Wall clock time and date at job start Mon Mar 30 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36835 * 125.03025 * 2 1 4 4 H 0.96995 * 125.06505 * 0.02999 * 3 2 1 5 5 C 1.37693 * 109.86897 * 180.29869 * 3 2 1 6 6 C 1.39129 * 133.50542 * 179.71106 * 5 3 2 7 7 C 1.37746 * 119.77633 * 180.02562 * 6 5 3 8 8 C 1.38837 * 120.66648 * 0.02562 * 7 6 5 9 9 C 1.36620 * 120.52992 * 359.97438 * 8 7 6 10 10 C 1.39628 * 119.76105 * 0.02562 * 9 8 7 11 11 C 1.34239 * 125.03676 * 179.82811 * 2 1 3 12 12 C 1.50699 * 126.50192 * 359.97438 * 11 2 1 13 13 C 1.53006 * 109.46866 * 269.68691 * 12 11 2 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46957 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00296 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47118 * 89.99310 * 19 17 15 21 21 H 1.48494 * 109.47201 * 209.99478 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99452 * 19 17 15 23 23 H 1.08997 * 109.47066 * 270.16577 * 1 2 3 24 24 H 1.08996 * 109.47442 * 30.17131 * 1 2 3 25 25 H 1.09001 * 109.46602 * 150.17208 * 1 2 3 26 26 H 1.07998 * 120.10998 * 0.02562 * 6 5 3 27 27 H 1.08003 * 119.66729 * 179.97438 * 7 6 5 28 28 H 1.08000 * 119.73538 * 180.02562 * 8 7 6 29 29 H 1.07998 * 120.11970 * 179.97438 * 9 8 7 30 30 H 1.09000 * 109.47247 * 149.68860 * 12 11 2 31 31 H 1.09001 * 109.47358 * 29.68286 * 12 11 2 32 32 H 1.08993 * 109.46955 * 300.00219 * 13 12 11 33 33 H 1.09000 * 109.47050 * 60.00048 * 13 12 11 34 34 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 35 35 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 36 36 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1205 0.0000 4 1 1.9622 2.0325 0.0004 5 6 3.6215 0.7604 -0.0068 6 6 4.8098 1.4839 -0.0147 7 6 6.0158 0.8184 -0.0208 8 6 6.0589 -0.5693 -0.0195 9 6 4.9042 -1.2995 -0.0117 10 6 3.6706 -0.6454 -0.0055 11 6 2.2777 -1.0991 0.0033 12 6 1.8005 -2.5285 0.0081 13 6 1.6470 -3.0101 1.4523 14 6 1.1619 -4.4611 1.4572 15 6 1.0101 -4.9352 2.8796 16 1 1.2365 -4.2682 3.6982 17 6 0.5821 -6.2206 3.1360 18 7 0.3059 -7.0327 2.1391 19 14 0.3933 -6.8080 4.8991 20 1 -0.9847 -6.5203 5.3718 21 1 0.6433 -8.2704 4.9631 22 1 1.3712 -6.1004 5.7640 23 1 -0.3633 0.0030 1.0276 24 1 -0.3634 0.8884 -0.5165 25 1 -0.3632 -0.8916 -0.5112 26 1 4.7867 2.5636 -0.0162 27 1 6.9372 1.3818 -0.0274 28 1 7.0128 -1.0757 -0.0239 29 1 4.9454 -2.3787 -0.0111 30 1 2.5267 -3.1558 -0.5088 31 1 0.8384 -2.5922 -0.5002 32 1 2.6090 -2.9464 1.9607 33 1 0.9207 -2.3828 1.9692 34 1 0.1998 -4.5244 0.9489 35 1 1.8879 -5.0886 0.9402 36 1 0.0045 -7.9369 2.3193 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082533670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:15 Heat of formation + Delta-G solvation = 25.940048 kcal Electronic energy + Delta-G solvation = -16522.691349 eV Core-core repulsion = 13970.873715 eV Total energy + Delta-G solvation = -2551.817634 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16443 -36.98919 -34.78464 -32.74301 -31.09541 -30.85663 -29.26806 -27.33406 -25.93526 -23.30200 -22.06727 -21.20428 -20.15010 -18.72897 -17.44364 -16.26175 -16.08706 -14.99099 -14.69794 -14.40179 -14.25459 -13.75956 -13.45697 -12.89473 -12.85116 -12.49467 -12.26560 -12.04879 -11.71774 -11.50422 -11.31046 -11.04817 -10.80364 -10.62119 -10.55210 -10.37186 -9.53676 -9.45959 -9.14356 -8.94242 -8.27536 -7.98907 -7.31656 -5.92952 -3.94532 1.27952 1.78103 2.87230 3.21812 3.36004 3.42079 3.46255 4.08442 4.52070 4.83388 4.90570 5.12536 5.22091 5.34813 5.42600 5.47168 5.54926 5.63055 5.67794 5.93544 6.01860 6.08137 6.10263 6.29701 6.32976 6.49742 6.61190 6.77758 6.86379 6.96203 7.08070 7.11115 7.27833 7.36536 7.69440 7.77561 7.94213 8.08939 8.52670 9.13005 9.69041 11.18355 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027944 B = 0.004910 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.778253 B = 5701.117245 C = 6237.307464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.064 3.936 3 N -0.597 5.597 4 H 0.409 0.591 5 C 0.095 3.905 6 C -0.137 4.137 7 C -0.104 4.104 8 C -0.155 4.155 9 C -0.063 4.063 10 C -0.099 4.099 11 C -0.145 4.145 12 C -0.048 4.048 13 C -0.100 4.100 14 C 0.020 3.980 15 C -0.517 4.517 16 H 0.053 0.947 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 17.198 -6.390 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 N -0.201 5.201 4 H 0.245 0.755 5 C -0.012 4.012 6 C -0.158 4.158 7 C -0.123 4.123 8 C -0.174 4.174 9 C -0.081 4.081 10 C -0.104 4.104 11 C -0.152 4.152 12 C -0.086 4.086 13 C -0.138 4.138 14 C -0.017 4.017 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.668 17.115 -6.424 19.140 hybrid contribution -0.220 0.123 1.025 1.055 sum 5.448 17.238 -5.399 18.867 Atomic orbital electron populations 1.20446 0.87811 1.03278 1.03255 1.20079 0.93264 0.85319 1.05499 1.41611 1.03938 1.07862 1.66679 0.75453 1.18210 0.84538 0.94257 1.04201 1.19928 0.89848 0.98532 1.07506 1.20724 0.96412 0.94459 1.00707 1.20585 0.97925 0.93872 1.05021 1.20382 0.90510 0.99955 0.97277 1.19168 0.93506 0.91775 1.05922 1.20384 0.90165 0.95304 1.09338 1.20122 1.00121 0.89038 0.99311 1.21582 1.00169 0.99195 0.92874 1.19126 0.96227 0.89594 0.96754 1.21293 1.44140 0.97374 0.92735 0.92832 1.25014 0.95673 0.96919 0.96851 1.69965 1.46237 1.06855 1.30607 0.86636 0.78382 0.77849 0.85399 1.20742 1.21262 1.19923 0.90436 0.92018 0.89402 0.86793 0.86216 0.86296 0.85832 0.91807 0.91803 0.93534 0.93690 0.96696 0.96651 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 10.18 36.01 0.37 -0.66 16 2 C 0.06 0.92 7.08 -81.77 -0.58 0.34 16 3 N -0.60 -7.56 6.07 -6.95 -0.04 -7.60 16 4 H 0.41 3.75 8.96 -40.82 -0.37 3.38 16 5 C 0.10 1.37 7.28 -83.99 -0.61 0.76 16 6 C -0.14 -1.69 10.08 -39.43 -0.40 -2.09 16 7 C -0.10 -1.23 10.01 -39.54 -0.40 -1.62 16 8 C -0.15 -2.00 9.97 -39.94 -0.40 -2.40 16 9 C -0.06 -0.96 10.05 -39.65 -0.40 -1.36 16 10 C -0.10 -1.63 6.35 -105.14 -0.67 -2.29 16 11 C -0.15 -2.44 5.57 -102.71 -0.57 -3.01 16 12 C -0.05 -0.87 5.50 -27.88 -0.15 -1.03 16 13 C -0.10 -2.17 5.14 -26.73 -0.14 -2.31 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 1.02 7.03 -51.93 -0.37 0.66 16 26 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 27 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.09 7.05 -51.93 -0.37 0.73 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 305.28 15.07 4.60 4.60 Total: -1.00 -32.50 305.28 -9.51 -42.01 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.29 Total: -0.35 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -4.49 Total: -29.06 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.69 Total: -34.22 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.50 -9.51 -42.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082533670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.948 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds