Wall clock time and date at job start Mon Mar 30 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36832 * 125.03105 * 2 1 4 4 H 0.97000 * 125.06429 * 359.97438 * 3 2 1 5 5 C 1.37690 * 109.87515 * 179.97438 * 3 2 1 6 6 C 1.40704 * 107.15258 * 359.74933 * 5 3 2 7 7 C 1.39592 * 119.92570 * 179.67119 * 6 5 3 8 8 C 1.36665 * 119.76227 * 0.58935 * 7 6 5 9 9 C 1.38784 * 120.53134 * 359.68002 * 8 7 6 10 10 C 1.50700 * 119.66593 * 179.97438 * 9 8 7 11 11 C 1.37786 * 120.66429 * 0.02682 * 9 8 7 12 12 C 1.50700 * 120.11096 * 179.97438 * 11 9 8 13 13 C 1.34232 * 125.03080 * 179.97438 * 2 1 3 14 14 C 1.50703 * 126.50077 * 0.02562 * 13 2 1 15 15 C 1.50701 * 109.47064 * 90.01973 * 14 13 2 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 H 1.08997 * 109.47323 * 270.03316 * 1 2 3 24 24 H 1.09003 * 109.46929 * 30.03206 * 1 2 3 25 25 H 1.09000 * 109.46975 * 150.03037 * 1 2 3 26 26 H 1.08004 * 120.11758 * 180.29992 * 7 6 5 27 27 H 1.08005 * 119.73362 * 179.70296 * 8 7 6 28 28 H 1.09003 * 109.46974 * 270.02121 * 10 9 8 29 29 H 1.08997 * 109.47530 * 30.02525 * 10 9 8 30 30 H 1.09006 * 109.47001 * 150.02490 * 10 9 8 31 31 H 1.09004 * 109.47071 * 270.01996 * 12 11 9 32 32 H 1.08996 * 109.47322 * 30.01602 * 12 11 9 33 33 H 1.08999 * 109.47264 * 150.01754 * 12 11 9 34 34 H 1.09002 * 109.47152 * 330.02065 * 14 13 2 35 35 H 1.09001 * 109.46980 * 210.02166 * 14 13 2 36 36 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9622 2.0325 -0.0004 5 6 3.6215 0.7605 0.0006 6 6 3.6705 -0.6457 0.0068 7 6 4.9038 -1.2996 0.0019 8 6 6.0589 -0.5692 0.0031 9 6 6.0159 0.8180 0.0026 10 6 7.3016 1.6041 0.0046 11 6 4.8095 1.4837 0.0014 12 6 4.7774 2.9903 0.0015 13 6 2.2775 -1.0991 0.0005 14 6 1.8001 -2.5286 0.0006 15 6 1.6420 -3.0054 -1.4202 16 1 1.8653 -2.3402 -2.2411 17 6 1.2133 -4.2915 -1.6720 18 7 0.9418 -5.1017 -0.6724 19 14 1.0179 -4.8827 -3.4332 20 1 2.3255 -4.7973 -4.1320 21 1 0.5474 -6.2913 -3.4331 22 1 0.0251 -4.0297 -4.1346 23 1 -0.3634 0.0006 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8903 -0.5134 26 1 4.9450 -2.3788 0.0018 27 1 7.0129 -1.0755 0.0041 28 1 7.6100 1.7936 1.0328 29 1 8.0767 1.0344 -0.5080 30 1 7.1481 2.5530 -0.5094 31 1 4.7689 3.3535 1.0292 32 1 5.6597 3.3726 -0.5116 33 1 3.8802 3.3346 -0.5130 34 1 0.8405 -2.5911 0.5138 35 1 2.5288 -3.1549 0.5152 36 1 0.6399 -6.0063 -0.8496 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082372469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:34 Heat of formation + Delta-G solvation = 29.741424 kcal Electronic energy + Delta-G solvation = -17011.028733 eV Core-core repulsion = 14459.375939 eV Total energy + Delta-G solvation = -2551.652794 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75622 -37.28053 -33.65958 -32.72773 -31.49532 -30.33314 -28.70202 -27.03443 -26.06987 -24.46910 -22.72112 -21.33590 -19.66448 -17.97627 -16.90499 -16.16450 -15.45733 -14.85253 -14.45112 -14.42068 -13.65038 -13.49187 -12.98102 -12.71304 -12.61504 -12.22348 -12.16064 -12.09823 -11.81625 -11.67418 -11.49892 -11.17192 -10.85054 -10.71492 -10.54788 -10.42848 -10.08776 -9.59871 -9.37770 -8.49879 -8.32285 -7.46400 -6.72466 -5.92628 -3.96582 1.66981 2.18426 3.36685 3.39562 3.41228 3.49385 3.69519 4.42438 4.55152 5.07721 5.23377 5.33031 5.38822 5.41205 5.46080 5.59289 5.65874 5.80075 5.84754 5.90611 6.01267 6.03779 6.09702 6.17625 6.29080 6.50449 6.60314 6.67171 6.86040 7.06717 7.17711 7.45196 7.53746 7.65480 7.80278 8.00674 8.02885 8.22234 8.48822 9.08755 9.66441 11.15271 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.006659 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.584867 B = 4203.955832 C = 4807.155336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.036 3.964 3 N -0.599 5.599 4 H 0.403 0.597 5 C 0.101 3.899 6 C -0.101 4.101 7 C -0.054 4.054 8 C -0.160 4.160 9 C -0.079 4.079 10 C -0.108 4.108 11 C -0.113 4.113 12 C -0.106 4.106 13 C -0.105 4.105 14 C 0.082 3.918 15 C -0.503 4.503 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.244 13.911 2.309 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 N -0.203 5.203 4 H 0.238 0.762 5 C -0.007 4.007 6 C -0.106 4.106 7 C -0.072 4.072 8 C -0.179 4.179 9 C -0.080 4.080 10 C -0.164 4.164 11 C -0.116 4.116 12 C -0.163 4.163 13 C -0.111 4.111 14 C 0.045 3.955 15 C -0.542 4.542 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.141 0.859 27 H 0.132 0.868 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.074 13.814 2.346 15.272 hybrid contribution -0.276 -0.004 -1.036 1.073 sum 5.798 13.810 1.310 15.035 Atomic orbital electron populations 1.20336 0.88304 1.03341 1.01955 1.20013 0.93114 0.85131 1.08570 1.41537 1.03795 1.07575 1.67409 0.76195 1.17964 0.84190 0.94091 1.04454 1.19268 0.94037 0.91404 1.05937 1.20361 0.90488 0.99890 0.96488 1.20355 0.97704 0.92933 1.06930 1.19225 0.93281 0.93649 1.01864 1.20760 0.94610 0.99455 1.01623 1.18459 0.90011 0.94372 1.08740 1.20669 1.01924 0.92286 1.01408 1.21006 0.89319 0.96827 1.03955 1.17700 0.96128 0.84640 0.97063 1.21082 1.44073 0.97108 0.91921 0.92814 1.24987 0.95720 0.96780 0.96844 1.69946 1.46172 1.06971 1.30538 0.86681 0.78524 0.77608 0.85343 1.20286 1.21329 1.20338 0.91780 0.92862 0.88709 0.85894 0.86802 0.91807 0.91986 0.91821 0.92039 0.91349 0.92986 0.95532 0.95657 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.98 36.01 0.36 -1.00 16 2 C 0.04 0.70 7.08 -81.77 -0.58 0.12 16 3 N -0.60 -10.24 6.07 -6.95 -0.04 -10.29 16 4 H 0.40 5.38 8.87 -40.82 -0.36 5.02 16 5 C 0.10 1.89 6.95 -83.99 -0.58 1.31 16 6 C -0.10 -2.19 6.35 -105.14 -0.67 -2.86 16 7 C -0.05 -1.07 10.05 -39.65 -0.40 -1.47 16 8 C -0.16 -2.69 9.61 -39.95 -0.38 -3.07 16 9 C -0.08 -1.22 5.88 -104.59 -0.61 -1.84 16 10 C -0.11 -1.22 9.58 36.01 0.35 -0.88 16 11 C -0.11 -1.81 5.89 -104.47 -0.62 -2.42 16 12 C -0.11 -1.27 9.60 36.01 0.35 -0.92 16 13 C -0.11 -2.42 5.50 -102.71 -0.57 -2.99 16 14 C 0.08 2.17 5.05 -29.03 -0.15 2.02 16 15 C -0.50 -14.30 9.09 -34.44 -0.31 -14.62 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 19 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 1.78 7.66 -51.93 -0.40 1.38 16 26 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 27 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.06 0.64 5.91 -51.93 -0.31 0.33 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.71 5.92 -51.93 -0.31 0.40 16 33 H 0.05 0.58 7.99 -51.93 -0.42 0.17 16 34 H 0.03 0.72 7.69 -51.93 -0.40 0.32 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 301.29 15.07 4.54 4.54 Total: -1.00 -31.48 301.29 -8.81 -40.29 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.11 Total: 1.61 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -3.92 Total: -27.06 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.69 Total: -36.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.48 -8.81 -40.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082372469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.027 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds