Wall clock time and date at job start Mon Mar 30 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 120.00271 * 2 1 4 4 C 1.38230 * 119.99880 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00236 * 179.72466 * 5 4 3 7 7 C 1.52995 * 109.47064 * 59.99808 * 6 5 4 8 8 C 1.52999 * 109.46805 * 299.99784 * 6 5 4 9 9 C 1.47201 * 109.47130 * 300.00096 * 8 6 5 10 10 N 5.18640 * 138.76629 * 261.26694 * 2 1 3 11 11 C 1.53003 * 109.46956 * 180.02562 * 6 5 4 12 12 C 1.50702 * 109.46956 * 179.97438 * 11 6 5 13 13 H 1.08004 * 119.99792 * 359.97438 * 12 11 6 14 14 C 1.37875 * 120.00023 * 180.02562 * 12 11 6 15 15 N 1.31515 * 120.00109 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00007 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47229 * 89.99356 * 16 14 12 18 18 H 1.48496 * 109.47201 * 209.99646 * 16 14 12 19 19 H 1.48501 * 109.47274 * 329.99567 * 16 14 12 20 20 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 21 21 C 1.38234 * 119.99485 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47294 * 89.99327 * 1 2 3 23 23 H 1.09003 * 109.47421 * 209.99893 * 1 2 3 24 24 H 1.09009 * 109.46652 * 329.99537 * 1 2 3 25 25 H 1.08001 * 119.99769 * 359.97438 * 3 2 1 26 26 H 1.08000 * 120.00376 * 180.02562 * 4 3 2 27 27 H 1.08996 * 109.47239 * 60.00747 * 7 6 5 28 28 H 1.09007 * 109.46699 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.47299 * 299.99551 * 7 6 5 30 30 H 1.08996 * 109.47277 * 59.99986 * 8 6 5 31 31 H 1.08994 * 109.46996 * 180.02562 * 8 6 5 32 32 H 1.09001 * 109.46782 * 299.99106 * 11 6 5 33 33 H 1.09001 * 109.47400 * 59.99825 * 11 6 5 34 34 H 0.97001 * 119.99847 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.00299 * 179.97438 * 20 5 4 36 36 H 1.07997 * 120.00489 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0002 -0.0041 7 6 6.2934 0.7248 1.2409 8 6 6.2839 0.7171 -1.2575 9 6 5.7887 0.0195 -2.4553 10 7 5.4073 -0.5190 -3.3789 11 6 6.2886 -1.4428 -0.0022 12 6 7.7956 -1.4429 -0.0085 13 1 8.3356 -0.5076 -0.0138 14 6 8.4849 -2.6370 -0.0087 15 7 7.8273 -3.7759 -0.0027 16 14 10.3529 -2.6371 -0.0172 17 1 10.8543 -2.6334 1.3806 18 1 10.8446 -3.8514 -0.7163 19 1 10.8448 -1.4264 -0.7227 20 6 3.5805 -1.1973 0.0027 21 6 2.1981 -1.1972 0.0005 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 1.6582 2.1324 -0.0004 26 1 4.1207 2.1323 0.0010 27 1 5.9336 0.2138 2.1339 28 1 7.3835 0.7243 1.2370 29 1 5.9302 1.7525 1.2391 30 1 5.9207 1.7447 -1.2593 31 1 7.3739 0.7167 -1.2619 32 1 5.9287 -1.9542 0.8906 33 1 5.9219 -1.9590 -0.8894 34 1 8.3123 -4.6159 -0.0024 35 1 4.1204 -2.1326 0.0031 36 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075622047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:34 Heat of formation + Delta-G solvation = 26.766133 kcal Electronic energy + Delta-G solvation = -17191.444240 eV Core-core repulsion = 14639.662428 eV Total energy + Delta-G solvation = -2551.781812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60647 -36.96641 -35.05384 -32.68945 -31.40686 -30.64392 -27.87065 -27.18196 -26.41142 -23.67634 -21.85855 -21.21972 -18.85836 -17.29008 -16.01507 -15.58647 -14.94723 -14.57491 -14.31191 -13.94140 -13.82991 -13.49115 -13.04449 -12.85707 -12.59454 -12.14943 -12.00948 -11.88916 -11.65854 -11.45374 -11.33600 -10.98405 -10.87270 -10.82241 -10.69141 -10.31764 -10.20553 -10.10659 -9.21748 -8.98355 -8.51361 -8.38813 -8.05772 -6.04193 -4.06673 1.74294 1.82820 3.29452 3.37175 3.37746 3.53301 3.58699 4.16259 4.41742 4.78569 5.09178 5.13299 5.31289 5.32475 5.42411 5.47731 5.66692 5.70846 5.78091 5.89275 5.91162 6.05319 6.11369 6.18881 6.32700 6.42521 6.50708 6.60261 6.79874 6.84258 6.95187 6.98765 7.24444 7.45672 7.57390 7.65689 7.92318 8.32161 8.35952 8.97629 9.57613 11.07163 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030151 B = 0.006525 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.423698 B = 4290.112170 C = 4413.116127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.067 4.067 6 C -0.017 4.017 7 C -0.123 4.123 8 C -0.011 4.011 9 C 0.231 3.769 10 N -0.461 5.461 11 C 0.030 3.970 12 C -0.519 4.519 13 H 0.062 0.938 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.273 1.273 20 C -0.104 4.104 21 C -0.123 4.123 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.261 0.739 35 H 0.135 0.865 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 10.314 2.600 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.145 4.145 4 C -0.136 4.136 5 C -0.067 4.067 6 C -0.019 4.019 7 C -0.180 4.180 8 C -0.051 4.051 9 C -0.086 4.086 10 N -0.139 5.139 11 C -0.007 4.007 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.715 3.285 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.122 4.122 21 C -0.141 4.141 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.131 0.869 26 H 0.137 0.863 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.289 9.317 1.205 13.212 hybrid contribution 1.198 -0.082 0.364 1.255 sum -8.091 9.235 1.569 12.378 Atomic orbital electron populations 1.20728 0.91933 1.02164 1.01766 1.19808 0.95510 0.93464 1.01589 1.20869 0.94230 0.96947 1.02471 1.20976 0.93831 0.97727 1.01067 1.20148 0.96066 0.92741 0.97722 1.19664 0.88733 1.00503 0.92966 1.21736 1.02321 0.97567 0.96394 1.19456 1.03047 0.96465 0.86094 1.28993 0.92566 0.93151 0.93926 1.81016 1.10378 1.09464 1.13015 1.19299 0.95984 0.87637 0.97746 1.21186 0.91232 0.92271 1.51060 0.92026 1.24987 0.98168 0.95757 0.95255 1.69950 1.35431 0.97332 1.50336 0.86667 0.86114 0.77617 0.78067 1.20661 1.21403 1.19791 1.21450 0.93706 0.99220 0.97810 1.21027 0.94444 0.97110 1.01481 0.91761 0.91941 0.92039 0.86869 0.86329 0.92670 0.90864 0.94177 0.89329 0.86365 0.95713 0.96093 0.92970 0.84730 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.10 -1.48 5.88 -104.62 -0.62 -2.10 16 3 C -0.13 -1.76 9.70 -39.59 -0.38 -2.15 16 4 C -0.12 -1.74 8.71 -39.59 -0.34 -2.08 16 5 C -0.07 -1.15 4.01 -104.62 -0.42 -1.57 16 6 C -0.02 -0.31 0.39 -155.66 -0.06 -0.37 16 7 C -0.12 -1.95 8.04 37.16 0.30 -1.65 16 8 C -0.01 -0.18 4.36 -29.52 -0.13 -0.31 16 9 C 0.23 4.56 13.40 -20.79 -0.28 4.28 16 10 N -0.46 -10.18 18.53 42.12 0.78 -9.40 16 11 C 0.03 0.70 2.45 -27.88 -0.07 0.63 16 12 C -0.52 -13.06 7.65 -34.44 -0.26 -13.33 16 13 H 0.06 1.44 5.68 -52.48 -0.30 1.14 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 20 C -0.10 -1.91 8.98 -39.58 -0.36 -2.27 16 21 C -0.12 -1.97 9.70 -39.58 -0.38 -2.35 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 24 H 0.06 0.58 8.09 -51.92 -0.42 0.16 16 25 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 26 H 0.12 1.45 7.10 -52.49 -0.37 1.08 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.20 6.62 -51.92 -0.34 0.85 16 29 H 0.04 0.51 7.38 -51.93 -0.38 0.13 16 30 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 31 H 0.12 1.92 6.61 -51.93 -0.34 1.57 16 32 H 0.02 0.62 7.52 -51.93 -0.39 0.23 16 33 H 0.02 0.55 6.59 -51.93 -0.34 0.21 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.13 2.75 5.90 -52.49 -0.31 2.44 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -30.15 299.09 -6.57 -36.72 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.83 Total: 0.17 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -2.74 Total: -22.56 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 1.52 Total: -34.51 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.15 -6.57 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075622047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.485 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds