Wall clock time and date at job start Mon Mar 30 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36832 * 125.03105 * 2 1 4 4 H 0.97000 * 125.06429 * 359.97438 * 3 2 1 5 5 C 1.37690 * 109.87515 * 179.97438 * 3 2 1 6 6 C 1.40704 * 107.15258 * 359.74933 * 5 3 2 7 7 C 1.39592 * 119.92570 * 179.67119 * 6 5 3 8 8 C 1.36665 * 119.76227 * 0.58935 * 7 6 5 9 9 C 1.38784 * 120.53134 * 359.68002 * 8 7 6 10 10 C 1.50700 * 119.66593 * 179.97438 * 9 8 7 11 11 C 1.37786 * 120.66429 * 0.02682 * 9 8 7 12 12 C 1.50700 * 120.11096 * 179.97438 * 11 9 8 13 13 C 1.34232 * 125.03080 * 179.97438 * 2 1 3 14 14 C 1.50703 * 126.50077 * 0.02562 * 13 2 1 15 15 C 1.50701 * 109.47064 * 90.01973 * 14 13 2 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 H 1.08997 * 109.47323 * 270.03316 * 1 2 3 24 24 H 1.09003 * 109.46929 * 30.03206 * 1 2 3 25 25 H 1.09000 * 109.46975 * 150.03037 * 1 2 3 26 26 H 1.08004 * 120.11758 * 180.29992 * 7 6 5 27 27 H 1.08005 * 119.73362 * 179.70296 * 8 7 6 28 28 H 1.09003 * 109.46974 * 270.02121 * 10 9 8 29 29 H 1.08997 * 109.47530 * 30.02525 * 10 9 8 30 30 H 1.09006 * 109.47001 * 150.02490 * 10 9 8 31 31 H 1.09004 * 109.47071 * 270.01996 * 12 11 9 32 32 H 1.08996 * 109.47322 * 30.01602 * 12 11 9 33 33 H 1.08999 * 109.47264 * 150.01754 * 12 11 9 34 34 H 1.09002 * 109.47152 * 330.02065 * 14 13 2 35 35 H 1.09001 * 109.46980 * 210.02166 * 14 13 2 36 36 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9622 2.0325 -0.0004 5 6 3.6215 0.7605 0.0006 6 6 3.6705 -0.6457 0.0068 7 6 4.9038 -1.2996 0.0019 8 6 6.0589 -0.5692 0.0031 9 6 6.0159 0.8180 0.0026 10 6 7.3016 1.6041 0.0046 11 6 4.8095 1.4837 0.0014 12 6 4.7774 2.9903 0.0015 13 6 2.2775 -1.0991 0.0005 14 6 1.8001 -2.5286 0.0006 15 6 1.6420 -3.0054 -1.4202 16 1 1.8653 -2.3402 -2.2411 17 6 1.2133 -4.2915 -1.6720 18 7 0.9418 -5.1017 -0.6724 19 14 1.0179 -4.8827 -3.4332 20 1 2.3255 -4.7973 -4.1320 21 1 0.5474 -6.2913 -3.4331 22 1 0.0251 -4.0297 -4.1346 23 1 -0.3634 0.0006 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8903 -0.5134 26 1 4.9450 -2.3788 0.0018 27 1 7.0129 -1.0755 0.0041 28 1 7.6100 1.7936 1.0328 29 1 8.0767 1.0344 -0.5080 30 1 7.1481 2.5530 -0.5094 31 1 4.7689 3.3535 1.0292 32 1 5.6597 3.3726 -0.5116 33 1 3.8802 3.3346 -0.5130 34 1 0.8405 -2.5911 0.5138 35 1 2.5288 -3.1549 0.5152 36 1 0.6399 -6.0063 -0.8496 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082372469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:34 Heat of formation + Delta-G solvation = 12.023702 kcal Electronic energy + Delta-G solvation = -17011.797031 eV Core-core repulsion = 14459.375939 eV Total energy + Delta-G solvation = -2552.421092 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.19787 -38.60312 -35.57011 -34.27823 -32.99162 -31.86354 -29.99132 -28.80409 -27.28271 -25.90364 -24.68992 -22.68294 -21.01029 -19.62910 -18.41634 -18.26131 -16.86330 -16.48590 -16.08031 -15.78900 -14.93470 -14.70096 -14.36799 -14.25331 -14.06403 -13.71493 -13.56776 -13.38659 -13.30778 -13.08072 -12.82785 -12.64249 -12.58400 -12.37250 -12.02589 -11.85946 -11.83237 -11.58104 -11.30414 -10.55518 -9.98094 -8.86714 -8.35891 -8.01906 -6.26865 0.27925 0.78866 1.37909 1.41238 1.49227 1.88612 2.31592 2.43776 3.02205 3.14427 3.89360 3.99912 4.09094 4.25543 4.33481 4.43911 4.53141 4.64498 4.75918 4.79216 4.79920 4.89624 4.95055 5.03988 5.07170 5.18503 5.19584 5.33016 5.38490 5.43648 5.59660 5.75409 5.82107 5.84255 6.00590 6.13413 6.30576 6.41470 6.83813 6.90962 7.40698 8.94015 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.006659 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.584867 B = 4203.955832 C = 4807.155336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.581 5.581 4 H 0.424 0.576 5 C 0.090 3.910 6 C -0.139 4.139 7 C -0.095 4.095 8 C -0.150 4.150 9 C -0.082 4.082 10 C -0.104 4.104 11 C -0.109 4.109 12 C -0.104 4.104 13 C -0.167 4.167 14 C 0.099 3.901 15 C -0.517 4.517 16 H 0.044 0.956 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.266 1.266 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.006 0.994 35 H -0.014 1.014 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 17.177 1.356 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 N -0.187 5.187 4 H 0.264 0.736 5 C -0.017 4.017 6 C -0.144 4.144 7 C -0.114 4.114 8 C -0.169 4.169 9 C -0.083 4.083 10 C -0.160 4.160 11 C -0.111 4.111 12 C -0.160 4.160 13 C -0.174 4.174 14 C 0.062 3.938 15 C -0.556 4.556 16 H 0.063 0.937 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.784 3.216 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.190 1.190 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.155 0.845 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.025 0.975 35 H 0.005 0.995 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.073 17.124 1.396 18.580 hybrid contribution -0.505 -0.963 -0.678 1.281 sum 6.568 16.161 0.718 17.459 Atomic orbital electron populations 1.20383 0.86217 1.03759 1.03331 1.20262 0.94342 0.85042 1.05388 1.41376 1.03042 1.07932 1.66333 0.73612 1.18230 0.85563 0.93029 1.04928 1.19501 0.93698 0.93509 1.07701 1.20381 0.91810 0.99140 1.00053 1.20687 0.97343 0.94084 1.04794 1.19780 0.95279 0.93219 1.00066 1.20840 0.92274 0.99758 1.03176 1.19019 0.88867 0.96876 1.06381 1.20769 1.03588 0.88703 1.02987 1.20755 0.91431 0.95883 1.09313 1.17293 0.93914 0.87058 0.95546 1.21313 1.44156 0.97494 0.92602 0.93732 1.25864 0.95131 0.96771 1.01425 1.70075 1.46802 1.07360 1.32880 0.85590 0.78707 0.77480 0.79813 1.19953 1.20322 1.19046 0.89880 0.89042 0.91546 0.88438 0.84460 0.90092 0.90863 0.89769 0.90304 0.89037 0.92063 0.97534 0.99528 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.59 9.98 71.24 0.71 -1.87 16 2 C 0.06 2.22 7.08 40.86 0.29 2.51 16 3 N -0.58 -19.02 6.07 -175.91 -1.07 -20.09 16 4 H 0.42 10.01 8.87 -92.71 -0.82 9.19 16 5 C 0.09 3.32 6.95 39.03 0.27 3.59 16 6 C -0.14 -6.31 6.35 -20.20 -0.13 -6.44 16 7 C -0.10 -4.05 10.05 22.23 0.22 -3.83 16 8 C -0.15 -5.00 9.61 22.03 0.21 -4.79 16 9 C -0.08 -2.33 5.88 -19.84 -0.12 -2.44 16 10 C -0.10 -1.89 9.58 71.24 0.68 -1.21 16 11 C -0.11 -3.18 5.89 -19.77 -0.12 -3.30 16 12 C -0.10 -1.99 9.60 71.24 0.68 -1.31 16 13 C -0.17 -8.20 5.50 -18.63 -0.10 -8.30 16 14 C 0.10 5.71 5.05 29.10 0.15 5.85 16 15 C -0.52 -31.12 9.09 25.60 0.23 -30.89 16 16 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 17 C 0.01 0.34 5.46 84.66 0.46 0.80 16 18 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 19 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 20 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.07 2.56 7.66 -2.39 -0.02 2.55 16 26 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 27 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 30 H 0.08 1.21 5.91 -2.38 -0.01 1.20 16 31 H 0.08 1.30 8.14 -2.38 -0.02 1.29 16 32 H 0.09 1.36 5.92 -2.39 -0.01 1.35 16 33 H 0.06 1.08 7.99 -2.39 -0.02 1.06 16 34 H 0.01 0.38 7.69 -2.39 -0.02 0.36 16 35 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -73.35 301.29 4.95 -68.40 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.26 Total: 12.88 kcal Atomic # 6 Polarization: -55.07 SS G_CDS: 3.45 Total: -51.62 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -0.78 Total: -77.57 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -73.35 4.95 -68.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082372469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.420 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds