1.08005 * 120.10849 * 0.02562 * 7 6 4 29 29 H 1.08002 * 119.66366 * 179.97438 * 8 7 6 30 30 H 1.09005 * 109.47358 * 90.00024 * 10 9 8 31 31 H 1.08996 * 109.47452 * 209.99859 * 10 9 8 32 32 H 1.09000 * 109.47247 * 330.00068 * 10 9 8 33 33 H 1.08006 * 120.11930 * 180.28463 * 11 9 8 34 34 H 1.08999 * 109.47092 * 209.99649 * 14 13 3 35 35 H 1.08998 * 109.46729 * 330.00502 * 14 13 3 36 36 H 0.96996 * 119.99758 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3867 2.1286 -1.1161 5 1 2.3514 1.7909 -2.0247 6 6 2.8005 3.3919 -0.7574 7 6 3.2562 4.4914 -1.4780 8 6 3.6034 5.6478 -0.8150 9 6 3.5085 5.7270 0.5677 10 6 3.8999 7.0004 1.2721 11 6 3.0580 4.6614 1.2946 12 6 2.7010 3.4792 0.6431 13 6 2.1988 2.1793 1.0949 14 6 1.9217 1.7711 2.5189 15 6 3.1637 1.1628 3.1177 16 1 4.0637 1.0804 2.5265 17 6 3.1512 0.7123 4.4208 18 7 2.0553 0.8131 5.1409 19 14 4.6908 -0.0411 5.1634 20 1 5.7909 0.9560 5.1391 21 1 4.4177 -0.4435 6.5665 22 1 5.0874 -1.2353 4.3747 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3367 4.4385 -2.5538 29 1 3.9574 6.5000 -1.3763 30 1 3.0297 7.6515 1.3560 31 1 4.2743 6.7644 2.2681 32 1 4.6787 7.5066 0.7016 33 1 2.9824 4.7318 2.3697 34 1 1.6309 2.6475 3.0981 35 1 1.1140 1.0394 2.5364 36 1 2.0464 0.4958 6.0575 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074144444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:16 Heat of formation + Delta-G solvation = 27.304161 kcal Electronic energy + Delta-G solvation = -17027.308922 eV Core-core repulsion = 14475.550441 eV Total energy + Delta-G solvation = -2551.758482 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.70232 -37.08897 -33.72117 -32.80037 -31.44250 -30.77890 -28.85344 -26.48415 -25.80969 -23.46310 -22.90210 -20.86632 -20.35458 -18.11862 -17.00902 -16.16458 -15.54168 -14.67758 -14.44079 -14.09459 -13.73715 -13.62095 -13.18337 -13.07621 -12.70247 -12.26053 -11.89095 -11.81665 -11.68737 -11.39166 -11.23892 -10.85834 -10.77035 -10.60731 -10.51106 -10.44821 -10.01136 -9.62482 -9.39393 -8.71775 -8.32206 -7.43844 -6.77778 -5.92961 -3.96745 1.71171 2.14330 3.36355 3.39958 3.41234 3.50669 3.69580 4.43541 4.55046 5.19156 5.26045 5.38262 5.40146 5.49605 5.54843 5.66925 5.78714 5.93190 5.96603 5.98632 6.02042 6.14328 6.24300 6.34968 6.44722 6.57651 6.63515 6.66832 6.82074 6.97195 7.22116 7.44658 7.53376 7.65672 7.79150 8.00354 8.02672 8.21504 8.48559 9.08508 9.66229 11.14951 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.008420 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.621717 B = 3324.667070 C = 4467.511850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C 0.043 3.957 4 N -0.600 5.600 5 H 0.403 0.597 6 C 0.090 3.910 7 C -0.140 4.140 8 C -0.105 4.105 9 C -0.135 4.135 10 C -0.103 4.103 11 C -0.052 4.052 12 C -0.096 4.096 13 C -0.105 4.105 14 C 0.083 3.917 15 C -0.503 4.503 16 H 0.053 0.947 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.024 0.976 35 H 0.028 0.972 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 5.014 -11.786 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.061 4.061 4 N -0.204 5.204 5 H 0.239 0.761 6 C -0.018 4.018 7 C -0.161 4.161 8 C -0.124 4.124 9 C -0.137 4.137 10 C -0.160 4.160 11 C -0.071 4.071 12 C -0.102 4.102 13 C -0.111 4.111 14 C 0.045 3.955 15 C -0.542 4.542 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.183 4.878 -11.687 12.666 hybrid contribution 0.927 -0.583 -0.080 1.098 sum 0.744 4.295 -11.767 12.549 Atomic orbital electron populations 1.21731 0.95098 1.01230 1.02076 1.20095 0.95654 0.90230 1.03209 1.19986 1.05968 0.94810 0.85303 1.41568 1.59880 1.10888 1.08073 0.76138 1.18212 1.02481 0.86565 0.94517 1.19817 1.06019 0.92075 0.98169 1.20487 1.01633 0.96627 0.93683 1.19249 1.04582 0.96275 0.93555 1.20646 1.00588 0.94670 1.00052 1.20250 0.96312 0.90830 0.99698 1.19276 1.04137 0.95170 0.91578 1.20995 1.02664 0.90709 0.96726 1.17700 0.96803 0.96378 0.84584 1.21080 0.97289 1.38977 0.96833 0.92835 1.24984 0.95979 0.96216 0.97130 1.69947 1.26899 1.47505 1.09238 0.86691 0.83749 0.79698 0.78092 1.20281 1.21336 1.20345 0.91590 0.93690 0.92681 0.92433 0.88320 0.87240 0.86734 0.92140 0.91887 0.92437 0.85952 0.95747 0.95421 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 37.16 0.37 -1.78 16 2 C -0.05 -0.90 5.95 -27.88 -0.17 -1.06 16 3 C 0.04 0.84 6.34 -81.77 -0.52 0.32 16 4 N -0.60 -10.15 6.07 -6.95 -0.04 -10.19 16 5 H 0.40 5.29 8.96 -40.82 -0.37 4.92 16 6 C 0.09 1.67 7.28 -83.99 -0.61 1.06 16 7 C -0.14 -2.21 10.08 -39.43 -0.40 -2.61 16 8 C -0.11 -1.60 9.66 -39.54 -0.38 -1.98 16 9 C -0.14 -2.25 5.85 -104.99 -0.61 -2.86 16 10 C -0.10 -1.36 9.99 36.00 0.36 -1.00 16 11 C -0.05 -1.04 9.67 -39.65 -0.38 -1.42 16 12 C -0.10 -2.06 6.35 -105.14 -0.67 -2.73 16 13 C -0.10 -2.39 5.50 -102.71 -0.57 -2.95 16 14 C 0.08 2.16 5.11 -29.03 -0.15 2.01 16 15 C -0.50 -14.21 9.09 -34.44 -0.31 -14.53 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H 0.07 1.11 7.67 -51.93 -0.40 0.72 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 1.87 7.92 -51.93 -0.41 1.46 16 28 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 34 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.74 7.34 -51.93 -0.38 0.36 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -30.96 305.41 -9.18 -40.14 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.32 Total: 2.44 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -4.14 Total: -27.99 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.69 Total: -35.94 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.96 -9.18 -40.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074144444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.444 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds