Wall clock time and date at job start Mon Mar 30 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 C 1.50700 * 120.00255 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46838 * 299.99364 * 6 5 4 8 8 C 1.52997 * 109.47305 * 59.99519 * 6 5 4 9 9 C 1.47197 * 109.47196 * 60.00430 * 8 6 5 10 10 N 5.19104 * 138.69503 * 98.66522 * 2 1 3 11 11 C 1.53002 * 109.47345 * 179.97438 * 6 5 4 12 12 C 1.50700 * 109.47348 * 179.97438 * 11 6 5 13 13 H 1.08004 * 119.99508 * 359.97438 * 12 11 6 14 14 C 1.37875 * 120.00059 * 179.97438 * 12 11 6 15 15 N 1.31513 * 120.00041 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00024 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47295 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47094 * 119.99985 * 16 14 12 19 19 H 1.48499 * 109.47361 * 240.00046 * 16 14 12 20 20 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 21 21 C 1.38234 * 120.00048 * 0.02876 * 20 5 4 22 22 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 23 23 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 24 24 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 25 25 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 27 27 H 1.08996 * 109.46514 * 59.99984 * 7 6 5 28 28 H 1.08996 * 109.46969 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47250 * 300.00224 * 7 6 5 30 30 H 1.09005 * 109.47191 * 180.02562 * 8 6 5 31 31 H 1.08998 * 109.46991 * 299.99968 * 8 6 5 32 32 H 1.09005 * 109.46751 * 299.99885 * 11 6 5 33 33 H 1.09001 * 109.47123 * 59.99543 * 11 6 5 34 34 H 0.97001 * 120.00302 * 179.97438 * 15 14 12 35 35 H 1.08001 * 119.99657 * 180.02562 * 20 5 4 36 36 H 1.08004 * 119.99527 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 6 5.7787 -0.0001 0.0112 7 6 6.2934 0.7240 -1.2345 8 6 6.2840 0.7182 1.2640 9 6 5.7889 0.0216 2.4624 10 7 5.4065 -0.5162 3.3873 11 6 6.2887 -1.4426 0.0104 12 6 7.7957 -1.4427 0.0154 13 1 8.3356 -0.5073 0.0185 14 6 8.4850 -2.6367 0.0162 15 7 7.8275 -3.7756 0.0119 16 14 10.3530 -2.6367 0.0217 17 1 10.8480 -1.2367 0.0254 18 1 10.8444 -3.3382 1.2350 19 1 10.8516 -3.3354 -1.1901 20 6 3.5805 -1.1972 0.0006 21 6 2.1981 -1.1972 -0.0046 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5139 25 1 1.6582 2.1325 0.0004 26 1 4.1205 2.1324 0.0100 27 1 5.9300 1.7516 -1.2334 28 1 7.3833 0.7236 -1.2306 29 1 5.9333 0.2122 -2.1270 30 1 7.3740 0.7186 1.2679 31 1 5.9207 1.7459 1.2650 32 1 5.9220 -1.9581 0.8981 33 1 5.9287 -1.9548 -0.8819 34 1 8.3124 -4.6157 0.0121 35 1 4.1205 -2.1325 0.0009 36 1 1.6582 -2.1325 -0.0089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075622051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:37 Heat of formation + Delta-G solvation = 26.617402 kcal Electronic energy + Delta-G solvation = -17190.440543 eV Core-core repulsion = 14638.652281 eV Total energy + Delta-G solvation = -2551.788262 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60585 -36.96149 -35.03667 -32.69087 -31.40753 -30.64418 -27.87182 -27.18179 -26.41194 -23.67833 -21.85929 -21.22052 -18.85952 -17.29155 -16.01814 -15.58893 -14.94844 -14.57068 -14.30129 -13.96672 -13.81921 -13.48552 -13.04515 -12.84950 -12.59605 -12.14815 -12.01133 -11.88949 -11.65415 -11.46792 -11.33744 -10.99342 -10.87108 -10.80645 -10.68611 -10.31983 -10.19212 -10.11600 -9.21872 -8.97333 -8.51467 -8.39271 -8.05810 -6.04461 -4.06853 1.74232 1.82792 3.28768 3.37346 3.38315 3.52608 3.57976 4.16164 4.41633 4.78301 5.09176 5.13329 5.31225 5.32357 5.42388 5.47754 5.66567 5.70456 5.77940 5.89375 5.91252 6.05270 6.11340 6.18828 6.32582 6.42491 6.50661 6.60246 6.79819 6.84223 6.95168 6.98805 7.24399 7.45638 7.57490 7.65544 7.92259 8.32064 8.35843 8.97706 9.57513 11.06952 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030124 B = 0.006525 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.272060 B = 4290.013611 C = 4414.146636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.067 4.067 6 C -0.017 4.017 7 C -0.123 4.123 8 C -0.011 4.011 9 C 0.230 3.770 10 N -0.461 5.461 11 C 0.030 3.970 12 C -0.519 4.519 13 H 0.062 0.938 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.887 3.113 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.104 4.104 21 C -0.123 4.123 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.021 0.979 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.135 0.865 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 10.333 -2.656 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.145 4.145 4 C -0.136 4.136 5 C -0.067 4.067 6 C -0.019 4.019 7 C -0.180 4.180 8 C -0.050 4.050 9 C -0.087 4.087 10 N -0.139 5.139 11 C -0.007 4.007 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.715 3.285 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.122 4.122 21 C -0.141 4.141 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.131 0.869 26 H 0.137 0.863 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.039 0.961 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.290 9.343 -1.262 13.237 hybrid contribution 1.194 -0.097 -0.367 1.253 sum -8.096 9.247 -1.629 12.398 Atomic orbital electron populations 1.20725 0.91933 1.02187 1.01742 1.19806 0.95511 0.93463 1.01590 1.20870 0.94230 0.96947 1.02469 1.20977 0.93832 0.97725 1.01067 1.20149 0.96065 0.92742 0.97723 1.19665 0.88730 1.00498 0.92970 1.21738 1.02328 0.97569 0.96378 1.19453 1.03051 0.96472 0.86074 1.29037 0.92558 0.93137 0.93925 1.81064 1.10371 1.09468 1.12975 1.19305 0.96006 0.87641 0.97753 1.21224 0.91231 0.92297 1.50921 0.91963 1.24989 0.98176 0.95761 0.95265 1.69959 1.35337 0.97320 1.50437 0.86617 0.86148 0.78184 0.77555 1.19573 1.21194 1.21078 1.21449 0.93706 0.99220 0.97811 1.21026 0.94443 0.97112 1.01481 0.91694 0.91975 0.92076 0.86870 0.86330 0.94180 0.90851 0.92673 0.86364 0.89326 0.96091 0.95706 0.93025 0.84729 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 2 C -0.10 -1.48 5.88 -104.63 -0.62 -2.10 16 3 C -0.13 -1.76 9.70 -39.58 -0.38 -2.15 16 4 C -0.12 -1.74 8.71 -39.58 -0.34 -2.08 16 5 C -0.07 -1.15 4.01 -104.62 -0.42 -1.57 16 6 C -0.02 -0.31 0.39 -155.66 -0.06 -0.37 16 7 C -0.12 -1.95 8.04 37.16 0.30 -1.65 16 8 C -0.01 -0.17 4.36 -29.52 -0.13 -0.30 16 9 C 0.23 4.55 13.40 -20.76 -0.28 4.27 16 10 N -0.46 -10.18 18.54 42.16 0.78 -9.40 16 11 C 0.03 0.69 2.45 -27.88 -0.07 0.63 16 12 C -0.52 -13.04 7.65 -34.44 -0.26 -13.30 16 13 H 0.06 1.45 5.68 -52.48 -0.30 1.16 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.10 -1.91 8.98 -39.58 -0.36 -2.27 16 21 C -0.12 -1.97 9.70 -39.58 -0.38 -2.35 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 26 H 0.12 1.45 7.10 -52.49 -0.37 1.08 16 27 H 0.04 0.51 7.39 -51.93 -0.38 0.13 16 28 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.12 1.91 6.62 -51.93 -0.34 1.57 16 31 H 0.09 1.11 7.39 -51.93 -0.38 0.72 16 32 H 0.02 0.55 6.60 -51.93 -0.34 0.21 16 33 H 0.02 0.63 7.51 -51.93 -0.39 0.24 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.13 2.75 5.90 -52.49 -0.31 2.44 16 36 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 299.11 15.07 4.51 4.51 Total: -1.00 -30.18 299.11 -6.57 -36.75 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.83 Total: 0.14 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -2.74 Total: -22.56 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 1.52 Total: -34.50 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.18 -6.57 -36.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075622051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.371 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds