Wall clock time and date at job start Mon Mar 30 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.36835 * 125.02885 * 2 1 4 4 H 0.96996 * 125.06532 * 359.97438 * 3 2 1 5 5 C 1.37696 * 109.87582 * 179.72147 * 3 2 1 6 6 C 1.40708 * 107.14609 * 0.37739 * 5 3 2 7 7 C 1.39596 * 119.92633 * 179.82287 * 6 5 3 8 8 C 1.36661 * 119.76460 * 359.74518 * 7 6 5 9 9 C 1.50701 * 119.73733 * 179.97438 * 8 7 6 10 10 C 1.38787 * 120.52852 * 0.02562 * 8 7 6 11 11 C 1.37793 * 120.66535 * 359.97438 * 10 8 7 12 12 C 1.50703 * 120.10942 * 179.97438 * 11 10 8 13 13 C 1.34238 * 125.03162 * 179.97438 * 2 1 3 14 14 C 1.50690 * 126.49885 * 0.06359 * 13 2 1 15 15 C 1.50702 * 109.47312 * 269.97206 * 14 13 2 16 16 H 1.07999 * 120.00050 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00347 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99743 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00291 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47127 * 119.99626 * 19 17 15 22 22 H 1.48500 * 109.46960 * 239.99706 * 19 17 15 23 23 H 1.09001 * 109.47713 * 270.04699 * 1 2 3 24 24 H 1.09004 * 109.47144 * 30.04476 * 1 2 3 25 25 H 1.09000 * 109.46906 * 150.04518 * 1 2 3 26 26 H 1.08001 * 120.11688 * 179.77236 * 7 6 5 27 27 H 1.08995 * 109.47017 * 270.02926 * 9 8 7 28 28 H 1.09001 * 109.46591 * 30.02076 * 9 8 7 29 29 H 1.08998 * 109.47106 * 150.02307 * 9 8 7 30 30 H 1.07992 * 119.66936 * 179.97438 * 10 8 7 31 31 H 1.09002 * 109.47152 * 90.00084 * 12 11 10 32 32 H 1.09001 * 109.46980 * 330.00184 * 12 11 10 33 33 H 1.09004 * 109.47113 * 210.00165 * 12 11 10 34 34 H 1.09000 * 109.47552 * 29.97488 * 14 13 2 35 35 H 1.09000 * 109.47301 * 149.97172 * 14 13 2 36 36 H 0.97005 * 120.00224 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1205 0.0000 4 1 1.9621 2.0325 -0.0004 5 6 3.6214 0.7606 0.0063 6 6 3.6704 -0.6456 0.0016 7 6 4.9038 -1.2996 0.0025 8 6 6.0589 -0.5692 0.0028 9 6 7.3900 -1.2758 0.0044 10 6 6.0159 0.8180 0.0026 11 6 4.8094 1.4837 0.0017 12 6 4.7774 2.9904 0.0021 13 6 2.2775 -1.0992 0.0005 14 6 1.8001 -2.5285 -0.0002 15 6 1.6403 -3.0055 1.4204 16 1 1.8627 -2.3403 2.2416 17 6 1.2113 -4.2914 1.6717 18 7 0.9410 -5.1017 0.6717 19 14 1.0139 -4.8829 3.4326 20 1 1.3799 -3.7879 4.3665 21 1 -0.3974 -5.2818 3.6655 22 1 1.9029 -6.0494 3.6655 23 1 -0.3634 0.0008 1.0276 24 1 -0.3634 0.8896 -0.5145 25 1 -0.3633 -0.8904 -0.5131 26 1 4.9449 -2.3788 0.0026 27 1 7.7098 -1.4457 1.0324 28 1 7.2940 -2.2325 -0.5090 29 1 8.1286 -0.6603 -0.5090 30 1 6.9372 1.3813 0.0033 31 1 4.7706 3.3540 -1.0254 32 1 5.6590 3.3724 0.5169 33 1 3.8794 3.3346 0.5153 34 1 0.8411 -2.5911 -0.5145 35 1 2.5294 -3.1549 -0.5139 36 1 0.6388 -6.0063 0.8485 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082372470.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:29 Heat of formation + Delta-G solvation = 26.666905 kcal Electronic energy + Delta-G solvation = -17001.716436 eV Core-core repulsion = 14449.930321 eV Total energy + Delta-G solvation = -2551.786115 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74586 -37.13818 -33.81406 -32.77872 -31.06753 -30.84953 -28.25561 -26.83370 -26.07265 -25.01833 -22.80803 -20.51955 -20.24640 -17.96435 -17.05861 -16.17434 -15.26672 -14.65490 -14.41919 -14.35107 -13.54995 -13.29795 -13.08791 -12.96978 -12.51286 -12.30503 -12.23085 -12.05317 -11.89078 -11.67095 -11.43023 -11.22111 -10.86900 -10.70368 -10.47727 -10.39186 -10.10229 -9.60520 -9.36377 -8.56954 -8.32828 -7.41177 -6.74053 -5.92975 -3.96539 1.68228 2.15161 3.33761 3.39933 3.43450 3.50764 3.69806 4.40711 4.54661 5.08731 5.22624 5.31117 5.40133 5.51150 5.55831 5.67391 5.69312 5.73436 5.90206 5.95576 5.98279 6.08329 6.14016 6.24806 6.31245 6.49090 6.55225 6.66014 6.85882 6.98664 7.22562 7.44188 7.53411 7.64606 7.79518 8.00483 8.02689 8.21567 8.48710 9.09036 9.66520 11.15083 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.007337 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.805745 B = 3815.294688 C = 4628.456879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 N -0.599 5.599 4 H 0.403 0.597 5 C 0.094 3.906 6 C -0.093 4.093 7 C -0.057 4.057 8 C -0.131 4.131 9 C -0.102 4.102 10 C -0.106 4.106 11 C -0.110 4.110 12 C -0.103 4.103 13 C -0.107 4.107 14 C 0.082 3.918 15 C -0.501 4.501 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.122 0.878 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.025 0.975 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.207 12.894 -2.324 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 N -0.204 5.204 4 H 0.238 0.762 5 C -0.013 4.013 6 C -0.099 4.099 7 C -0.075 4.075 8 C -0.133 4.133 9 C -0.159 4.159 10 C -0.125 4.125 11 C -0.113 4.113 12 C -0.160 4.160 13 C -0.113 4.113 14 C 0.045 3.955 15 C -0.539 4.539 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.140 0.860 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.132 0.868 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.046 12.805 -2.362 14.356 hybrid contribution -0.283 0.050 1.065 1.103 sum 5.763 12.854 -1.297 14.146 Atomic orbital electron populations 1.20289 0.88267 1.02393 1.02601 1.20016 0.93127 0.85163 1.08322 1.41531 1.03803 1.07554 1.67480 0.76179 1.17994 0.84220 0.94121 1.04996 1.19251 0.93973 0.91381 1.05256 1.20234 0.90034 0.99719 0.97511 1.19225 0.94931 0.93368 1.05748 1.20640 0.93840 0.99853 1.01562 1.20370 0.95657 0.93503 1.02978 1.18668 0.90464 0.94500 1.07655 1.20601 1.01873 0.92115 1.01418 1.20991 0.89289 0.96841 1.04214 1.17707 0.96083 0.84649 0.97092 1.21154 1.43741 0.97074 0.91947 0.92728 1.24988 0.95757 0.96802 0.96846 1.69966 1.46416 1.06910 1.30395 0.86570 0.77615 0.78740 0.85333 1.19814 1.21074 1.21036 0.91123 0.93076 0.89520 0.85961 0.92050 0.91951 0.92476 0.86755 0.92011 0.91780 0.92847 0.95523 0.95684 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.18 36.00 0.37 -0.92 16 2 C 0.04 0.74 7.08 -81.77 -0.58 0.16 16 3 N -0.60 -10.20 6.07 -6.95 -0.04 -10.24 16 4 H 0.40 5.34 8.87 -40.82 -0.36 4.97 16 5 C 0.09 1.76 6.95 -83.99 -0.58 1.18 16 6 C -0.09 -2.01 6.35 -105.14 -0.67 -2.68 16 7 C -0.06 -1.13 9.67 -39.64 -0.38 -1.51 16 8 C -0.13 -2.20 5.85 -104.99 -0.61 -2.81 16 9 C -0.10 -1.35 9.99 36.01 0.36 -1.00 16 10 C -0.11 -1.64 9.32 -39.54 -0.37 -2.01 16 11 C -0.11 -1.75 5.89 -104.47 -0.62 -2.37 16 12 C -0.10 -1.22 10.02 36.01 0.36 -0.86 16 13 C -0.11 -2.47 5.50 -102.72 -0.57 -3.03 16 14 C 0.08 2.17 5.26 -29.04 -0.15 2.01 16 15 C -0.50 -14.25 9.09 -34.44 -0.31 -14.57 16 16 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 19 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 1.52 7.04 -51.93 -0.37 1.16 16 26 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.80 8.08 -51.93 -0.42 0.39 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 33 H 0.05 0.59 7.99 -51.93 -0.41 0.17 16 34 H 0.03 0.72 7.05 -51.93 -0.37 0.35 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -31.54 304.89 -8.85 -40.40 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.27 Total: 1.25 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -3.85 Total: -26.89 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.69 Total: -36.19 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.54 -8.85 -40.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082372470.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.063 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds