Wall clock time and date at job start Mon Mar 30 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47019 * 2 1 4 4 N 1.36829 * 125.03142 * 264.97109 * 3 2 1 5 5 H 0.97000 * 125.06546 * 0.04696 * 4 3 2 6 6 C 1.37689 * 109.87137 * 180.02562 * 4 3 2 7 7 C 1.39131 * 133.51077 * 180.02562 * 6 4 3 8 8 C 1.37747 * 119.78074 * 179.97438 * 7 6 4 9 9 C 1.38830 * 120.66518 * 0.25422 * 8 7 6 10 10 C 1.50696 * 119.73446 * 179.71973 * 9 8 7 11 11 C 1.36622 * 120.52728 * 359.46321 * 9 8 7 12 12 C 1.39628 * 119.76510 * 0.54679 * 11 9 8 13 13 C 1.34236 * 125.03420 * 84.99740 * 3 2 1 14 14 C 1.50701 * 126.50391 * 359.97438 * 13 3 2 15 15 C 1.50703 * 109.46743 * 89.99823 * 14 13 3 16 16 H 1.07996 * 120.00445 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99488 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00263 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99936 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46751 * 60.00628 * 19 17 15 21 21 H 1.48496 * 109.47116 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47203 * 300.00588 * 19 17 15 23 23 H 1.08993 * 109.47260 * 300.00189 * 1 2 3 24 24 H 1.09002 * 109.46878 * 60.00429 * 1 2 3 25 25 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47033 * 239.99807 * 2 1 3 27 27 H 1.09002 * 109.46878 * 119.99571 * 2 1 3 28 28 H 1.08005 * 120.10849 * 0.02562 * 7 6 4 29 29 H 1.08002 * 119.66366 * 179.97438 * 8 7 6 30 30 H 1.09005 * 109.47358 * 90.00024 * 10 9 8 31 31 H 1.08996 * 109.47452 * 209.99859 * 10 9 8 32 32 H 1.09000 * 109.47247 * 330.00068 * 10 9 8 33 33 H 1.08006 * 120.11930 * 180.28463 * 11 9 8 34 34 H 1.08999 * 109.47092 * 209.99649 * 14 13 3 35 35 H 1.08998 * 109.46729 * 330.00502 * 14 13 3 36 36 H 0.96996 * 119.99758 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3867 2.1286 -1.1161 5 1 2.3514 1.7909 -2.0247 6 6 2.8005 3.3919 -0.7574 7 6 3.2562 4.4914 -1.4780 8 6 3.6034 5.6478 -0.8150 9 6 3.5085 5.7270 0.5677 10 6 3.8999 7.0004 1.2721 11 6 3.0580 4.6614 1.2946 12 6 2.7010 3.4792 0.6431 13 6 2.1988 2.1793 1.0949 14 6 1.9217 1.7711 2.5189 15 6 3.1637 1.1628 3.1177 16 1 4.0637 1.0804 2.5265 17 6 3.1512 0.7123 4.4208 18 7 2.0553 0.8131 5.1409 19 14 4.6908 -0.0411 5.1634 20 1 5.7909 0.9560 5.1391 21 1 4.4177 -0.4435 6.5665 22 1 5.0874 -1.2353 4.3747 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3367 4.4385 -2.5538 29 1 3.9574 6.5000 -1.3763 30 1 3.0297 7.6515 1.3560 31 1 4.2743 6.7644 2.2681 32 1 4.6787 7.5066 0.7016 33 1 2.9824 4.7318 2.3697 34 1 1.6309 2.6475 3.0981 35 1 1.1140 1.0394 2.5364 36 1 2.0464 0.4958 6.0575 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074144444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:16 Heat of formation + Delta-G solvation = 10.238315 kcal Electronic energy + Delta-G solvation = -17028.048953 eV Core-core repulsion = 14475.550441 eV Total energy + Delta-G solvation = -2552.498512 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.14270 -38.43438 -35.58963 -34.38908 -33.07771 -32.08109 -30.50294 -28.23534 -27.10033 -25.10979 -24.59984 -22.23870 -21.72882 -19.71489 -18.51146 -18.31530 -16.91939 -16.48709 -15.99683 -15.52156 -15.09564 -14.91349 -14.51959 -14.38066 -14.18837 -14.06123 -13.70835 -13.28417 -13.10423 -12.89824 -12.62989 -12.62392 -12.48565 -12.06158 -11.98846 -11.79943 -11.68165 -11.57990 -11.32896 -10.54657 -10.26414 -8.81026 -8.40506 -8.03629 -6.26366 0.31992 0.78220 1.37576 1.40805 1.48767 1.91915 2.33255 2.43860 3.05864 3.14650 3.84295 3.97954 4.17180 4.23290 4.30531 4.46960 4.50640 4.58169 4.62926 4.76442 4.87854 4.92514 5.00975 5.05654 5.14061 5.22377 5.23956 5.33106 5.36404 5.44025 5.52091 5.74139 5.79686 5.90621 6.01367 6.13705 6.31358 6.41956 6.84541 6.92660 7.41038 8.94231 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.008420 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.621717 B = 3324.667070 C = 4467.511850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C 0.066 3.934 4 N -0.582 5.582 5 H 0.426 0.574 6 C 0.079 3.921 7 C -0.127 4.127 8 C -0.102 4.102 9 C -0.126 4.126 10 C -0.103 4.103 11 C -0.096 4.096 12 C -0.133 4.133 13 C -0.167 4.167 14 C 0.102 3.898 15 C -0.517 4.517 16 H 0.044 0.956 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.958 3.042 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.266 1.266 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.152 0.848 29 H 0.159 0.841 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.093 0.907 34 H -0.016 1.016 35 H 0.007 0.993 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 5.518 -14.883 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 C -0.041 4.041 4 N -0.188 5.188 5 H 0.265 0.735 6 C -0.029 4.029 7 C -0.148 4.148 8 C -0.121 4.121 9 C -0.127 4.127 10 C -0.159 4.159 11 C -0.115 4.115 12 C -0.138 4.138 13 C -0.173 4.173 14 C 0.064 3.936 15 C -0.555 4.555 16 H 0.062 0.938 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.191 1.191 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.170 0.830 29 H 0.177 0.823 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.002 0.998 35 H 0.025 0.975 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.221 5.390 -14.824 15.821 hybrid contribution 0.471 -0.650 0.828 1.153 sum 1.692 4.740 -13.996 14.874 Atomic orbital electron populations 1.21669 0.93662 1.02666 1.01450 1.20166 0.96842 0.88642 1.03570 1.20181 1.03334 0.95347 0.85224 1.41412 1.58760 1.10187 1.08432 0.73468 1.18481 1.03173 0.87825 0.93383 1.20330 1.03563 0.90734 1.00147 1.21007 1.00277 0.97863 0.92965 1.19679 1.02162 0.96148 0.94713 1.20722 1.02038 0.93417 0.99741 1.20268 0.99896 0.92499 0.98817 1.19516 1.05505 0.95065 0.93723 1.20733 1.07520 0.93293 0.95792 1.17267 0.95414 0.93802 0.87088 1.21321 0.97621 1.39245 0.97363 0.93761 1.25859 0.99319 0.96544 0.97473 1.70077 1.29052 1.48315 1.09609 0.85611 0.79537 0.79036 0.77546 1.19907 1.20346 1.19084 0.94786 0.91671 0.90229 0.88526 0.91360 0.83048 0.82335 0.90689 0.92810 0.89484 0.88872 0.99791 0.97480 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.89 71.98 0.71 -3.31 16 2 C -0.05 -1.78 5.95 29.85 0.18 -1.61 16 3 C 0.07 2.57 6.34 40.87 0.26 2.83 16 4 N -0.58 -18.65 6.07 -175.91 -1.07 -19.71 16 5 H 0.43 9.66 8.96 -92.71 -0.83 8.83 16 6 C 0.08 2.82 7.28 39.03 0.28 3.10 16 7 C -0.13 -3.54 10.08 22.37 0.23 -3.31 16 8 C -0.10 -2.73 9.66 22.30 0.22 -2.51 16 9 C -0.13 -4.05 5.85 -20.10 -0.12 -4.17 16 10 C -0.10 -2.53 9.99 71.23 0.71 -1.81 16 11 C -0.10 -4.04 9.67 22.23 0.22 -3.82 16 12 C -0.13 -5.95 6.35 -20.20 -0.13 -6.07 16 13 C -0.17 -8.09 5.50 -18.63 -0.10 -8.19 16 14 C 0.10 5.82 5.11 29.10 0.15 5.97 16 15 C -0.52 -31.05 9.09 25.60 0.23 -30.82 16 16 H 0.04 2.67 7.74 -2.91 -0.02 2.65 16 17 C 0.01 0.34 5.46 84.65 0.46 0.80 16 18 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 19 Si 0.96 45.85 29.54 68.60 2.03 47.88 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H 0.03 1.20 7.67 -2.39 -0.02 1.18 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 26 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 2.69 7.92 -2.39 -0.02 2.67 16 28 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.05 1.41 8.08 -2.39 -0.02 1.39 16 32 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 33 H 0.09 4.25 8.06 -2.91 -0.02 4.23 16 34 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 35 H 0.01 0.41 7.34 -2.39 -0.02 0.40 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -72.78 305.41 4.78 -68.00 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.24 Total: 14.14 kcal Atomic # 6 Polarization: -56.23 SS G_CDS: 3.30 Total: -52.93 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -0.78 Total: -77.09 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -72.78 4.78 -68.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074144444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.240 kcal (2) G-P(sol) polarization free energy of solvation -72.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds