Wall clock time and date at job start Mon Mar 30 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 120.00271 * 2 1 4 4 C 1.38230 * 119.99880 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00236 * 179.72466 * 5 4 3 7 7 C 1.52995 * 109.47064 * 59.99808 * 6 5 4 8 8 C 1.52999 * 109.46805 * 299.99784 * 6 5 4 9 9 C 1.47201 * 109.47130 * 300.00096 * 8 6 5 10 10 N 5.18640 * 138.76629 * 261.26694 * 2 1 3 11 11 C 1.53003 * 109.46956 * 180.02562 * 6 5 4 12 12 C 1.50702 * 109.46956 * 179.97438 * 11 6 5 13 13 H 1.08004 * 119.99792 * 359.97438 * 12 11 6 14 14 C 1.37875 * 120.00023 * 180.02562 * 12 11 6 15 15 N 1.31515 * 120.00109 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00007 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47229 * 89.99356 * 16 14 12 18 18 H 1.48496 * 109.47201 * 209.99646 * 16 14 12 19 19 H 1.48501 * 109.47274 * 329.99567 * 16 14 12 20 20 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 21 21 C 1.38234 * 119.99485 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47294 * 89.99327 * 1 2 3 23 23 H 1.09003 * 109.47421 * 209.99893 * 1 2 3 24 24 H 1.09009 * 109.46652 * 329.99537 * 1 2 3 25 25 H 1.08001 * 119.99769 * 359.97438 * 3 2 1 26 26 H 1.08000 * 120.00376 * 180.02562 * 4 3 2 27 27 H 1.08996 * 109.47239 * 60.00747 * 7 6 5 28 28 H 1.09007 * 109.46699 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.47299 * 299.99551 * 7 6 5 30 30 H 1.08996 * 109.47277 * 59.99986 * 8 6 5 31 31 H 1.08994 * 109.46996 * 180.02562 * 8 6 5 32 32 H 1.09001 * 109.46782 * 299.99106 * 11 6 5 33 33 H 1.09001 * 109.47400 * 59.99825 * 11 6 5 34 34 H 0.97001 * 119.99847 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.00299 * 179.97438 * 20 5 4 36 36 H 1.07997 * 120.00489 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0002 -0.0041 7 6 6.2934 0.7248 1.2409 8 6 6.2839 0.7171 -1.2575 9 6 5.7887 0.0195 -2.4553 10 7 5.4073 -0.5190 -3.3789 11 6 6.2886 -1.4428 -0.0022 12 6 7.7956 -1.4429 -0.0085 13 1 8.3356 -0.5076 -0.0138 14 6 8.4849 -2.6370 -0.0087 15 7 7.8273 -3.7759 -0.0027 16 14 10.3529 -2.6371 -0.0172 17 1 10.8543 -2.6334 1.3806 18 1 10.8446 -3.8514 -0.7163 19 1 10.8448 -1.4264 -0.7227 20 6 3.5805 -1.1973 0.0027 21 6 2.1981 -1.1972 0.0005 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 1.6582 2.1324 -0.0004 26 1 4.1207 2.1323 0.0010 27 1 5.9336 0.2138 2.1339 28 1 7.3835 0.7243 1.2370 29 1 5.9302 1.7525 1.2391 30 1 5.9207 1.7447 -1.2593 31 1 7.3739 0.7167 -1.2619 32 1 5.9287 -1.9542 0.8906 33 1 5.9219 -1.9590 -0.8894 34 1 8.3123 -4.6159 -0.0024 35 1 4.1204 -2.1326 0.0031 36 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075622047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:34 Heat of formation + Delta-G solvation = 10.760906 kcal Electronic energy + Delta-G solvation = -17192.138279 eV Core-core repulsion = 14639.662428 eV Total energy + Delta-G solvation = -2552.475851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.89654 -38.35500 -36.64668 -34.58462 -32.64166 -31.88042 -29.47403 -28.72847 -27.53195 -25.40653 -23.12341 -22.54491 -20.27725 -18.96527 -17.66009 -17.02843 -16.51553 -15.94260 -15.74634 -15.37693 -15.20837 -14.49636 -14.44643 -14.20319 -14.10326 -13.79356 -13.48925 -13.07096 -13.04948 -12.89558 -12.73230 -12.59911 -12.56840 -12.23473 -12.08183 -11.86811 -11.75019 -11.61948 -10.83781 -10.79089 -10.49700 -9.70881 -9.24565 -8.11755 -6.19658 0.55185 0.61141 1.44614 1.45613 1.54684 1.98042 2.04542 2.46176 2.95361 3.24417 3.36648 3.93453 4.00400 4.16862 4.25043 4.30410 4.44679 4.58216 4.67621 4.74498 4.86599 4.90271 4.98485 5.02549 5.06234 5.22349 5.27959 5.40503 5.42507 5.52646 5.62186 5.63934 5.76368 5.79178 5.91313 5.97221 6.26473 6.32304 6.83016 6.97872 7.49399 9.00892 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030151 B = 0.006525 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.423698 B = 4290.112170 C = 4413.116127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.123 4.123 4 C -0.113 4.113 5 C -0.083 4.083 6 C -0.010 4.010 7 C -0.118 4.118 8 C -0.012 4.012 9 C 0.244 3.756 10 N -0.514 5.514 11 C 0.043 3.957 12 C -0.514 4.514 13 H 0.087 0.913 14 C -0.006 4.006 15 N -0.942 5.942 16 Si 0.953 3.047 17 H -0.273 1.273 18 H -0.300 1.300 19 H -0.252 1.252 20 C -0.139 4.139 21 C -0.139 4.139 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.152 0.848 26 H 0.157 0.843 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.125 0.875 32 H -0.013 1.013 33 H -0.023 1.023 34 H 0.256 0.744 35 H 0.090 0.910 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 14.538 3.101 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.141 4.141 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.012 4.012 7 C -0.175 4.175 8 C -0.051 4.051 9 C -0.072 4.072 10 N -0.193 5.193 11 C 0.006 3.994 12 C -0.552 4.552 13 H 0.105 0.895 14 C -0.202 4.202 15 N -0.583 5.583 16 Si 0.779 3.221 17 H -0.199 1.199 18 H -0.226 1.226 19 H -0.176 1.176 20 C -0.157 4.157 21 C -0.157 4.157 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.170 0.830 26 H 0.175 0.825 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.163 0.837 31 H 0.143 0.857 32 H 0.005 0.995 33 H -0.005 1.005 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.525 13.569 1.712 16.667 hybrid contribution 1.164 -1.419 0.237 1.851 sum -8.361 12.150 1.949 14.877 Atomic orbital electron populations 1.20787 0.89308 1.03592 1.02709 1.20236 0.97493 0.92821 0.99919 1.21359 0.94187 0.98117 1.00439 1.21322 0.94495 0.97662 0.99547 1.20121 0.95569 0.93403 0.99228 1.19501 0.89599 0.96952 0.95127 1.21704 1.01998 0.99562 0.94204 1.19788 1.03436 0.98564 0.83297 1.29755 0.91345 0.92147 0.93934 1.81011 1.12150 1.11044 1.15078 1.19060 0.95238 0.91154 0.93917 1.21756 0.92296 0.92865 1.48319 0.89511 1.25949 1.03062 0.95645 0.95561 1.70142 1.37284 0.98015 1.52886 0.85617 0.80441 0.77744 0.78333 1.19866 1.22638 1.17560 1.21284 0.94965 0.98409 1.01016 1.21160 0.93621 0.98682 1.02236 0.90909 0.91536 0.89695 0.83042 0.82525 0.94289 0.91233 0.89575 0.83684 0.85675 0.99487 1.00456 0.93523 0.89181 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 10.01 71.24 0.71 -1.30 16 2 C -0.10 -2.77 5.88 -19.87 -0.12 -2.89 16 3 C -0.12 -2.91 9.70 22.27 0.22 -2.69 16 4 C -0.11 -2.87 8.71 22.27 0.19 -2.68 16 5 C -0.08 -2.81 4.01 -19.87 -0.08 -2.89 16 6 C -0.01 -0.36 0.39 -52.93 -0.02 -0.38 16 7 C -0.12 -3.40 8.04 71.98 0.58 -2.82 16 8 C -0.01 -0.35 4.36 28.79 0.13 -0.22 16 9 C 0.24 9.51 13.40 89.45 1.20 10.71 16 10 N -0.51 -23.14 18.53 19.99 0.37 -22.77 16 11 C 0.04 2.12 2.45 29.85 0.07 2.19 16 12 C -0.51 -26.17 7.65 25.60 0.20 -25.97 16 13 H 0.09 3.89 5.68 -2.91 -0.02 3.87 16 14 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 15 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 16 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 19 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 20 C -0.14 -5.42 8.98 22.27 0.20 -5.22 16 21 C -0.14 -4.59 9.70 22.27 0.22 -4.37 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 24 H 0.08 1.22 8.09 -2.38 -0.02 1.20 16 25 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 26 H 0.16 2.76 7.10 -2.91 -0.02 2.74 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 2.05 6.62 -2.38 -0.02 2.04 16 29 H 0.09 1.72 7.38 -2.39 -0.02 1.70 16 30 H 0.15 2.76 7.40 -2.39 -0.02 2.74 16 31 H 0.13 3.63 6.61 -2.39 -0.02 3.62 16 32 H -0.01 -0.74 7.52 -2.39 -0.02 -0.75 16 33 H -0.02 -1.31 6.59 -2.39 -0.02 -1.33 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.09 4.21 5.90 -2.91 -0.02 4.19 16 36 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -71.49 299.09 7.71 -63.78 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.07 Total: 9.89 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 3.96 Total: -38.37 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: 0.66 Total: -80.17 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -71.49 7.71 -63.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075622047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.542 kcal (2) G-P(sol) polarization free energy of solvation -71.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds