Wall clock time and date at job start Mon Mar 30 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 C 1.50700 * 120.00255 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46838 * 299.99364 * 6 5 4 8 8 C 1.52997 * 109.47305 * 59.99519 * 6 5 4 9 9 C 1.47197 * 109.47196 * 60.00430 * 8 6 5 10 10 N 5.19104 * 138.69503 * 98.66522 * 2 1 3 11 11 C 1.53002 * 109.47345 * 179.97438 * 6 5 4 12 12 C 1.50700 * 109.47348 * 179.97438 * 11 6 5 13 13 H 1.08004 * 119.99508 * 359.97438 * 12 11 6 14 14 C 1.37875 * 120.00059 * 179.97438 * 12 11 6 15 15 N 1.31513 * 120.00041 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00024 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47295 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47094 * 119.99985 * 16 14 12 19 19 H 1.48499 * 109.47361 * 240.00046 * 16 14 12 20 20 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 21 21 C 1.38234 * 120.00048 * 0.02876 * 20 5 4 22 22 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 23 23 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 24 24 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 25 25 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 27 27 H 1.08996 * 109.46514 * 59.99984 * 7 6 5 28 28 H 1.08996 * 109.46969 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47250 * 300.00224 * 7 6 5 30 30 H 1.09005 * 109.47191 * 180.02562 * 8 6 5 31 31 H 1.08998 * 109.46991 * 299.99968 * 8 6 5 32 32 H 1.09005 * 109.46751 * 299.99885 * 11 6 5 33 33 H 1.09001 * 109.47123 * 59.99543 * 11 6 5 34 34 H 0.97001 * 120.00302 * 179.97438 * 15 14 12 35 35 H 1.08001 * 119.99657 * 180.02562 * 20 5 4 36 36 H 1.08004 * 119.99527 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 6 5.7787 -0.0001 0.0112 7 6 6.2934 0.7240 -1.2345 8 6 6.2840 0.7182 1.2640 9 6 5.7889 0.0216 2.4624 10 7 5.4065 -0.5162 3.3873 11 6 6.2887 -1.4426 0.0104 12 6 7.7957 -1.4427 0.0154 13 1 8.3356 -0.5073 0.0185 14 6 8.4850 -2.6367 0.0162 15 7 7.8275 -3.7756 0.0119 16 14 10.3530 -2.6367 0.0217 17 1 10.8480 -1.2367 0.0254 18 1 10.8444 -3.3382 1.2350 19 1 10.8516 -3.3354 -1.1901 20 6 3.5805 -1.1972 0.0006 21 6 2.1981 -1.1972 -0.0046 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5139 25 1 1.6582 2.1325 0.0004 26 1 4.1205 2.1324 0.0100 27 1 5.9300 1.7516 -1.2334 28 1 7.3833 0.7236 -1.2306 29 1 5.9333 0.2122 -2.1270 30 1 7.3740 0.7186 1.2679 31 1 5.9207 1.7459 1.2650 32 1 5.9220 -1.9581 0.8981 33 1 5.9287 -1.9548 -0.8819 34 1 8.3124 -4.6157 0.0121 35 1 4.1205 -2.1325 0.0009 36 1 1.6582 -2.1325 -0.0089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075622051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:37 Heat of formation + Delta-G solvation = 10.570030 kcal Electronic energy + Delta-G solvation = -17191.136409 eV Core-core repulsion = 14638.652281 eV Total energy + Delta-G solvation = -2552.484128 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89489 -38.34846 -36.62962 -34.58529 -32.64187 -31.88004 -29.47470 -28.72688 -27.53206 -25.40855 -23.12353 -22.54508 -20.27753 -18.96647 -17.66346 -17.02912 -16.51428 -15.93995 -15.73874 -15.38411 -15.20081 -14.51753 -14.43147 -14.19001 -14.10311 -13.79458 -13.48604 -13.07835 -13.06164 -12.88855 -12.75681 -12.62348 -12.52819 -12.22713 -12.07217 -11.86661 -11.73958 -11.61601 -10.83162 -10.78542 -10.51344 -9.70865 -9.24398 -8.11985 -6.19778 0.55248 0.61169 1.43382 1.45317 1.55986 1.97500 2.04010 2.46045 2.95387 3.24401 3.36543 3.93506 4.00334 4.16849 4.24998 4.30342 4.44739 4.58017 4.67483 4.74500 4.87553 4.90091 4.98411 5.02660 5.06318 5.22405 5.27980 5.40530 5.42575 5.52796 5.62262 5.64021 5.76340 5.79140 5.91384 5.97264 6.26486 6.32329 6.83095 6.98037 7.49307 9.00906 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030124 B = 0.006525 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.272060 B = 4290.013611 C = 4414.146636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.123 4.123 4 C -0.113 4.113 5 C -0.083 4.083 6 C -0.010 4.010 7 C -0.117 4.117 8 C -0.012 4.012 9 C 0.244 3.756 10 N -0.515 5.515 11 C 0.043 3.957 12 C -0.513 4.513 13 H 0.088 0.912 14 C -0.006 4.006 15 N -0.942 5.942 16 Si 0.952 3.048 17 H -0.244 1.244 18 H -0.295 1.295 19 H -0.286 1.286 20 C -0.138 4.138 21 C -0.139 4.139 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.152 0.848 26 H 0.157 0.843 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.126 0.874 31 H 0.146 0.854 32 H -0.023 1.023 33 H -0.013 1.013 34 H 0.256 0.744 35 H 0.090 0.910 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 14.592 -3.182 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.141 4.141 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.012 4.012 7 C -0.175 4.175 8 C -0.051 4.051 9 C -0.072 4.072 10 N -0.193 5.193 11 C 0.006 3.994 12 C -0.551 4.551 13 H 0.105 0.895 14 C -0.203 4.203 15 N -0.584 5.584 16 Si 0.778 3.222 17 H -0.167 1.167 18 H -0.222 1.222 19 H -0.213 1.213 20 C -0.157 4.157 21 C -0.157 4.157 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.170 0.830 26 H 0.175 0.825 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.144 0.856 31 H 0.163 0.837 32 H -0.005 1.005 33 H 0.005 0.995 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.530 13.631 -1.794 16.729 hybrid contribution 1.160 -1.446 -0.233 1.868 sum -8.371 12.185 -2.027 14.921 Atomic orbital electron populations 1.20785 0.89312 1.03301 1.03001 1.20235 0.97492 0.92821 0.99912 1.21358 0.94187 0.98113 1.00451 1.21323 0.94493 0.97662 0.99542 1.20122 0.95574 0.93401 0.99235 1.19503 0.89592 0.96944 0.95137 1.21704 1.01995 0.99562 0.94193 1.19788 1.03466 0.98568 0.83263 1.29801 0.91329 0.92123 0.93931 1.81060 1.12156 1.11059 1.15047 1.19067 0.95263 0.91162 0.93923 1.21790 0.92286 0.92874 1.48138 0.89457 1.25950 1.03055 0.95662 0.95593 1.70146 1.37221 0.98030 1.52974 0.85575 0.80495 0.79343 0.76759 1.16685 1.22164 1.21261 1.21283 0.94964 0.98410 1.01015 1.21157 0.93619 0.98679 1.02248 0.90232 0.91886 0.90010 0.83049 0.82524 0.89584 0.91229 0.94282 0.85636 0.83676 1.00465 0.99471 0.93526 0.89182 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 10.01 71.23 0.71 -1.30 16 2 C -0.10 -2.76 5.88 -19.87 -0.12 -2.88 16 3 C -0.12 -2.91 9.70 22.27 0.22 -2.69 16 4 C -0.11 -2.87 8.71 22.27 0.19 -2.67 16 5 C -0.08 -2.81 4.01 -19.87 -0.08 -2.89 16 6 C -0.01 -0.36 0.39 -52.93 -0.02 -0.38 16 7 C -0.12 -3.39 8.04 71.98 0.58 -2.81 16 8 C -0.01 -0.35 4.36 28.79 0.13 -0.22 16 9 C 0.24 9.50 13.40 89.44 1.20 10.70 16 10 N -0.51 -23.16 18.54 20.01 0.37 -22.79 16 11 C 0.04 2.10 2.45 29.85 0.07 2.17 16 12 C -0.51 -26.06 7.65 25.60 0.20 -25.86 16 13 H 0.09 3.91 5.68 -2.91 -0.02 3.89 16 14 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 15 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 16 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 17 H -0.24 -9.81 7.11 99.48 0.71 -9.10 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 20 C -0.14 -5.42 8.98 22.27 0.20 -5.22 16 21 C -0.14 -4.59 9.70 22.27 0.22 -4.37 16 22 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.06 1.17 8.09 -2.39 -0.02 1.15 16 24 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 25 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 26 H 0.16 2.75 7.10 -2.91 -0.02 2.73 16 27 H 0.09 1.71 7.39 -2.39 -0.02 1.69 16 28 H 0.07 2.05 6.62 -2.39 -0.02 2.04 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.13 3.62 6.62 -2.38 -0.02 3.61 16 31 H 0.15 2.75 7.39 -2.39 -0.02 2.73 16 32 H -0.02 -1.32 6.60 -2.38 -0.02 -1.33 16 33 H -0.01 -0.73 7.51 -2.39 -0.02 -0.74 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.09 4.21 5.90 -2.91 -0.02 4.19 16 36 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -71.61 299.11 7.71 -63.91 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.07 Total: 9.75 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 3.96 Total: -38.31 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: 0.66 Total: -80.21 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -71.61 7.71 -63.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075622051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.476 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds