Wall clock time and date at job start Mon Mar 30 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.36835 * 125.02885 * 2 1 4 4 H 0.96996 * 125.06532 * 359.97438 * 3 2 1 5 5 C 1.37696 * 109.87582 * 179.72147 * 3 2 1 6 6 C 1.40708 * 107.14609 * 0.37739 * 5 3 2 7 7 C 1.39596 * 119.92633 * 179.82287 * 6 5 3 8 8 C 1.36661 * 119.76460 * 359.74518 * 7 6 5 9 9 C 1.50701 * 119.73733 * 179.97438 * 8 7 6 10 10 C 1.38787 * 120.52852 * 0.02562 * 8 7 6 11 11 C 1.37793 * 120.66535 * 359.97438 * 10 8 7 12 12 C 1.50703 * 120.10942 * 179.97438 * 11 10 8 13 13 C 1.34238 * 125.03162 * 179.97438 * 2 1 3 14 14 C 1.50690 * 126.49885 * 0.06359 * 13 2 1 15 15 C 1.50702 * 109.47312 * 269.97206 * 14 13 2 16 16 H 1.07999 * 120.00050 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00347 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99743 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00291 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47127 * 119.99626 * 19 17 15 22 22 H 1.48500 * 109.46960 * 239.99706 * 19 17 15 23 23 H 1.09001 * 109.47713 * 270.04699 * 1 2 3 24 24 H 1.09004 * 109.47144 * 30.04476 * 1 2 3 25 25 H 1.09000 * 109.46906 * 150.04518 * 1 2 3 26 26 H 1.08001 * 120.11688 * 179.77236 * 7 6 5 27 27 H 1.08995 * 109.47017 * 270.02926 * 9 8 7 28 28 H 1.09001 * 109.46591 * 30.02076 * 9 8 7 29 29 H 1.08998 * 109.47106 * 150.02307 * 9 8 7 30 30 H 1.07992 * 119.66936 * 179.97438 * 10 8 7 31 31 H 1.09002 * 109.47152 * 90.00084 * 12 11 10 32 32 H 1.09001 * 109.46980 * 330.00184 * 12 11 10 33 33 H 1.09004 * 109.47113 * 210.00165 * 12 11 10 34 34 H 1.09000 * 109.47552 * 29.97488 * 14 13 2 35 35 H 1.09000 * 109.47301 * 149.97172 * 14 13 2 36 36 H 0.97005 * 120.00224 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1205 0.0000 4 1 1.9621 2.0325 -0.0004 5 6 3.6214 0.7606 0.0063 6 6 3.6704 -0.6456 0.0016 7 6 4.9038 -1.2996 0.0025 8 6 6.0589 -0.5692 0.0028 9 6 7.3900 -1.2758 0.0044 10 6 6.0159 0.8180 0.0026 11 6 4.8094 1.4837 0.0017 12 6 4.7774 2.9904 0.0021 13 6 2.2775 -1.0992 0.0005 14 6 1.8001 -2.5285 -0.0002 15 6 1.6403 -3.0055 1.4204 16 1 1.8627 -2.3403 2.2416 17 6 1.2113 -4.2914 1.6717 18 7 0.9410 -5.1017 0.6717 19 14 1.0139 -4.8829 3.4326 20 1 1.3799 -3.7879 4.3665 21 1 -0.3974 -5.2818 3.6655 22 1 1.9029 -6.0494 3.6655 23 1 -0.3634 0.0008 1.0276 24 1 -0.3634 0.8896 -0.5145 25 1 -0.3633 -0.8904 -0.5131 26 1 4.9449 -2.3788 0.0026 27 1 7.7098 -1.4457 1.0324 28 1 7.2940 -2.2325 -0.5090 29 1 8.1286 -0.6603 -0.5090 30 1 6.9372 1.3813 0.0033 31 1 4.7706 3.3540 -1.0254 32 1 5.6590 3.3724 0.5169 33 1 3.8794 3.3346 0.5153 34 1 0.8411 -2.5911 -0.5145 35 1 2.5294 -3.1549 -0.5139 36 1 0.6388 -6.0063 0.8485 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082372470.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:29 Heat of formation + Delta-G solvation = 8.994474 kcal Electronic energy + Delta-G solvation = -17002.482770 eV Core-core repulsion = 14449.930321 eV Total energy + Delta-G solvation = -2552.552449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18504 -38.48876 -35.62854 -34.39340 -32.61107 -32.32992 -29.88431 -28.02803 -27.69054 -26.34273 -24.85377 -21.90543 -21.52870 -19.61498 -18.47481 -18.39635 -16.65353 -16.47769 -15.98621 -15.75741 -14.83144 -14.53965 -14.43100 -14.24578 -14.04593 -13.91547 -13.72532 -13.34387 -13.26010 -13.06995 -12.96467 -12.70590 -12.57309 -12.49793 -12.01826 -11.87311 -11.66779 -11.54543 -11.36357 -10.56303 -10.07783 -8.80379 -8.37479 -8.02818 -6.27199 0.28606 0.77553 1.37303 1.38363 1.51498 1.89550 2.32417 2.43457 3.01302 3.13975 3.86912 3.97655 4.07746 4.25331 4.45594 4.47948 4.53209 4.58282 4.75397 4.78522 4.83646 4.85442 4.92031 5.01157 5.09575 5.14101 5.22091 5.31004 5.38135 5.41333 5.55204 5.74815 5.79069 5.88778 6.00708 6.12956 6.30364 6.41393 6.83757 6.91314 7.40464 8.93879 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.007337 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.805745 B = 3815.294688 C = 4628.456879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.059 3.941 3 N -0.581 5.581 4 H 0.425 0.575 5 C 0.081 3.919 6 C -0.129 4.129 7 C -0.102 4.102 8 C -0.120 4.120 9 C -0.102 4.102 10 C -0.109 4.109 11 C -0.100 4.100 12 C -0.101 4.101 13 C -0.171 4.171 14 C 0.099 3.901 15 C -0.515 4.515 16 H 0.044 0.956 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.278 1.278 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.007 0.993 35 H -0.014 1.014 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 16.005 -1.368 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.048 4.048 3 N -0.187 5.187 4 H 0.264 0.736 5 C -0.027 4.027 6 C -0.134 4.134 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.158 4.158 10 C -0.127 4.127 11 C -0.103 4.103 12 C -0.158 4.158 13 C -0.177 4.177 14 C 0.062 3.938 15 C -0.553 4.553 16 H 0.062 0.938 17 C -0.192 4.192 18 N -0.572 5.572 19 Si 0.785 3.215 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.203 1.203 23 H 0.093 0.907 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.174 0.826 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.025 0.975 35 H 0.004 0.996 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.127 15.956 -1.410 17.532 hybrid contribution -0.543 -0.861 0.710 1.241 sum 6.585 15.095 -0.700 16.483 Atomic orbital electron populations 1.20356 0.86190 1.03634 1.03232 1.20268 0.94355 0.85079 1.05072 1.41371 1.03059 1.07905 1.66372 0.73586 1.18253 0.85612 0.93031 1.05781 1.19500 0.93641 0.93515 1.06737 1.20247 0.91467 0.98810 1.01590 1.19653 0.95063 0.94470 1.02982 1.20718 0.92629 0.99918 1.02578 1.20871 0.97269 0.92901 1.01701 1.19244 0.89280 0.97011 1.04769 1.20699 1.03553 0.88489 1.03029 1.20747 0.91445 0.95900 1.09645 1.17296 0.93889 0.87071 0.95539 1.21370 1.43887 0.97460 0.92609 0.93772 1.25865 0.95168 0.96790 1.01426 1.70088 1.47003 1.07364 1.32755 0.85474 0.78152 0.78156 0.79736 1.19420 1.19687 1.20345 0.90652 0.88696 0.91386 0.88806 0.91028 0.92507 0.89379 0.82608 0.90246 0.89424 0.91944 0.97475 0.99614 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.49 10.18 71.23 0.72 -1.76 16 2 C 0.06 2.33 7.08 40.86 0.29 2.62 16 3 N -0.58 -18.92 6.07 -175.91 -1.07 -19.99 16 4 H 0.42 9.92 8.87 -92.71 -0.82 9.10 16 5 C 0.08 2.94 6.95 39.03 0.27 3.21 16 6 C -0.13 -5.84 6.35 -20.20 -0.13 -5.97 16 7 C -0.10 -4.36 9.67 22.23 0.22 -4.15 16 8 C -0.12 -3.96 5.85 -20.10 -0.12 -4.08 16 9 C -0.10 -2.55 9.99 71.24 0.71 -1.84 16 10 C -0.11 -3.02 9.32 22.30 0.21 -2.81 16 11 C -0.10 -2.90 5.89 -19.77 -0.12 -3.01 16 12 C -0.10 -1.89 10.02 71.24 0.71 -1.18 16 13 C -0.17 -8.36 5.50 -18.63 -0.10 -8.47 16 14 C 0.10 5.72 5.26 29.10 0.15 5.87 16 15 C -0.52 -31.03 9.09 25.60 0.23 -30.80 16 16 H 0.04 2.68 7.74 -2.91 -0.02 2.66 16 17 C 0.00 0.30 5.46 84.65 0.46 0.76 16 18 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 19 Si 0.96 45.97 29.54 68.60 2.03 47.99 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 25 H 0.07 2.47 7.04 -2.39 -0.02 2.45 16 26 H 0.09 4.32 8.06 -2.91 -0.02 4.30 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 29 H 0.09 1.66 8.08 -2.39 -0.02 1.65 16 30 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.28 8.09 -2.39 -0.02 1.27 16 33 H 0.06 1.08 7.99 -2.38 -0.02 1.06 16 34 H 0.01 0.42 7.05 -2.39 -0.02 0.40 16 35 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -73.58 304.89 5.01 -68.57 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.25 Total: 12.58 kcal Atomic # 6 Polarization: -55.13 SS G_CDS: 3.52 Total: -51.62 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -0.78 Total: -77.53 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -73.58 5.01 -68.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082372470.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.568 kcal (2) G-P(sol) polarization free energy of solvation -73.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds