Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46912 * 2 1 4 4 C 1.38829 * 119.73831 * 269.97716 * 3 2 1 5 5 C 1.37746 * 120.67245 * 180.26578 * 4 3 2 6 6 C 1.39133 * 119.77801 * 359.51605 * 5 4 3 7 7 C 1.40674 * 119.32586 * 0.47715 * 6 5 4 8 8 C 1.46486 * 106.03923 * 179.75931 * 7 6 5 9 9 C 1.34245 * 106.99583 * 0.02562 * 8 7 6 10 10 N 1.36827 * 109.92996 * 0.02562 * 9 8 7 11 11 C 1.46501 * 125.06464 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46741 * 264.97494 * 11 10 9 13 13 C 1.50698 * 109.46752 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00268 * 359.97438 * 13 12 11 15 15 C 1.37889 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99713 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99906 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47211 * 90.00315 * 17 15 13 19 19 H 1.48501 * 109.47000 * 209.99862 * 17 15 13 20 20 H 1.48491 * 109.47215 * 329.99797 * 17 15 13 21 21 C 1.36627 * 119.73762 * 90.00093 * 3 2 1 22 22 H 1.09001 * 109.46983 * 299.99692 * 1 2 3 23 23 H 1.09003 * 109.47422 * 60.00117 * 1 2 3 24 24 H 1.09003 * 109.46941 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47084 * 239.99939 * 2 1 3 26 26 H 1.08998 * 109.46983 * 119.99718 * 2 1 3 27 27 H 1.08003 * 119.66310 * 0.04845 * 4 3 2 28 28 H 1.07998 * 120.11741 * 179.68285 * 5 4 3 29 29 H 1.08000 * 126.50541 * 180.02562 * 8 7 6 30 30 H 1.07993 * 125.03603 * 179.97438 * 9 8 7 31 31 H 1.09003 * 109.46989 * 24.97121 * 11 10 9 32 32 H 1.08996 * 109.47108 * 144.97365 * 11 10 9 33 33 H 1.09003 * 109.47074 * 299.99575 * 12 11 10 34 34 H 1.08996 * 109.47425 * 60.00064 * 12 11 10 35 35 H 0.97000 * 120.00089 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.11638 * 359.95329 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0699 -1.2055 5 6 2.7265 3.3666 -1.2279 6 6 2.9585 4.0383 -0.0318 7 6 2.7239 3.3761 1.1870 8 6 3.0633 4.3354 2.2407 9 6 3.4619 5.4631 1.6312 10 7 3.4050 5.3045 0.2733 11 6 3.7674 6.3286 -0.7096 12 6 2.5106 7.0850 -1.1448 13 6 2.8835 8.1389 -2.1554 14 1 3.9137 8.2576 -2.4568 15 6 1.9093 8.9524 -2.6945 16 7 0.6549 8.8082 -2.3271 17 14 2.3716 10.2592 -3.9467 18 1 2.2968 9.6835 -5.3135 19 1 1.4303 11.4028 -3.8391 20 1 3.7549 10.7302 -3.6828 21 6 2.2582 2.0598 1.1863 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0786 1.5517 -2.1351 28 1 2.9072 3.8612 -2.1708 29 1 3.0040 4.1674 3.3059 30 1 3.7796 6.3626 2.1375 31 1 4.4752 7.0268 -0.2628 32 1 4.2244 5.8535 -1.5776 33 1 1.8028 6.3869 -1.5916 34 1 2.0537 7.5601 -0.2767 35 1 -0.0305 9.3802 -2.7065 36 1 2.0767 1.5486 2.1203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075233242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = 20.554893 kcal Electronic energy + Delta-G solvation = -16594.782495 eV Core-core repulsion = 14042.731343 eV Total energy + Delta-G solvation = -2552.051152 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15380 -38.65600 -35.93497 -34.18188 -33.85775 -31.53661 -29.58149 -29.31949 -26.64595 -24.53652 -23.36264 -23.20057 -21.22584 -20.94623 -18.79539 -17.62983 -17.18772 -16.65917 -16.13902 -15.61815 -15.33852 -15.17111 -14.52438 -14.40779 -14.24021 -13.94242 -13.80953 -13.51140 -13.35416 -13.01772 -12.88501 -12.61330 -12.12639 -12.07340 -11.99644 -11.76657 -11.56151 -11.54875 -11.40075 -10.66201 -10.46733 -8.94781 -8.46014 -8.26791 -6.42734 0.27425 0.75369 1.38672 1.40076 1.51360 1.87798 2.08376 2.38249 3.00209 3.05893 3.78140 3.93611 3.97258 4.09285 4.20485 4.37180 4.43444 4.57122 4.62479 4.64827 4.68349 4.76614 4.83476 4.99098 5.11395 5.14760 5.16489 5.27853 5.32621 5.37968 5.46505 5.56564 5.67420 5.84921 5.94907 6.02612 6.05334 6.43046 6.50861 6.74115 7.28397 8.83932 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.005148 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.082307 B = 5437.286486 C = 5982.480188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.117 4.117 4 C -0.103 4.103 5 C -0.144 4.144 6 C 0.064 3.936 7 C -0.131 4.131 8 C -0.222 4.222 9 C 0.044 3.956 10 N -0.486 5.486 11 C 0.125 3.875 12 C 0.024 3.976 13 C -0.546 4.546 14 H 0.072 0.928 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.972 3.028 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.257 1.257 21 C -0.079 4.079 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.108 0.892 29 H 0.170 0.830 30 H 0.187 0.813 31 H 0.097 0.903 32 H 0.076 0.924 33 H -0.016 1.016 34 H -0.008 1.008 35 H 0.265 0.735 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.124 -14.319 6.182 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.118 4.118 4 C -0.122 4.122 5 C -0.165 4.165 6 C -0.042 4.042 7 C -0.136 4.136 8 C -0.247 4.247 9 C -0.082 4.082 10 N -0.167 5.167 11 C 0.004 3.996 12 C -0.014 4.014 13 C -0.584 4.584 14 H 0.090 0.910 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.181 1.181 21 C -0.098 4.098 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.158 0.842 28 H 0.126 0.874 29 H 0.188 0.812 30 H 0.204 0.796 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.003 0.997 34 H 0.010 0.990 35 H 0.074 0.926 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.065 -13.977 5.944 15.723 hybrid contribution -0.211 1.220 -0.796 1.472 sum 3.854 -12.757 5.148 14.286 Atomic orbital electron populations 1.21759 0.94831 1.02251 1.01496 1.20472 0.95992 0.90746 1.03663 1.19655 1.02106 0.97937 0.92151 1.20909 0.99404 0.93040 0.98888 1.20265 1.05162 0.96086 0.94963 1.18703 1.03008 0.86164 0.96341 1.19616 1.05725 0.95782 0.92483 1.21912 1.11170 0.92716 0.98870 1.22373 1.03014 1.00994 0.81858 1.44501 1.54982 1.10590 1.06635 1.21875 0.98384 0.88617 0.90731 1.19218 0.92732 0.94135 0.95268 1.21495 0.94913 1.17477 1.24541 0.91008 1.26025 0.94640 0.99983 0.98909 1.70126 1.01687 1.40600 1.44806 0.85346 0.78670 0.77841 0.78593 1.19780 1.20840 1.18123 1.20348 0.98754 0.91969 0.98704 0.93317 0.93665 0.90697 0.90181 0.89888 0.84172 0.87423 0.81214 0.79574 0.88450 0.90556 0.99747 0.98964 0.92608 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.89 71.98 0.71 -2.00 16 2 C -0.07 -1.38 6.05 29.85 0.18 -1.20 16 3 C -0.12 -3.21 5.10 -20.10 -0.10 -3.31 16 4 C -0.10 -3.16 9.66 22.29 0.22 -2.94 16 5 C -0.14 -5.38 10.00 22.37 0.22 -5.15 16 6 C 0.06 2.55 6.81 39.03 0.27 2.82 16 7 C -0.13 -4.61 6.37 -20.20 -0.13 -4.74 16 8 C -0.22 -6.99 11.08 23.51 0.26 -6.73 16 9 C 0.04 1.47 11.27 83.00 0.94 2.40 16 10 N -0.49 -19.24 2.78 -515.92 -1.43 -20.68 16 11 C 0.12 5.21 5.94 86.38 0.51 5.72 16 12 C 0.02 1.29 5.30 29.85 0.16 1.45 16 13 C -0.55 -30.32 9.11 25.60 0.23 -30.09 16 14 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 15 C 0.00 0.17 5.46 84.66 0.46 0.63 16 16 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 17 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 C -0.08 -2.33 9.67 22.23 0.22 -2.12 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 26 H 0.08 1.34 8.07 -2.39 -0.02 1.32 16 27 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 28 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 29 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.19 5.05 8.06 -2.91 -0.02 5.02 16 31 H 0.10 3.63 8.12 -2.39 -0.02 3.61 16 32 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -67.44 308.10 6.06 -61.38 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.04 Total: 15.91 kcal Atomic # 6 Polarization: -49.39 SS G_CDS: 4.14 Total: -45.25 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -1.15 Total: -77.42 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -67.44 6.06 -61.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075233242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.937 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds